Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30516
(781 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 45 7e-05
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 44 2e-04
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 42 3e-04
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 42 6e-04
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 42 6e-04
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 42 6e-04
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 41 8e-04
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 40 0.001
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 40 0.001
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 40 0.002
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 39 0.003
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 39 0.003
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 39 0.003
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 38 0.007
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 38 0.007
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 38 0.010
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 38 0.010
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 37 0.013
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 37 0.013
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 37 0.013
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 37 0.017
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 37 0.017
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 36 0.023
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 36 0.023
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 36 0.023
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 36 0.023
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 36 0.023
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 36 0.023
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 36 0.023
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 36 0.030
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 36 0.030
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.030
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.030
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.030
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 36 0.040
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 36 0.040
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 36 0.040
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 36 0.040
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 36 0.040
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 36 0.040
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 35 0.053
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 35 0.053
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 35 0.053
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 35 0.053
At2g47310.1 68415.m05906 flowering time control protein-related ... 35 0.053
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 35 0.053
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 35 0.053
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 35 0.053
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 35 0.053
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 35 0.070
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 35 0.070
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 35 0.070
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 34 0.092
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 34 0.092
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 34 0.092
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 34 0.092
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 34 0.12
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 34 0.12
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 34 0.12
At3g09000.1 68416.m01053 proline-rich family protein 34 0.12
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 34 0.12
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 34 0.12
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 34 0.12
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 33 0.16
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 33 0.16
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 33 0.16
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 33 0.21
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 33 0.21
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 33 0.21
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 33 0.21
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 33 0.21
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 33 0.21
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 33 0.21
At1g35640.1 68414.m04428 hypothetical protein 33 0.21
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 33 0.21
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 33 0.21
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 33 0.28
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 33 0.28
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 33 0.28
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 33 0.28
At2g34680.1 68415.m04260 leucine-rich repeat family protein cont... 33 0.28
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 33 0.28
At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) famil... 33 0.28
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 33 0.28
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 32 0.37
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 32 0.37
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 32 0.37
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 32 0.49
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 32 0.49
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 32 0.49
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 31 0.65
At5g19090.2 68418.m02270 heavy-metal-associated domain-containin... 31 0.65
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 31 0.65
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 31 0.65
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 31 0.65
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 31 0.86
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 31 0.86
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 0.86
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 31 0.86
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 31 0.86
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 31 0.86
