Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30516
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   4.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.7  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   9.7  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   9.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.7  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 68  IYCYSLYIVTHNLKCRAPYFQNLH 139
           +Y  +L  VTHNL   +P  +NL+
Sbjct: 252 VYGMALSPVTHNLYYNSPSSENLY 275


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 593 RNTNSVGQTATFQWGWSVEPSYRS 522
           R +N +G+TA F W   +   + S
Sbjct: 276 RMSNDLGKTAEFDWNKPINSGFYS 299


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 593 RNTNSVGQTATFQWGWSVEPSYRS 522
           R +N +G+TA F W   +   + S
Sbjct: 276 RMSNDLGKTAEFDWNKPINSGFYS 299


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 666 WVPKEFPEKASLGPPNRQPFSADLKLFQAAD 758
           W PKE+     L  P+   +  D+ L+  AD
Sbjct: 92  WEPKEYGGVKMLHVPSDHIWRPDIVLYNNAD 122


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 666 WVPKEFPEKASLGPPNRQPFSADLKLFQAAD 758
           W PKE+     L  P+   +  D+ L+  AD
Sbjct: 92  WEPKEYGGVKMLHVPSDHIWRPDIVLYNNAD 122


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 567 SLSDRVRIPASGPGHWADPEPVLNRLLARRGGPWVPKEFP 686
           SLS+ +RI  S   +     P+    L  R   ++PKEFP
Sbjct: 619 SLSEPLRIHVSPTTYILLKYPISGFDLEPRQKEFLPKEFP 658


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 666 WVPKEFPEKASLGPPNRQPFSADLKLFQAAD 758
           W PKE+     L  P+   +  D+ L+  AD
Sbjct: 88  WDPKEYGGVEMLHVPSDHIWRPDIVLYNNAD 118


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 41  LVFIFLTCVIYCYSLYIVTHNLKC 112
           +  + L CVIYC  ++  T  + C
Sbjct: 3   ITIVSLLCVIYCALVHADTVAILC 26


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 41  LVFIFLTCVIYCYSLYIVTHNLKC 112
           +  + L CVIYC  ++  T  + C
Sbjct: 3   ITIVSLLCVIYCALVHADTVAILC 26


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 695 VLGAPEPPTVFRR 733
           V G P PP V+RR
Sbjct: 334 VTGTPPPPLVWRR 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,520
Number of Sequences: 438
Number of extensions: 5810
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)