Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30516
(781 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 47 2e-05
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 43 2e-04
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 42 7e-04
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 40 0.003
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 38 0.012
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 38 0.012
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 36 0.028
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 36 0.037
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.037
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.037
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.037
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 36 0.049
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.064
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 35 0.064
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 35 0.064
SB_12780| Best HMM Match : SAC3_GANP (HMM E-Value=3.7e-07) 35 0.085
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.085
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 35 0.085
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 35 0.085
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.085
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 34 0.11
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 34 0.11
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 33 0.20
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_39925| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 32 0.60
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.60
SB_4787| Best HMM Match : Melibiase (HMM E-Value=2.6e-07) 31 0.79
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 31 1.0
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 31 1.0
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 31 1.4
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 31 1.4
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 31 1.4
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 30 1.8
SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21) 30 1.8
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 30 1.8
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 30 1.8
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 30 1.8
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 30 2.4
SB_30029| Best HMM Match : Extensin_2 (HMM E-Value=0.45) 30 2.4
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 30 2.4
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05) 29 3.2
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_57620| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_42304| Best HMM Match : NHL (HMM E-Value=0) 29 4.2
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_24277| Best HMM Match : EGF (HMM E-Value=2.4e-06) 29 5.6
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_41255| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_19711| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 28 7.4
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 28 9.8
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 28 9.8
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 28 9.8
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 129 KIFIGNLS-DKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
+IFIGNL+ DK DL +F ++G V+ C + N+GFV E K A
Sbjct: 47 RIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHANFGFVQFETEKGA 93
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +1
Query: 334 SRKAPSTPTTKIFVGNL-TDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDA-TGRCER 507
++ P + +IF+GNL TDK ++ E+F + G V+ C + N+GFV + G E