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 31 0.86
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 31 0.86
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 31 0.86
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 31 1.1
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 30 1.5
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 30 1.5
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 30 1.5
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 30 1.5
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 30 1.5
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin... 30 1.5
At5g13020.1 68418.m01492 emsy N terminus domain-containing prote... 30 1.5
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 30 1.5
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 30 1.5
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 30 1.5
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 30 1.5
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 30 1.5
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 30 1.5
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 30 1.5
At5g19340.1 68418.m02305 expressed protein 30 2.0
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 30 2.0
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 30 2.0
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 30 2.0
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 29 2.6
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 29 2.6
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 29 2.6
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 29 3.5
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 29 3.5
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 29 3.5
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 29 4.6
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 29 4.6
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 4.6
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 29 4.6
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 29 4.6
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 29 4.6
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 29 4.6
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 28 6.0
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 28 6.0
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 28 6.0
At2g35350.1 68415.m04334 protein phosphatase 2C family protein /... 28 6.0
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 28 8.0
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 28 8.0
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 28 8.0
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 28 8.0
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 28 8.0
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 28 8.0
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate... 28 8.0
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 28 8.0
At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to ... 28 8.0
At1g78650.1 68414.m09166 expressed protein weak similarity to DN... 28 8.0
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 44.8 bits (101), Expect = 7e-05
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
+F+GN +T ++DL LF+KYG V D+ Y FV+ E+ + A
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDA 48
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 367 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGRCERPFKEFERY 531
+FVGN +TR ++ LF K+G V D+ Y FV+ + E ++ + +
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNF 58
Score = 35.1 bits (77), Expect = 0.053
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 123 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSAANHSES*RR 293
T +F+ N +T E D+ FE YG V I RN+ FV E + A E+ +R
Sbjct: 92 TKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQR 149
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
T TKIFVGNLT +T A ++R F++FG VV+ ++V
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVV 44
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +3
Query: 108 NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 224
N R KIF+GNL+ +TT DLR FE++G VV+ ++V
Sbjct: 6 NHDTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVV 44
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
++++G LS +T DL LF +YG V + D+ R+Y FV + + A
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDA 57
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +1
Query: 361 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGRCE--RPFKEFERYD 534
T+++VG L+ +TR ++ LF ++G V + D+ R+Y FV + R + + +D
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFD 70
Query: 535 GS 540
GS
Sbjct: 71 GS 72
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
+F GN E+DL LF KYG V D+ + FV+ME+ + A
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDA 48
Score = 35.1 bits (77), Expect = 0.053
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +1
Query: 367 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGRCERPFKEFERYD 534
+F GN R ++ LF+K+G V D+ + FV+++ E + +R++
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFE 59
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 108 NAGHRTFK-IFIGNLSDKTTEA-DLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
++G R K +F+ N + T DL FE YG +V I RN+ F+ E + A
Sbjct: 89 SSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDA 143
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
+F GN E+DL LF KYG V D+ + FV+ME+ + A
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDA 48
Score = 35.1 bits (77), Expect = 0.053
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +1
Query: 367 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGRCERPFKEFERYD 534
+F GN R ++ LF+K+G V D+ + FV+++ E + +R++
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFE 59
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 108 NAGHRTFK-IFIGNLSDKTTEA-DLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
++G R K +F+ N + T DL FE YG +V I RN+ F+ E + A
Sbjct: 89 SSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDA 143
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
++++G LS +T DL LF +YG V + D+ R+Y FV + + A
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDA 57
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +1
Query: 361 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGRCE--RPFKEFERYD 534
T+++VG L+ +TR ++ LF ++G V + D+ R+Y FV + R + + +D
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFD 70
Query: 535 GS 540
GS
Sbjct: 71 GS 72
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
