Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30516
(781 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 42 1e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 39 0.001
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 35 0.011
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 35 0.015
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.035
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 33 0.046
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 33 0.061
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 33 0.061
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 32 0.11
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.24
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 31 0.24
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 30 0.32
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 30 0.32
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 30 0.43
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 29 0.57
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.57
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 29 0.57
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 29 0.57
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 29 0.75
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 29 0.75
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.99
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 29 0.99
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 28 1.7
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 2.3
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 2.3
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 27 3.0
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.0
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 4.0
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 5.3
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 26 5.3
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 5.3
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 26 7.0
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 25 9.2
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 41.9 bits (94), Expect = 1e-04
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
++F+G + + T D+ F+ YG +++C ++ +GFV +E+ + A
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDA 50
Score = 35.9 bits (79), Expect = 0.007
Identities = 10/42 (23%), Positives = 27/42 (64%)
Frame = +1
Query: 361 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 486
T++FVG + + ++ + F+ +G +++C ++ +GFV ++
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVE 45
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 38.7 bits (86), Expect = 0.001
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
K+FIG L+ +TT+ LR FE++G V++C ++R+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRD 197
Score = 34.3 bits (75), Expect = 0.020
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
K+F+G L +T +R+ F++FG V++C ++R+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRD 197
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +1
Query: 253 TTSRPRTIQNLNGELVH--GQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ 426
T P+ + + + H G+ I + A R+ T K+FVG + E R F
Sbjct: 210 TFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQEK-TAKMFVGGVPGDCTEEEFRNFFN 268
Query: 427 KFGTVVECDIV 459
+FG V++ ++
Sbjct: 269 QFGRVLDATLM 279
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.1 bits (77), Expect = 0.011
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Frame = +1
Query: 289 GELVHGQAIKIEAAKSRKAPST---------PTTKIFVGNLTDKTRAPEVRELFQKFGTV 441
G + HG+ +K+ A+ P + + +F+GNL E+ E F KFG +
Sbjct: 266 GFIFHGRPLKLTFARPSPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
Query: 442 VECDIV--RNYGFVH 480
I+ +N FVH
Sbjct: 326 EHIKILSKKNIAFVH 340
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENNKSA 266
+FIGNL E ++ F K+G + I+ +N FVH N + A
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDA 347
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 34.7 bits (76), Expect = 0.015
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 253 TTSRPRTIQNLNGELVHGQAIKIEAAKSRK-APSTPTTKIFVGNLTDKTRAPEVRELFQK 429
T + P T+Q+ E A+ A +S A ++FVG L+ T+ E+R LF+
Sbjct: 8 TQNAPNTVQD-QVEASVDAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFET 66
Query: 430 FGTV 441
GTV
Sbjct: 67 VGTV 70
Score = 34.3 bits (75), Expect = 0.020
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 126 FKIFIGNLSDKTTEADLRPLFEKYGTV 206
F++F+G LS T ++++R LFE GTV
Sbjct: 44 FRVFVGRLSTSTKKSEIRSLFETVGTV 70
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.5 bits (73), Expect = 0.035
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENNKSA 266
+F+G LS +E +L+ LF+ +G +V I + GFV N +SA
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSA 351
Score = 29.1 bits (62), Expect = 0.75
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGRCERPFKEFE 525
T + +FVG L+ E++ LFQ FG +V I + GFV E + +
Sbjct: 300 TANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQ 359
Query: 526 RY 531
Y
Sbjct: 360 GY 361
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 33.1 bits (72), Expect = 0.046
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +3
Query: 129 KIFIGNLSDKT-TEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSAA 269
++F+G+L+ K+ ++ +L +F+ YG + + + NYGFV N+ A
Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCA 411
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 361 TKIFVGNLTDKTRAPE-VRELFQKFGTVVECDIVRNYGFVHLDATGRCER 507
+++F+G+L K+ + + ++F+ +G + + + NYGFV C R
Sbjct: 363 SRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCAR 412
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 32.7 bits (71), Expect = 0.061
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 367 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--GFVHL 483
+F+G +T R P +R +F++FG+V + NY GF+ +
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKM 448
Score = 30.3 bits (65), Expect = 0.32
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--GFVHMENNKSA 266
+F+G ++ E LR +FE++G+V + NY GF+ M +A
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAA 454
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 32.7 bits (71), Expect = 0.061
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Frame = +1
Query: 268 RTIQNLNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVV 444
+ + LN L+ G+ +I + + T +F+ NL + + F FG ++
Sbjct: 136 KALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKIL 195
Query: 445 ECDIV-------RNYGFVHLDA 489
C + + YGFVH D+
Sbjct: 196 SCKVAVDELGNAKGYGFVHFDS 217
Score = 30.3 bits (65), Expect = 0.32
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Frame = +3
Query: 123 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENNKSA 266
T +FI NL L F +G ++ C + + YGFVH ++ +SA
Sbjct: 167 TGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESA 221
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Frame = +1
Query: 274 IQNLNGELVHGQAIKIEAAKSRKAPSTPT-------TKIFVGNLTDKTRAPEVRELFQKF 432
I+++NG L++ + + + SR+ + T +++ NL + E +LF +F
Sbjct: 225 IEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQF 284
Query: 433 GTVVECDIVRN 465
G + +V++
Sbjct: 285 GEITSLSLVKD 295
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV 224
+FI NL D+ + L+ F +GT+ I+
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIM 396
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 367 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVH 480
+F+GNL + E+RE + FG + + IV RN FVH