Sbjct: 37 NKNDPHSVRCRIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHANFGFVQFETEKGADEA 96
Query: 508 PFKEFER 528
KE R
Sbjct: 97 VAKEHGR 103
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
++++G L TTE D+R F YG + + ++ NYGFV E+++ A
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNNYGFVEFEDDRDA 49
Score = 33.1 bits (72), Expect = 0.26
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 486
++++G L T +VR F+ +G + + ++ NYGFV +
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNNYGFVEFE 44
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 120 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
R ++F+G LS +T DL +F YG ++ CD+ YGF+ E+ + A
Sbjct: 4 RGTQLFVGRLSKETKLRDLENVFYLYGKLLRCDLKTAYGFIEYEDPRDA 52
Score = 38.3 bits (85), Expect = 0.007
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +1
Query: 361 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 486
T++FVG L+ +T+ ++ +F +G ++ CD+ YGF+ +
Sbjct: 6 TQLFVGRLSKETKLRDLENVFYLYGKLLRCDLKTAYGFIEYE 47
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 41.5 bits (93), Expect = 7e-04
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 6/51 (11%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHMENNKS 263
KIFIG L+ TTE L+ F ++GT+V+C I+ R +GFV E++ S
Sbjct: 51 KIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDGRSRGFGFVTYESSDS 101
Score = 35.1 bits (77), Expect = 0.064
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 334 SRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG 471
S+ + S KIF+G L T +++ F ++GT+V+C I++ G
Sbjct: 41 SKMSESEKLRKIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDG 86
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 123 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG 236
T +F+GN+ TT DL+ FE+YG V++ DI + G
Sbjct: 248 TRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPG 285
Score = 33.9 bits (74), Expect = 0.15
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG 471
T +FVGN+ T +++E F+++G V++ DI + G
Sbjct: 248 TRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPG 285
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 37.5 bits (83), Expect = 0.012
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-YGFVHMENNK 260
K+F+G + E DLRP+FE YG + E I+++ Y H ++ K
Sbjct: 171 KLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHKDDRK 215
Score = 36.3 bits (80), Expect = 0.028
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
K+F+G +S E DLR +F +GT+ E ++RN
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGTIEELTVLRN 248
Score = 32.7 bits (71), Expect = 0.34
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
K+FVG ++ + ++R +F FGT+ E ++RN
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGTIEELTVLRN 248
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 37.5 bits (83), Expect = 0.012
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
+IF+ + +TTE++LR FE+YG V E IVR+
Sbjct: 9 RIFVKGFNRETTESELRAFFEEYGVVKESKIVRD 42
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
+IFV +T E+R F+++G V E IVR+
Sbjct: 9 RIFVKGFNRETTESELRAFFEEYGVVKESKIVRD 42
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 36.3 bits (80), Expect = 0.028
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
I++ N+ +E L+ +F KYG + + +R+YGFV+ +SA
Sbjct: 4 IYVRNVPLPMSETQLKAVFTKYGQIEKVRKIRDYGFVYFAKRESA 48
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 367 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVH 480
I+V N+ +++ +F K+G + + +R+YGFV+
Sbjct: 4 IYVRNVPLPMSETQLKAVFTKYGQIEKVRKIRDYGFVY 41
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 35.9 bits (79), Expect = 0.037
Identities = 11/33 (33%), Positives = 24/33 (72%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
+F+ L+ TT+ DL +F ++GT++ C+++R+
Sbjct: 122 LFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRD 154