+F GN E DL LF KYG V D+ + FV+ME+ + A
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDA 48
Score = 34.7 bits (76), Expect = 0.070
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +1
Query: 367 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGRCERPFKEFERYD 534
+F GN R ++ LF+K+G V D+ + FV+++ E + +R++
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFE 59
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 132 IFIGNL-SDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
+F+ N +D T DL FE YG +V I RN+ F+ E + A
Sbjct: 99 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDA 144
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 120 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 233
+T KIF+G + TE +L+ F KYG VVE ++R++
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDH 144
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 283 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 462
+NG+ V + + A ++ T KIFVG + E+++ F K+G VVE ++R
Sbjct: 83 INGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIR 142
Query: 463 NY 468
++
Sbjct: 143 DH 144
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
KIFIG L TT F KYG + + I+R+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRD 53
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 120 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 233
+T KIF+G + TE +L+ F KYG VVE ++R++
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDH 144
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 283 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 462
+NG+ V + + A ++ T KIFVG + E+++ F K+G VVE ++R
Sbjct: 83 INGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIR 142
Query: 463 NY 468
++
Sbjct: 143 DH 144
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
KIFIG L TT F KYG + + I+R+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRD 53
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
+++GN T +DL LF K+G V D+ Y FV+ E+ + A
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDA 48
Score = 35.9 bits (79), Expect = 0.030
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 367 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 486
++VGN TR ++ LF KFG V D+ Y FV+ +
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFE 43
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 123 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSAANHSES 284
T +F+ N +T E D+ FE YG V+ + RN+ FV + A +S
Sbjct: 94 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDS 148
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 355 PTTKIFVGNLTD-KTRAPEVRELFQKFGTVVECDIVRNYGFV 477
PT +FV N +TR ++ F+ +G V+ + RN+ FV
Sbjct: 93 PTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFV 134
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Frame = +1
Query: 274 IQNLNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVEC 450
I+ N L++G+ I++ + ++ A +FV NL + ++++F+KFG +V C
Sbjct: 82 IEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSC 141
Query: 451 DIV-------RNYGFVHLD 486
+ R YGFV +
Sbjct: 142 KVATLEDGKSRGYGFVQFE 160
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENNKSA 266
+F+ NL + T A L+ +F+K+G +V C + R YGFV E +A
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAA 165
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Frame = +3
Query: 108 NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKS 263
N G+ +IF+G LS TE L F++YG + EC I+ R +GF+ + +
Sbjct: 6 NDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRG 65
Query: 264 A 266
A
Sbjct: 66 A 66
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 331 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
K R+ ++IFVG L+ ++ F ++G + EC I+
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIM 44
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Frame = +3
Query: 108 NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKS 263
N G+ +IF+G LS TE L F++YG + EC I+ R +GF+ + +
Sbjct: 6 NDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRG 65
Query: 264 A 266
A
Sbjct: 66 A 66
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 331 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
K R+ ++IFVG L+ ++ F ++G + EC I+
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIM 44
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +3
Query: 114 GHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKS 263
G RT KIF+G L TEA+ + F+++GT+ + ++ R +GF+ ++ +S
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEES 175
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
K+FIG +S T E L+ F KYG +VE I+R+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRD 49
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDA 489
T KIFVG L E + F +FGT+ + ++ R +GF+ D+
Sbjct: 121 TKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 172
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
K+F+G ++ T ++E F K+G +VE I+R+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRD 49
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 37.9 bits (84), Expect = 0.007
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Frame = +1
Query: 274 IQNLNGELVHGQAIKIEAA---KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGT 438
I NL+G G+A+K+ A K K P P T K+FVGNL+ + + F++ G
Sbjct: 143 IDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGD 202
Query: 439 VVECDIV--------RNYGFVHLDATGRCERPFKEFERYD 534
VV +V R YGFV + E + + ++
Sbjct: 203 VVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFE 242
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFV 242
K+F+GNLS T L F + G VV +V R YGFV
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 37.5 bits (83), Expect = 0.010
Identities = 13/36 (36%), Positives = 26/36 (72%)
Frame = +3
Query: 123 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
T K+F+G++ TE ++RP FE++G V+E ++++
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
Score = 31.5 bits (68), Expect = 0.65
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = +3
Query: 114 GHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
G FK+F+G+L+ + TE ++ +F ++G V + ++R+
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 337 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
R+ T K+FVG+L + EV E+F +FG V + ++R+
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
T K+FVG++ E+R F++ G V+E ++++
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 572 VRPSSYSGKR-SGPLGGPRASA*PLVSPQGGPMGSQGIPRKGVLGAP 709
V P S +G R +G P+ L S QGGP+G G+P L P
Sbjct: 346 VGPPSNTGIRGAGSDFPPKPGQATLPSNQGGPLGGYGVPPLNPLPVP 392
