Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30517
         (828 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   3.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   5.2  
AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine 3-mon...    22   5.2  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    22   5.2  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    22   5.2  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   9.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   9.0  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +3

Query: 246 AVSRRRLQDRRSTNRACQAAAPSTARQQADRRRPALQGYRRRLRP 380
           ++ R+  Q R   N++     P T R+   RR P  +    R  P
Sbjct: 198 SLPRQYSQSRGRHNQSRSKRQPKTGREDQTRRNPYYRPRTSRTEP 242


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 553  GLPVVPPEPPLCASCTPSTSHVP-VSP 630
            G+P  PP+   C + T  T  V  VSP
Sbjct: 1098 GVPEQPPDKATCTTLTAQTIRVSWVSP 1124


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 556 LPVVPPEPPLCASCTPSTSHVP 621
           LP VPP  P C    P  +  P
Sbjct: 693 LPPVPPNFPTCGDHVPEINSNP 714


>AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 122 VIPHPRVPQLPPRHIHL 172
           VIP    P++ P H+H+
Sbjct: 198 VIPPENGPKMTPNHLHI 214


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 122 VIPHPRVPQLPPRHIHL 172
           VIP    P++ P H+H+
Sbjct: 198 VIPPENGPKMTPNHLHI 214


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 122 VIPHPRVPQLPPRHIHL 172
           VIP    P++ P H+H+
Sbjct: 198 VIPPENGPKMTPNHLHI 214


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 125 IPHPRVPQLPP 157
           +P P VP++PP
Sbjct: 206 VPKPTVPKIPP 216


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 125 IPHPRVPQLPP 157
           +P P VP++PP
Sbjct: 206 VPKPTVPKIPP 216


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,019
Number of Sequences: 336
Number of extensions: 5187
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)