Score = 35.1 bits (77), Expect = 0.064
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Frame = +1
Query: 355 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGRCERP 510
P +FV L T ++ +F +FGT++ C+++R+ Y F+ + CER
Sbjct: 118 PDNVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERA 177
Query: 511 F 513
+
Sbjct: 178 Y 178
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 35.9 bits (79), Expect = 0.037
Identities = 22/48 (45%), Positives = 25/48 (52%)
Frame = -2
Query: 747 EKASNRRKTVGGSGAPRTPFRGIPWEPMGPPCGLTSG*ALARGPPNGP 604
E ++ RR GG G PR P RG P G P G G +RGPP GP
Sbjct: 61 ESSAPRRGGYGG-GPPRGPPRGHPMRGRGAPYG--RGGPPSRGPPRGP 105
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 35.9 bits (79), Expect = 0.037
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI--VRNYGFVHLD 486
T ++FVGNL D E++E+F+K+G V E I + +GF+ LD
Sbjct: 50 TGRCRLFVGNLIDCDEE-EMKEMFKKYGEVAEVFINKEKGFGFIRLD 95
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI--VRNYGFVHMENNKSA 266
++F+GNL D E +++ +F+KYG V E I + +GF+ ++ A
Sbjct: 54 RLFVGNLID-CDEEEMKEMFKKYGEVAEVFINKEKGFGFIRLDTRLHA 100
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 35.9 bits (79), Expect = 0.037
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
+++GNL T +DL +FE+YG VV+ I+R+
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRD 44
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 35.5 bits (78), Expect = 0.049
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENNKSAANHSES*RRVSSW 305
I++G+L+ T+ L+ +FE++GT+ D++ R ++ ME + A + R + +
Sbjct: 543 IWVGHLAKIVTQDTLQGIFEEHGTITSIDLIPPRGCAYIQMEKREDAYRALDKLRNIKLY 602
Query: 306 AGDQNRSGQEPEGAVDANH 362
+ +G D +
Sbjct: 603 GNSVKLAWAPAKGVKDREY 621
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 35.1 bits (77), Expect = 0.064
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +1
Query: 298 VHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI---VRNY 468
+ G+ ++ + ++ + P K+FVG L + T + E F +FG V + I R++
Sbjct: 179 IQGRLCEVRLPRPKEELNVPK-KLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHF 237
Query: 469 GFVHLDATGRC 501
GFV + C
Sbjct: 238 GFVTFASVANC 248
Score = 32.3 bits (70), Expect = 0.45
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI---VRNYGFV 242
K+F+G L + TTE L F ++G V + I R++GFV
Sbjct: 200 KLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHFGFV 240
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 35.1 bits (77), Expect = 0.064
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVE 212
++FIGNL +AD+ +F KYGT++E
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTILE 385
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +1
Query: 334 SRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 447
+R AP + ++F+GNL + +V E+F K+GT++E
Sbjct: 350 ARSAPDSH--QVFIGNLPSGVKDADVNEVFSKYGTILE 385
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 35.1 bits (77), Expect = 0.064
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI 221
K+F+G LS +TT+ L+ F KYG +V DI
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDI 60
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 292 ELVHGQ-AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 456
E V+G +++ K+R K+FVG L+ +T ++E F K+G +V DI
Sbjct: 5 EAVNGYIGTSLDSNKTRMTKDDDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDI 60
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 325 AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQK-FGTVVECDIVRNY 468
AA K P KIFVG L +T ++RE F K + V E + + +
Sbjct: 91 AAPIGKPPHLRVKKIFVGGLKPETSDEKIREYFGKAYAPVKEIEYITEH 139
>SB_12780| Best HMM Match : SAC3_GANP (HMM E-Value=3.7e-07)
Length = 436
Score = 34.7 bits (76), Expect = 0.085
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 715 RFGGPKDAFSGNSLGTHGPPLRANKRL-STGSGSAQWPGPLAGIRTRSD 572