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 37.5 bits (83), Expect = 0.010
Identities = 13/36 (36%), Positives = 26/36 (72%)
Frame = +3
Query: 123 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
T K+F+G++ TE ++RP FE++G V+E ++++
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
Score = 31.5 bits (68), Expect = 0.65
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = +3
Query: 114 GHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
G FK+F+G+L+ + TE ++ +F ++G V + ++R+
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 337 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
R+ T K+FVG+L + EV E+F +FG V + ++R+
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
T K+FVG++ E+R F++ G V+E ++++
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 572 VRPSSYSGKR-SGPLGGPRASA*PLVSPQGGPMGSQGIPRKGVLGAP 709
V P S +G R +G P+ L S QGGP+G G+P L P
Sbjct: 346 VGPPSNTGIRGAGSDFPPKPGQATLPSNQGGPLGGYGVPPLNPLPVP 392
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVV--------ECDIVRNYGFVHLDATGRCERPFKE 519
K+FVGNL + + LF++ GTV E D R +GFV + + E ++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 520 FERYD 534
F RYD
Sbjct: 211 FNRYD 215
Score = 31.9 bits (69), Expect = 0.49
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 280 NLNGELVHGQAIKIEAAKSRKAPST--PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD 453
+LNG L+ ++ +AP P +++VGNL + +LF + G VVE
Sbjct: 215 DLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEAR 274
Query: 454 IV 459
+V
Sbjct: 275 VV 276
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Frame = +3
Query: 126 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN 254
F++++GNL L LF ++G VVE +V R +GFV M +
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD 294
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
K+F+GNL+ L LFE+ GTV +++ N
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYN 184
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 37.1 bits (82), Expect = 0.013
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Frame = +1
Query: 253 TTSRPRTIQNLNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQK 429
T + +Q LN ++G+ I+I +++ A + +FV NL + E F
Sbjct: 97 TDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSG 156
Query: 430 FGTVVECDIV-------RNYGFVHLD 486
GT+V C + R YGFV D
Sbjct: 157 CGTIVSCKVATDHMGQSRGYGFVQFD 182
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENNKSAANHSES 284
+++ NLS+ TT+ +L+ F +YG++ ++R+ +GFV+ EN + AA E+
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEA 284
Score = 35.5 bits (78), Expect = 0.040
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Frame = +1
Query: 367 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGRCERPFKE 519
++V NL D ++RELF +FGT+ C ++R+ GFV A R E
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNE 387
Score = 31.5 bits (68), Expect = 0.65
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENNKSAANHSE 281
+F+ NL L F GT+V C + R YGFV + SA N E
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIE 192
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSAAN 272
KIF+G +S T E LR F KYG VV+ I+ R + FV + + A+N
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
++KIFVG ++ T +RE F K+G VV+ I+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKII 66
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 36.7 bits (81), Expect = 0.017
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENNKSAANHSES 284
+++ NL++ TT+ DL+ F +YG + ++++ +GFV+ EN AA ES
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 88
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +1
Query: 313 IKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
++ E A ++ ++V NL +++E+F FGTV ++R+
Sbjct: 116 VRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD 166
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENNKS 263
+F+ L+ T + DL +F ++GTVV D++R+ Y F+ EN +S
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKES 296
Score = 34.3 bits (75), Expect = 0.092
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = +1
Query: 355 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGRCERP 510
P +FV L T ++ +F +FGTVV D++R+ Y F+ + CE+
Sbjct: 241 PDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQA 300
Query: 511 F 513
+
Sbjct: 301 Y 301
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 227
K+F+G L +EA+++ LF KYGT+ + I+R
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 462
K+FVG L EV+ LF K+GT+ + I+R
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 108 NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
N + K+F+G + +E+ L LF+++ V E +I+++
Sbjct: 12 NEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 227
K+F+G L +EA+++ LF KYGT+ + I+R
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 462
K+FVG L EV+ LF K+GT+ + I+R
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 108 NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
N + K+F+G + +E+ L LF+++ V E +I+++
Sbjct: 12 NEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Frame = +3
Query: 126 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKS 263
++ FIG L+ T++ LR FEKYG +VE +V R +GF+ + K+
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Frame = +1
Query: 355 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLD 486
P + F+G L T +R+ F+K+G +VE +V R +GF+ D
Sbjct: 5 PEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFD 56
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 120 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 233
RT KIF+G L TE+D + FE++GT + ++ ++
Sbjct: 106 RTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDH 143
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
K+FIG +S T E L+ F +G V+E I+++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGRCERP- 510
T KIFVG L + + F++FGT + ++ R +GF+ D+ E+
Sbjct: 107 TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 166
Query: 511 FKEFERYDG 537
K F +G
Sbjct: 167 LKTFHELNG 175
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
K+F+G ++ T ++E F FG V+E I+++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 120 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 233
RT KIF+G L TE+D + FE++GT + ++ ++
Sbjct: 106 RTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDH 143
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
K+FIG +S T E L+ F +G V+E I+++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGRCERP- 510
T KIFVG L + + F++FGT + ++ R +GF+ D+ E+
Sbjct: 107 TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 166
Query: 511 FKEFERYDG 537
K F +G
Sbjct: 167 LKTFHELNG 175
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