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVH 247
Score = 30.7 bits (66), Expect = 0.24
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 111 AGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR--NYGFVHMENNKSAAN 272
AG + I+IGN D T L+ FE++G + + R N FV+ + SA N
Sbjct: 409 AGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAIN 464
Score = 25.4 bits (53), Expect = 9.2
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Frame = +1
Query: 274 IQNLNGELVHGQAIKIEAAK-SRKAPST--------PTTKIFVGNLTDKTRAPEVRELFQ 426
+ N++G ++ + +KI K S PS + I++GN D ++E F+
Sbjct: 376 MSNIHGLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFE 435
Query: 427 KFGTVVECDIVR--NYGFVH 480
+FG + + R N FV+
Sbjct: 436 EFGEIEYVNFFREKNCAFVN 455
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 307 QAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
Q I + ++ P PT ++FV N++ + ++R F+ FG V + D+ N
Sbjct: 77 QTINYDYNENSLGPEPPT-QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
++F+ N+S T LR F+ +G V + D+ N
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 30.7 bits (66), Expect = 0.24
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 126 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
F++F+GNL + + L F +Y ++V+ +VR+
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD 64
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 30.3 bits (65), Expect = 0.32
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 355 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
P +FV L T+ ++ +F +FG ++ C ++R+
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRD 278
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 30.3 bits (65), Expect = 0.32
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 373 VGNLTDKTRAPEVRELFQKFGTV 441
V NL+D TR E+R+LF++FG +
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGI 228
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.43
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 367 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 462
+FV + + + E++++F KFGTV I+R
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMR 134
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 29.5 bits (63), Expect = 0.57
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 126 FKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIV 224
+ IF+G L T L LF KYG V++C I+
Sbjct: 365 YSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKII 398
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.5 bits (63), Expect = 0.57
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Frame = +3
Query: 117 HRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSA 266
+ T +F+G LS + L FE+YGT+V ++ + YG+V E ++A
Sbjct: 260 NETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAA 317
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.5 bits (63), Expect = 0.57
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
+++VGNL+ + R E++E + G V+ C+I+
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL 98
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 224
++++GNLS + +L+ + G V+ C+I+
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL 98
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.57
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 13/56 (23%)
Frame = +1
Query: 349 STPTT---KIFVGNLTDKT--RAPEVRELFQKFGTVVEC--------DIVRNYGFV 477
STPT +FV NL D ++ ELF KFG + C +I + YGFV
Sbjct: 412 STPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFV 467
Score = 28.7 bits (61), Expect = 0.99
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 310 AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFG 435
A++ + K++++ I+VGNL ++ ++ ELF+ FG
Sbjct: 3 ALEKLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFG 44
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYG 200
I++GNL +DL LFE +G
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFG 44
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 29.1 bits (62), Expect = 0.75
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRP----LFEKYGTVVE 212
+++ NL+DK + DLR LF YGTVV+
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTVVD 36
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.1 bits (62), Expect = 0.75
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 602 SGPLGGPRASA*-PLVSPQGGPMGSQGIPRKGVLGAPEP 715
SG +G P A+A PLV QGG G +G G+LGA P
Sbjct: 1494 SGFVGSPDAAAFSPLV--QGGSEGREGFGDYGLLGAASP 1530
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.7 bits (61), Expect = 0.99
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTV 206
+F+GNL +TT+ADL+ F + G +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQI 254
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +1
Query: 322 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGRC 501
+ A + + P++ +FVGNL +T +++E F + G +R + + TG+C
Sbjct: 215 KTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQ------IRRVRLMTFEDTGKC 268
Query: 502 E 504
+
Sbjct: 269 K 269
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 28.7 bits (61), Expect = 0.99
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
+F+ LS T E+D+ F +YG + +VRN
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRN 134
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 614 PMARTACRNTNSVGQTATFQWGWSVEPSYRSNSLKGRSHR 495
P + A + NS+ T + Q S +P R+NS+ SHR
Sbjct: 812 PRGKHASGSRNSISSTKSPQHKLSDQPRSRNNSISNVSHR 851
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
+F+ L+++ T +L FE+ G V + IVR+
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRD 274
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTV 206
+++GNLS TTE + LF K G +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEI 58
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENNKSAANHSE 281
+FI NLS K T ++ LF +YG V + + R FV EN + A E
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACE 68
>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 511
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +3
Query: 594 ASGPGHWADPEPVLNRLLARRGGPWVPKEFPEKASLGPP 710
A PG DPE L R G P +P+E PP
Sbjct: 130 AEAPGAMEDPEQALQRNSLDDGAPLLPREGNSSDEYLPP 168
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 355 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGRCERPFKE 519
PT ++VGNL A V F +GTV ++ ++ F++ D+ + +E
Sbjct: 585 PTHALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEE 641
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 5.3
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +3
Query: 126 FKIFIGNLSDKTTEADLRPLFEKYGTV 206
+ +FI N+ + +E D++ LF++Y +
Sbjct: 73 YMLFISNIDPEVSENDIKYLFQRYNFI 99
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 271 TIQNLNGELVHGQAIKIEAAKSRKAPSTPTTK 366
T QNL LV GQ IK K + S TTK
Sbjct: 15 TKQNLTDGLVGGQRIKAPNKKKNRKASKNTTK 46
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
+I+VG L+ + ++ F +FG+V +I+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 444 DDRPELLKQLADFGRARLVR*ITHEYFSGWRR 349
D + K+ AD A+L +THE GWRR
Sbjct: 473 DQKARKSKERADL-LAKLDNSLTHEQIEGWRR 503
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Frame = +3
Query: 120 RTFKIFIGNLSDKTTEADLRPLFEKYGTV--------VECDIVRNYGFVHMENNKSA 266
RT ++I L T++ +L ++G V +E ++ + YGF E KSA
Sbjct: 294 RTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSA 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,356,386
Number of Sequences: 5004
Number of extensions: 74873
Number of successful extensions: 299
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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