RFGGPK SG +L +G + L G + + GP+AG TR +
Sbjct: 176 RFGGPKQQQSGQNLEQNGNQANSEANLHEDGKDHSDYAGPVAGPHTRQN 224
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 34.7 bits (76), Expect = 0.085
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +1
Query: 253 TTSRPRTIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKF 432
+T++ R I N L ++ S+ + K+FVGN+ K RA E+++ F F
Sbjct: 43 STNKAREISNNVAALPIDLVGEVSKDISKYKVVSNKCKVFVGNIGFKVRARELKDFFGYF 102
Query: 433 GTVVECDIV 459
G VV I+
Sbjct: 103 GDVVYAQII 111
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 224
K+F+GN+ K +L+ F +G VV I+
Sbjct: 80 KVFVGNIGFKVRARELKDFFGYFGDVVYAQII 111
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 34.7 bits (76), Expect = 0.085
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Frame = +1
Query: 319 IEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFV 477
I+A +++ PT +++ NL + +F K+G V+ I+R+ GF
Sbjct: 166 IQAQMAKQQEQDPTN-LYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFA 224
Query: 478 HLDATGRCERPFKEFER 528
+++ +CE+ K+F +
Sbjct: 225 RMESAEKCEQVIKDFNK 241
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVV--------ECDIVRNYGFVHMENNKSA 266
++I L TT+ DL L KYGT++ + ++ + YGFV E+ SA
Sbjct: 102 LYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISA 154
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 34.7 bits (76), Expect = 0.085
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +3
Query: 147 LSDKTTEADLRPLFEKYGTVVECDIVRNY 233
LS TTE DLRP+FEKYG V IV ++
Sbjct: 188 LSLYTTERDLRPVFEKYGPVEAIQIVYDH 216
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 34.7 bits (76), Expect = 0.085
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSA 266
+I+I ++ E D++ +FE +G VV C + + YGF+ EN +SA
Sbjct: 200 RIYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSA 253
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN---YGFVHLDATGRCERPFKEFE 525
TTK++VGNL + E+ F+KFG + + + RN + FV + E +E +
Sbjct: 3 TTKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELD 61
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +3
Query: 123 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN---YGFVHMENNKSA 266
T K+++GNL ++L FEK+G + + + RN + FV E+ + A
Sbjct: 3 TTKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDA 53
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +1
Query: 286 NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
NGE + G I+++ A + KA + +F+GNL +RELF G V ++R+
Sbjct: 32 NGEEIDGFHIRVDLASNDKAHDHQRS-VFIGNLPFDIEEEPLRELFTTCGNVESVRLIRD 90
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 123 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 227
T +F+GNL + DLR FEK+G V++ DI R
Sbjct: 236 TRTLFVGNLETGISCQDLRLSFEKFGVVLDVDIKR 270
Score = 32.7 bits (71), Expect = 0.34
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 462
T +FVGNL ++R F+KFG V++ DI R
Sbjct: 236 TRTLFVGNLETGISCQDLRLSFEKFGVVLDVDIKR 270
Score = 29.9 bits (64), Expect = 2.4
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Frame = +1
Query: 298 VHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR--NYG 471
+ GQ I K S TT+++VG L PE+ F +FG + D + ++
Sbjct: 297 MQGQCIGRNHIKIGYGRSQQTTRLWVGGLGPWISIPELEREFDRFGAIRRIDYRKGGDHA 356
Query: 472 FV---HLDATGRCERPFKEFERYD 534
++ LDA R + F+ D
Sbjct: 357 YILYDSLDAASVAAREMRGFQMGD 380
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 33.5 bits (73), Expect = 0.20
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYG----TVVECDIV----RNYGFVHMENNKSAAN 272
K+F+G L+ +TT LR FE YG VV CD R +G+V + K N
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRN 70
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 33.5 bits (73), Expect = 0.20
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG 236
++++GNL E DL +F KYG + + D+ G