K+F+G ++ T ++E F FG V+E I+++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/44 (31%), Positives = 29/44 (65%)
Frame = +3
Query: 108 NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGF 239
++G ++ +++G+L+ +TTE+DL LF +YG + + + GF
Sbjct: 12 DSGFQSNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGF 55
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHL 483
+ ++VG+LT +T ++ ELF ++G + + + GF +
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFI 58
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Frame = +3
Query: 120 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKS 263
RT KIF+G LS TTE + + FE++G + ++ R +GFV ++ S
Sbjct: 118 RTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDS 173
Score = 34.7 bits (76), Expect = 0.070
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Frame = +3
Query: 126 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENN 257
+K+F+G ++ +T+E L+ F +YG V+E + R +GFV N+
Sbjct: 6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAND 57
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Frame = +1
Query: 334 SRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDA 489
S ++ T KIFVG L+ T E + F++FG + ++ R +GFV D+
Sbjct: 111 SSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDS 170
Query: 490 TGRCE 504
E
Sbjct: 171 EDSVE 175
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 35.9 bits (79), Expect = 0.030
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 123 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
T+ + + N++ +TT DL PLF KYG VV+ I R+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRD 50
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
T + V N+T +T A ++ LF K+G VV+ I R+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRD 50
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 35.9 bits (79), Expect = 0.030
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 123 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
T+ + + N++ +TT DL PLF KYG VV+ I R+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRD 50
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
T + V N+T +T A ++ LF K+G VV+ I R+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRD 50
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.9 bits (79), Expect = 0.030
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +1
Query: 349 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGRCERPF 513
S + ++VGNL R EV +LF K+G VV+ D+ Y FV D E
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
Query: 514 KEFERYD 534
+ YD
Sbjct: 63 HGRDGYD 69
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENNKSA 266
+++GNL E ++ LF KYG VV+ D+ Y FV ++ + A
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDA 58
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 35.9 bits (79), Expect = 0.030
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +1
Query: 349 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGRCERPF 513
S + ++VGNL R EV +LF K+G VV+ D+ Y FV D E
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
Query: 514 KEFERYD 534
+ YD
Sbjct: 63 HGRDGYD 69
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENNKSA 266
+++GNL E ++ LF KYG VV+ D+ Y FV ++ + A
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDA 58
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.9 bits (79), Expect = 0.030
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +1
Query: 349 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGRCERPF 513
S + ++VGNL R EV +LF K+G VV+ D+ Y FV D E
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
Query: 514 KEFERYD 534
+ YD
Sbjct: 63 HGRDGYD 69
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENNKSA 266
+++GNL E ++ LF KYG VV+ D+ Y FV ++ + A
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDA 58
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.5 bits (78), Expect = 0.040
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = +1
Query: 373 VGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGRCERPFKEFER 528
V NL++ TR P++ ELF+ FG V C + R +GFV + +R +
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 237
Query: 529 Y 531
Y
Sbjct: 238 Y 238
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 35.5 bits (78), Expect = 0.040
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 224
+IF+G LS + T+ DL F ++G +++C I+
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIM 39
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 361 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
++IFVG L+ + ++ F +FG +++C I+
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIM 39
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 35.5 bits (78), Expect = 0.040
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 322 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV------RNYGFVHL 483
+++ A + ++V N+ + T +++ELFQ+ G V + R++GFVH
Sbjct: 279 KSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHY 338
Query: 484 DATGRCERPFKEFERYD 534
+ K+ ERY+
Sbjct: 339 AERSSALKAVKDTERYE 355
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 35.5 bits (78), Expect = 0.040
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +1
Query: 322 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 477
++A + +P K+FVGNL+ + ++ +LF+ G V +++ R +GFV
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Query: 478 HLDATGRCERPFKEFERYD 534
+ E ++F Y+
Sbjct: 146 TMSTAAEVEAAAQQFNGYE 164
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = +3
Query: 96 PII*NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHM 248
P+ N+ K+F+GNLS A L LFE G V +++ R +GFV M
Sbjct: 89 PVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTM 147
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 35.5 bits (78), Expect = 0.040
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +1
Query: 322 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 477
++A + +P K+FVGNL+ + ++ +LF+ G V +++ R +GFV
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Query: 478 HLDATGRCERPFKEFERYD 534
+ E ++F Y+
Sbjct: 146 TMSTAAEVEAAAQQFNGYE 164
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = +3
Query: 96 PII*NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHM 248
P+ N+ K+F+GNLS A L LFE G V +++ R +GFV M
Sbjct: 89 PVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTM 147
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 35.5 bits (78), Expect = 0.040
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENNK 260
+F+G LS TTE LR + KYG + +VR+ YGFV E K
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEK 116
Score = 31.5 bits (68), Expect = 0.65
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Frame = +1
Query: 340 KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATG 495
KA P +FVG L+ T +RE+ K+G + +VR+ YGFV +
Sbjct: 57 KAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEK 116
Query: 496 RCERPFKE 519
R +++
Sbjct: 117 EMLRAYED 124
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 35.1 bits (77), Expect = 0.053
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
++++GNLS TT+ LR F YG VV+ ++R+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRD 37
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 35.1 bits (77), Expect = 0.053
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 349 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 456
S + I+VGNL R EV +LF K+G VV+ D+
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
Score = 34.3 bits (75), Expect = 0.092
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENNKSA 266
I++GNL E ++ LF KYG VV+ D+ Y FV E+ + A
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDA 58
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 35.1 bits (77), Expect = 0.053
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 349 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 456
S + I+VGNL R EV +LF K+G VV+ D+
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
Score = 34.3 bits (75), Expect = 0.092
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENNKSA 266
I++GNL E ++ LF KYG VV+ D+ Y FV E+ + A
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDA 58
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 35.1 bits (77), Expect = 0.053
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENNKSAA 269
+++GN+ + TE L+ +F G V ++R +YGFVH + +SAA
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAA 110
Score = 31.9 bits (69), Expect = 0.49
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +1
Query: 346 PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVH 480
PST ++VGN+ + P ++E+F G V ++R +YGFVH
Sbjct: 55 PST-CRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVH 102
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 35.1 bits (77), Expect = 0.053
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 108 NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 212
NA K+++ +S TE D+R +FEKYG V E
Sbjct: 104 NADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTE 138
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 35.1 bits (77), Expect = 0.053
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
T TKIFVG L +T+ +R F++FG +VE ++
Sbjct: 19 TKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVI 54
Score = 31.9 bits (69), Expect = 0.49
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSA 266
KIF+G L+ +T +R FE++G +VE ++ + YGFV + ++A
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAA 76
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 35.1 bits (77), Expect = 0.053
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
T TK+FVG L +T E+R F++FG ++E I+
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Frame = +3
Query: 114 GHRTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSA 266
G T+ K+F+G L+ +T ++R FE++G ++E I+ + YGFV + SA
Sbjct: 12 GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSA 71
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 35.1 bits (77), Expect = 0.053
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
T TK+FVG L +T E+R F++FG ++E I+
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Frame = +3
Query: 114 GHRTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSA 266
G T+ K+F+G L+ +T ++R FE++G ++E I+ + YGFV + SA
Sbjct: 12 GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSA 71
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 35.1 bits (77), Expect = 0.053
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENNKSAA 269
+++ NLS+ ++ +L +F ++G C I+R+ +GFV+ EN+ AA
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAA 278
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 34.7 bits (76), Expect = 0.070
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
K+FIG +S T E LR F YG VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
Score = 34.7 bits (76), Expect = 0.070
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 114 GHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 233
G RT KIF+G L TE + + F+++GT+ + ++ ++
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDH 145
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGRCERPF 513
T KIFVG L E + F +FGT+ + ++ R +GF+ D+ +R
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Query: 514 -KEFERYDG 537
K F +G
Sbjct: 169 HKTFHELNG 177
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
K+F+G ++ T +R+ F +G VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 34.7 bits (76), Expect = 0.070
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
K+FIG +S T E LR F YG VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
Score = 34.7 bits (76), Expect = 0.070
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 114 GHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 233
G RT KIF+G L TE + + F+++GT+ + ++ ++
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDH 145
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGRCERPF 513
T KIFVG L E + F +FGT+ + ++ R +GF+ D+ +R
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Query: 514 -KEFERYDG 537
K F +G
Sbjct: 169 HKTFHELNG 177
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
K+F+G ++ T +R+ F +G VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 34.7 bits (76), Expect = 0.070
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
K+FIG +S T E LR F YG VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
Score = 34.7 bits (76), Expect = 0.070
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 114 GHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 233
G RT KIF+G L TE + + F+++GT+ + ++ ++
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDH 145
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGRCERPF 513
T KIFVG L E + F +FGT+ + ++ R +GF+ D+ +R
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Query: 514 -KEFERYDG 537
K F +G
Sbjct: 169 HKTFHELNG 177
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
K+F+G ++ T +R+ F +G VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 34.3 bits (75), Expect = 0.092
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 18/95 (18%)
Frame = +1
Query: 304 GQAIKIEAAKSRK--------APS-TPTTKIFVGNLTDKTRAPEVRELFQ-KFGTVVECD 453