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRG 297
Score = 31.1 bits (67), Expect = 1.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG 471
+++VGNL R ++ ++F K+G + + D+ G
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRG 297
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 33.5 bits (73), Expect = 0.20
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTV--VECDIVRNYGFVHMENNKSAAN 272
IF+ L + T L LF YG + +E + + YGFV+M N + A +
Sbjct: 274 IFVYGLPQEATPLFLYKLFSPYGAITNIELKLDKGYGFVNMSNYEEACH 322
>SB_39925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 33.1 bits (72), Expect = 0.26
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 715 RFGGPKDAFSGNSLGTHGPPLRANKRL-STGSGSAQWPGPLAGIRTRSD 572
RFGGPK SG +L +G + L G+ + GP AG TR +
Sbjct: 68 RFGGPKQQQSGQNLEQNGNQANSEANLHEDGNDHTDYAGPEAGPHTRQN 116
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 32.7 bits (71), Expect = 0.34
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
+++ NLS TE L+ + +YG V +++Y FVH A
Sbjct: 331 VYLRNLSPSITEEKLKEEYSQYGAVDRVKKLKDYAFVHFTERDHA 375
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +1
Query: 367 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGRCERPFKEFERYDG 537
+++ NL+ +++E + ++G V +++Y FVH T R + K E DG
Sbjct: 331 VYLRNLSPSITEEKLKEEYSQYGAVDRVKKLKDYAFVHF--TER-DHALKAIEETDG 384
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 32.7 bits (71), Expect = 0.34
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +1
Query: 262 RPRTIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 441
RP+ Q + G + ++ + S P +P KIF+G L + +V+EL FG +
Sbjct: 642 RPKDYQPIPG-MSENASVHVPGVVSTVVPDSPH-KIFIGGLPNYLNEDQVKELLSSFGEL 699
Query: 442 VECDIVRN 465
++V++
Sbjct: 700 RAFNLVKD 707
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
+++ NLS T ADL+ F +YG VV IV N
Sbjct: 351 LWVANLSSITRAADLKTRFSQYGKVVGAKIVTN 383
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 32.3 bits (70), Expect = 0.45
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
+++ N+ + EA+ R FE YG +V C ++R+
Sbjct: 135 LYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRD 167
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 120 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
R+ +++ G L E DL YG V E + YGFV ++ + A
Sbjct: 3 RSTRVYFGRLPRDCRERDLEKFVRGYGRVREISMKLGYGFVEFDDYRDA 51
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 32.3 bits (70), Expect = 0.45
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENNKSAANHSES*RR 293
+++GNL + +L+ +F +YG+++E + + Y F++ K S RR
Sbjct: 617 VYVGNLPPDVKDYELQQMFSQYGSILETKVFADKGYAFINARGEKRRQRCLTSSRR 672
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 331 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
++R P ++VGNL K + +F K VV C ++ +
Sbjct: 359 RARYFPEEENRSLYVGNLDPKCTQELICSIFNKIAKVVRCKMINS 403
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN------YGFVHMENNKSA 266
+++GNL K T+ + +F K VV C ++ + Y FV E + A
Sbjct: 371 LYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGPYCFVEFETHADA 421
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 31.9 bits (69), Expect = 0.60
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Frame = +1
Query: 331 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD--------IVRNYGFVHLD 486
+ +++P+ TK++V +LT V+E+F +G V D + R + +V
Sbjct: 1147 RRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYV 1206
Query: 487 ATGRCERPFKEFE 525
CE+ K +
Sbjct: 1207 DPEECEKALKHMD 1219
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 31.9 bits (69), Expect = 0.60
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTV 206
K+FIG L+ TTE DL+ F YG V
Sbjct: 203 KVFIGGLAFGTTEEDLKEYFSTYGMV 228
>SB_4787| Best HMM Match : Melibiase (HMM E-Value=2.6e-07)
Length = 407
Score = 31.5 bits (68), Expect = 0.79
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 573 SDRVRIPASGPGHWADPEPVL 635
+ V IP +GPGHW DP+ ++
Sbjct: 239 NQEVLIPVAGPGHWNDPDQLI 259
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVV--------ECDIVRNYGFVHMENNKSAAN 272
+FI +L + T+ADL F+ +GTV+ + ++ + +GFV +N SA N
Sbjct: 279 LFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQN 333
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFV 242
+F+G L+ T E L+ FE++G V I+ RNYGFV
Sbjct: 82 VFVGGLASGTDEEGLKDYFEQFGEVESVRIMRTFLGYSRNYGFV 125
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Frame = +1
Query: 367 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGRCERPFKEFE 525
+FVG L T +++ F++FG V I+ RNYGFV G + K+
Sbjct: 82 VFVGGLASGTDEEGLKDYFEQFGEVESVRIMRTFLGYSRNYGFVLFKDDGPSKEVLKKSH 141
Query: 526 RYDGST 543
+G T
Sbjct: 142 VINGKT 147
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 114 GHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 224
G R +F+ NLS+ T E D+ F YG V + I+
Sbjct: 315 GVRERTLFVDNLSEDTKELDVLRYFRPYGQVAKVHIL 351
>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4482
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 235 VSCTWKTTSRPRTIQNLNGELVHGQAIKIEAAKSRKAP 348
+ C WK + PR + + L+ G ++ EAA+ R AP
Sbjct: 1636 IKCFWKVLNTPRAFHSFHMALIEGTFLQ-EAARKRLAP 1672
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 126 FKIFIGNLSDKTTEADLRPLFEKYGTVVECD 218
+ + + NLS +T+ DL+ F KYG V D
Sbjct: 798 YSVIVENLSSRTSWQDLKDYFRKYGKVTYAD 828
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 165 EADLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
E+D+ YG + + + R YGFV ++++ A
Sbjct: 702 ESDVEKFLRGYGKIRDISLKRGYGFVEFDDHRDA 735
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 539 RRTSPIERWQFVRPSSYSGKRSGPLGGPR 625
RR +P E W+ RP G R GP GPR
Sbjct: 899 RRDAPREEWR--RPGDRDGPRDGPRDGPR 925
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = -3
Query: 599 ACRNTNSVG--QTATFQWGWSVEPSYRSNSL-KGRSHRPVASKCTKP*LRTISHSTTVPN 429
+C NT VG +T++ + G V P R N + K SH S P R ++ + +
Sbjct: 298 SCVNTREVGMNKTSSDRSGSCVNP--RENEMSKASSH---CSVLINPETRDVTGGASQRS 352
Query: 428 F*NSSRTSGARVLSVKLP 375
F NSS S + +LS K+P
Sbjct: 353 FSNSSTGSSSSILSNKIP 370
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 117 HRTFKIFIGNLSDKTTEADLRPLFEKYGTV 206
H T I + NLS++T E+DL+ LF G +
Sbjct: 178 HETATIRVTNLSEETRESDLQELFRPLGPI 207
>SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)
Length = 636
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 575 RPSSYSGKRSGPLGGPRASA*PLVSPQGGPMGSQG 679
RP+ + R G G P PL+ P G PM +QG
Sbjct: 559 RPTFPNQSRMGQSGSPLQGPPPLIKPAGRPMQTQG 593
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +3
Query: 117 HRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
+R K++IGNL+ + E ++ FE++G V + DI+R+
Sbjct: 6 NRGRKLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRD 42
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
K+++GNL + E+ + F++FG V + DI+R+
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRD 42
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 126 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
F+IF G+L + T+ L F KY + ++ IVR+
Sbjct: 217 FRIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRD 251
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENN 257
+FI NLS +T+ ++ LF+++G + C +V ++ H + +
Sbjct: 418 VFIRNLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKGS 459
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTV 441
T T KIF+G L+ T ++++ F +FG V
Sbjct: 180 TTTKKIFIGGLSTNTSEEDMKKYFSQFGKV 209
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSAANHSE 281
++++G+L TEA ++ +FE +GTV ++ + YGFV ++A E
Sbjct: 243 RLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAME 301
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +1