G+ +K++ AK++K PS PT +FV NL + RA ++E F G VV +
Sbjct: 161 GRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTE 220
Query: 454 IV--------RNYGFVHLDATGRCERPFKEFERYD 534
++ YGFV + E EF+ D
Sbjct: 221 VIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKD 255
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHME 251
++ N+ +T D+R LFEKYG+V++ ++ RN G V +E
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIE 140
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 34.3 bits (75), Expect = 0.092
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSA 266
IF+ TT+ +L+ FE YG + EC +V + YGFV + K A
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGA 462
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 34.3 bits (75), Expect = 0.092
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Frame = +3
Query: 114 GHRTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSA 266
G TF K+F+G L+ +T LR FE+YG ++E ++ + YGFV + ++A
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
T TK+FVG L +T++ +R+ F+++G ++E ++
Sbjct: 21 TTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVI 56
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 34.3 bits (75), Expect = 0.092
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
T TK+FVG L +T E+R F +FG ++E I+
Sbjct: 14 TTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVII 49
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/32 (56%), Positives = 19/32 (59%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 224
K+FIG LS TTE L F K G VVE IV
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIV 66
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Frame = +1
Query: 361 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGRCERPFK 516
+K+F+G L+ T + E F K G VVE IV + +GFV + ++
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 517 EF 522
EF
Sbjct: 94 EF 95
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 132 IFIGNL-SDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSA 266
+F+ N +D T DL FE YG +V I RN+ F+ E + A
Sbjct: 58 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDA 103
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENNKSAANHSES 284
IF+G + + DLR F ++G VV I + GFV + KSA + ES
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIES 375
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/62 (33%), Positives = 25/62 (40%)
Frame = +3
Query: 549 APLKGGSLSDRVRIPASGPGHWADPEPVLNRLLARRGGPWVPKEFPEKASLGPPNRQPFS 728
AP +G S S V + P P P LN PW P E P + PPN +
Sbjct: 261 APSRGTSPSPTVNSLSKAPSRGTSPSPTLNS-----SRPWKPPEMPGFSLEAPPNLRTTL 315
Query: 729 AD 734
AD
Sbjct: 316 AD 317
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
T TK+FVG L +T +R F++FG +VE ++
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
Score = 32.3 bits (70), Expect = 0.37
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 224
K+F+G L+ +T + LR FE++G +VE ++
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
T TK+FVG L +T +R F++FG +VE ++
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
Score = 32.3 bits (70), Expect = 0.37
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 224
K+F+G L+ +T + LR FE++G +VE ++
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +1
Query: 346 PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVH 480
PST ++VGN+ + P ++E+F G V C ++R +YGFVH
Sbjct: 50 PST-CRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVH 97
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDA 489
KIFVGNL + PE E F++FG + +++ + V +A
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNA 207
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/64 (23%), Positives = 34/64 (53%)
Frame = +1
Query: 268 RTIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 447
R +++ G L+ ++ + S P TK++V L+ +T +R+ F++FG ++
Sbjct: 46 RRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIH 105
Query: 448 CDIV 459
++V
Sbjct: 106 MNMV 109
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +3
Query: 108 NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 224
++G +T K+++ LS +TTE LR FE++G ++ ++V
Sbjct: 72 SSGPKT-KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMV 109
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 367 IFVGNLTDKTRAPEVRELFQKFGTVVECDI 456
I+VGNL R EV +LF K+G +V+ D+
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDL 38
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENNKSA 266
I++GNL + ++ LF KYG +V+ D+ Y FV E+ + A
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDA 58
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 33.1 bits (72), Expect = 0.21
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSAAN 272
K+FIG ++ E LR F KYG VV+ ++ R +GFV ++++A++
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASS 96
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
++K+F+G + +RE F K+G VV+ ++
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVI 72
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 33.1 bits (72), Expect = 0.21
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +1
Query: 286 NGELVHGQAIKIEAAKSRKAPST---PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 456
+ ++ G+ ++I+ R + S+ T KIFVG + E +E F +FG + E I
Sbjct: 102 DNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQI 161
Query: 457 VRNY 468
+R++
Sbjct: 162 MRDH 165
Score = 31.5 bits (68), Expect = 0.65
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
KIF+G L+ +TT A+ F KYG + + I+++
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKD 76
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = +3
Query: 108 NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN 254
+A ++T KIF+G L T+ + R FE YG V + I+ R +GFV ++
Sbjct: 104 DAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS 160
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
K+F+G +S +T E LR F YG V + ++R+
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRD 40
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 33.1 bits (72), Expect = 0.21
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG 236
+++G + TE DL +F +YG +V+ +++R+ G
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKG 72
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 120 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
+ F+IF+G+L +E DL+ +F G V E I++N
Sbjct: 212 KEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKN 248
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = +3
Query: 111 AGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKS 263
A RT KIF+G L T + R FE YG V + I+ R +GFV ++ S
Sbjct: 105 ANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDS 163