Query: 328 AKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHL 483
A+ K P PT +++VG+L V+ +F+ FGTV ++ + YGFV
Sbjct: 232 AERLKQPLGPT-RLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQF 290
Query: 484 DATGRCERPFKEFERYD 534
+R ++ ++
Sbjct: 291 REAEAAKRAMEQMNGFE 307
>SB_30029| Best HMM Match : Extensin_2 (HMM E-Value=0.45)
Length = 622
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = +3
Query: 549 APLKGGSLSDRVRIPASGPGHWADPEPVLNRLLARRGGPWVPKEFPEKASLGPPNRQPFS 728
+PL+GGS S V + S + ++ P N L + GP P +P + S PPN P
Sbjct: 485 SPLQGGSSSPNVTL-GSPMRNLSEGFPGGNPL--QGSGPVPPPAYPTRPSSNPPNTFPAE 541
Query: 729 ADLKLFQAA 755
+ L AA
Sbjct: 542 SPLSHSGAA 550
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = +3
Query: 549 APLKGGSLSDRVRIPASGPGHWADPEPVLNRLLARRGGPWVPKEFPEKASLGPPNRQPFS 728
+PL+GGS S V + S + ++ P N L + GP P +P + S PPN P
Sbjct: 109 SPLQGGSSSPNVTL-GSPMRNLSEGFPGGNPL--QGSGPVPPPAYPTRPSSNPPNTFPAE 165
Query: 729 ADLKLFQAA 755
+ L AA
Sbjct: 166 SPLSHSGAA 174
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTV 206
K +IGNL K EADL+ F +Y V
Sbjct: 231 KCYIGNLDFKVNEADLQDRFSRYDVV 256
>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +2
Query: 569 FVRPSSYSGKRSGPLGGPRASA*PLVSPQGGPMGSQGIPRKGVLGAPEP 715
FVRP+ G+ + LGGP GGP G P +G G P+P
Sbjct: 477 FVRPNPGLGRPNPGLGGPNPGFGGPNPGLGGPNPGLGRPNQG-FGRPDP 524
>SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05)
Length = 449
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 527 GMMVRRTSPIERWQFVRPSSYSGKRSGPLGGPRASA*PLVSPQGGPMGSQGIPRKGVLGA 706
G+M +P + P+ G L P+ +P G MGS P KG++G+
Sbjct: 98 GIMGSTLNPPKGIMGSTPNPPKGIMGSTLNPPKGIMGSTPNPHKGIMGSSPNPPKGIMGS 157
Query: 707 -PEPP 718
P PP
Sbjct: 158 TPNPP 162
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 527 GMMVRRTSPIERWQFVRPSSYSGKRSGPLGGPRASA*PLVSPQGGPMGSQGIPRKGVLGA 706
G+M +P + P+ G P+ L +P G MGS P KG++G+
Sbjct: 164 GIMGSLPNPHKEIMGSSPNPPKGIMGSTPNPPKGIMGSLPNPPKGIMGSTPNPPKGIMGS 223
Query: 707 -PEPP 718
P PP
Sbjct: 224 TPNPP 228
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = +2
Query: 593 GKRSGPLGGPRASA*PLVSPQGGPMGSQGIPRKGVLGAPEPPTVFRRFEAFSGG 754
G R P+GG P G PMG +G G GA P RR + +GG
Sbjct: 211 GGRGSPMGGNHPH------PPGEPMGGRGGSSSGPNGAGRGPAHSRRRQIHNGG 258
>SB_57620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -1
Query: 709 GGPKDAFSGNSLGTH-----GPPLRANKRLSTGSGSAQWPGPLAGIRT 581
GG FS N G H P+RA K L+T +GSAQ P+ I T
Sbjct: 23 GGAFVIFSFNIAGPHFFFPSSVPIRARKNLTTPNGSAQAVHPMRMIGT 70
>SB_42304| Best HMM Match : NHL (HMM E-Value=0)
Length = 1279
Score = 29.1 bits (62), Expect = 4.2
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Frame = +1
Query: 412 RELFQKFGTVVECDIVRNYGFVHLDATGRCERPFKEFERYDGSTDQPH*KVAVCPTEFVF 591
R L+ F T V C R+Y F D TG E P KE + +T + F
Sbjct: 441 RSLYHMFDTSVPC-WPRSYRFAMNDCTGDRENPKKEGTKEGIATTMSKERAQEISCRLCF 499
Query: 592 RQAVRAIGRTPSQCLTAC*P--AGGAHG 669
R+ R + R +C C A G HG
Sbjct: 500 RRLYRLV-RWLYRCGMHCPKFLAVGCHG 526
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 367 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
+FV NL + E+ ELF K G V + +V N
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTN 205
>SB_24277| Best HMM Match : EGF (HMM E-Value=2.4e-06)
Length = 433
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 527 GMMVRRTSPIERWQFVRPSSYSGKRSGPLGGPRASA*PLVSPQGGPMGSQGIPRKGVLGA 706
G+M +P + P + G P+ L +P G MGS P KG++G+
Sbjct: 358 GIMGSTPNPPKGIMDSTPHPHKGIMGSTPNPPKRIMGSLPNPPKGIMGSTPNPPKGIMGS 417
Query: 707 -PEPP 718
P PP
Sbjct: 418 TPNPP 422
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +2
Query: 491 RGDVNDLSKSLNGMMVRRTSPIERWQFVRPSSYSGKRSGPLGGPRASA*PLVSPQGGPMG 670
+G + L G+M +P + P+ G P+ +P G MG
Sbjct: 214 KGIMGSLPNPPKGIMGSTPNPPKGIMGSTPNPPKGIMGSTPNPPKGIMGSTPNPPKGIMG 273
Query: 671 SQGIPRKGVLGA-PEPP 718
S P KG++G+ P PP
Sbjct: 274 STPNPPKGIMGSTPNPP 290
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 120 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 221
+ K+F+G L++ TTE +R F+ + E D+
Sbjct: 6 KLMKLFVGGLNEDTTEETVRAYFKSFCEGSEADV 39
>SB_41255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +1
Query: 211 NAISSEITVSCTWKTTSRPRTIQNLNGELVHGQAIKIEAAKSRKAPSTP 357
N SS IT+ T+K P T L V+ + + AP+TP
Sbjct: 114 NHWSSSITLKATYKHRQHPNTCNGLPITTVYSPTVSPSYGRGCSAPTTP 162
>SB_19711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
+ I NL E DL+ L + YG V+ C+I R+
Sbjct: 121 LIIQNLPKGIQEKDLKELLQLYGNVLVCNIERD 153
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 221
+FI +L + T+ADL F+ +GTV+ +
Sbjct: 231 LFIYHLPQEFTDADLMQTFQPFGTVISAKV 260
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 620 PRASA*PLVSPQGGPMGSQGIPRKGVLGAPEPPT 721
P + P P G P GS P GVL A +PPT
Sbjct: 451 PGKTTAPTTKPPGSPAGSTQGPTDGVLSA-KPPT 483
>SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 600
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 487 ATGRCERPFKEFERYDGSTDQ 549
A+ C R F+ ERYD +TDQ
Sbjct: 511 ASQECSRQFESVERYDPNTDQ 531
>SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 858
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 594 ASGPGHWADPEPVLNRLLARRGGPWVPKEFPEKASLGPPN 713
AS PG E V L + GGP P E P K P+
Sbjct: 298 ASDPGQTQGEEAVPGTPLQKPGGPLAPAESPPKTGTEEPS 337
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENNKSA 266
+++G L K TE DLR F ++G + +V +N FV + +A
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFGELRSISMVPRQNCAFVCFTSRAAA 352
Score = 28.3 bits (60), Expect = 7.4
Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Frame = -2
Query: 762 GNRPPEKASNRRKTVGGS-GAPRTPF------RGIPWEPMGPPCGLTSG*ALARG-PPNG 607
G PP+ N GG G P P RG P P GPP G RG PP
Sbjct: 448 GGGPPQLPPNLPPPPGGMRGMPPPPMGMYPPPRGFPPPPFGPPPPFYRGPPPPRGMPPPP 507
Query: 606 PDRLP 592
R+P
Sbjct: 508 RQRMP 512
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG 236
+F+GNLS E L FE+ G C ++ G
Sbjct: 182 VFLGNLSFDADEETLAAFFEEKGLSATCRVITQEG 216
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = +1
Query: 274 IQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 447
I+ +N V+G+ I++ A + +F+GNL + + + F FG +++
Sbjct: 71 IKVMNMIKVYGKPIRVNKASAHNKNLDVGANLFIGNLDTEVDEKLLYDTFSAFGVILQ 128
>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
Length = 649
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/105 (19%), Positives = 39/105 (37%)
Frame = +1
Query: 103 SKMPGTVLSKSSSGTFLIKPQKPILDRYSKNTVRS*NAISSEITVSCTWKTTSRPRTIQN 282
+K + + + + TFL + S +T + + +++ T + + TT T
Sbjct: 416 TKATASTQTAAEANTFLSTQKTDATTSQSTSTTEATKSQTTKATTTLSTSTTKATTTSST 475
Query: 283 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 417
+ + K+ PST TTK + T +P E
Sbjct: 476 STTKAT--TTLSTSTTKATTTPSTSTTKATTSTAVEATTSPAATE 518
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
T TK+FVG + ++ +R+ F +FG + E ++++
Sbjct: 7 TKFTKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKD 44
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 138 IGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
+ NL+ +TT DL+ +F+KYG + + I R+
Sbjct: 20 VDNLTYRTTVEDLKQVFKKYGDLGDIYIPRD 50
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Frame = -1
Query: 691 FSGNSLGTHGPPLR--------ANKRLSTGSGSAQW-PGPLAGIRTRSDKLPP 560
F GN GT PP++ A+KR S + +W GPL G D L P
Sbjct: 230 FEGNHYGTPKPPIQPAGTLSAPASKRQGRPSSATKWKKGPLNGDMPSGDMLGP 282
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,120,909
Number of Sequences: 59808
Number of extensions: 605149
Number of successful extensions: 2020
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 1710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2003
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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