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 33.1 bits (72), Expect = 0.21
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSA 266
IF+ L TT +L+ FE YG + EC +V + +GFV + K A
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGA 217
>At1g35640.1 68414.m04428 hypothetical protein
Length = 254
Score = 33.1 bits (72), Expect = 0.21
Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 2/116 (1%)
Frame = +1
Query: 211 NAISSEITVSCTWKTTSRPRTIQN-LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLT 387
NA S S WK + + GQ + + ++ P P K LT
Sbjct: 70 NAERSPNYESVVWKRLMHDEAVLRWMRSTETEGQNVGDSSTNVQQHPVRPAVKAASPMLT 129
Query: 388 DKTRAPEVRELFQK-FGTVVECDIVRNYGFVHLDATGRCERPFKEFERYDGSTDQP 552
++ + Q+ + TVVE D+++N G ++ E E Y+ D P
Sbjct: 130 TESMDTATEDGDQEEYSTVVEADLLKNLGLPSINLATESYDSLSEGEAYNDENDYP 185
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 227
K+F+G L +E +++ LF +YGT+ + I+R
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 142
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 355 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 462
P K+FVG L EV+ LF ++GT+ + I+R
Sbjct: 107 PEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 142
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 227
K+F+G L +E +++ LF +YGT+ + I+R
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 133
Score = 31.1 bits (67), Expect = 0.86
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 462
K+FVG L EV+ LF ++GT+ + I+R
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 133
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGRCERPF 513
+TK+F+G L+ T +R+ F FG VV+ ++ R +GFV+ + G
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 514 KEFE 525
E +
Sbjct: 94 SEMD 97
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGRCERPF 513
+TK+F+G L+ T +R+ F FG VV+ ++ R +GFV+ + G
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 514 KEFE 525
E +
Sbjct: 94 SEMD 97
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 138 IGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKS 263
+ NLS T LR LF GTVV+C I + ++E + S
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNS 396
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 373 VGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 486
V NL+ ++R+LF GTVV+C I + +++
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIE 392
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = +1
Query: 322 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 477
+ A ++ + K+FVGNL + ++ +LF+ G V +++ R +GFV
Sbjct: 78 DVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFV 137
Query: 478 HLDATGRCERPFKEFERYD 534
+ + E ++F Y+
Sbjct: 138 TMSSVSEVEAAAQQFNGYE 156
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 693 ASLGPPNRQPFSADLKLF 746
A + PP Q FSADLKLF
Sbjct: 77 ADVAPPKEQSFSADLKLF 94
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN 254
K+F+GNL A L LFE G V +++ R +GFV M +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSS 141
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSAANHSES 284
++++GNLS + L LF + G VVE ++ + +GFV ++++ N +S
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
>At2g34680.1 68415.m04260 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; identical to cDNA hypothetical protein
(AIR9) mRNA, partial cds GI:3695020
Length = 1661
Score = 32.7 bits (71), Expect = 0.28
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 154 IKPQKPILDRYSKNTVRS*NAISSEITVSCTWKTTSRPRTIQ-NLNGELVHGQAIKIEA 327
+K Q + DR N V NA ITV C P+ + LNGELV G IK +A
Sbjct: 528 LKFQWSVADRSLSNFVPILNATKENITVKCC-AGKGIPKVVSLELNGELVEGNIIKGQA 585
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVV-------ECDIVRNYGFVHMENNKSAAN 272
++++GNL +E DLR +FE +G+V E + + +GFV + A N
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARN 340
>At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 389
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 337 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-VRNYGFVHLDATGRC 501
+K P T IFV NL P++ ELF+ FG + E I VR+ + D + C
Sbjct: 272 QKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRVLIFDLSCLC 327
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 32.7 bits (71), Expect = 0.28
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Frame = +3
Query: 114 GHRTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSA 266
G TF K+F+G L+ +T LR F++YG ++E ++ + YGFV + ++A
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
Score = 31.1 bits (67), Expect = 0.86
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
T TK+FVG L +T++ +R F ++G ++E ++
Sbjct: 21 TTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVI 56
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Frame = +3
Query: 126 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN 254
F+I++GNL L LF ++G VV+ +V R +GFV M N
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSN 257
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Frame = +1
Query: 346 PSTPT-TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGR 498
P P K+FVGNL + + LF++ GTV +++ R +GFV +
Sbjct: 107 PEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEE 166
Query: 499 CERPFKEFERYD 534
E+ ++F ++
Sbjct: 167 AEKAVEKFNSFE 178
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
K+F+GNL L LFE+ GTV +++ N
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYN 147
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENNKSA 266
IF+G L T+ DL+ F ++G +V I + GFV N +A
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNA 354
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +1
Query: 265 PRTIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVV 444
P T + NG G + A +R T T IFVG L ++++ F +FG +V
Sbjct: 275 PATPRKTNGYQQQGGYMP-SGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIV 333
Query: 445 ECDIV--RNYGFV 477
I + GFV
Sbjct: 334 SVKIPVGKGCGFV 346
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENNKSA 266
IF+G L T+ DL+ F ++G +V I + GFV N +A
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNA 352
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSA 266
KIF+ L +TT L +FE YG + EC +V + +GFV + K A
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGA 158
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSA 266
KIF+ L +TT L +FE YG + EC +V + +GFV + K A
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGA 158
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 337 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 447
+K P T IFV NL P++ ELF+ FG + E
Sbjct: 272 QKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKE 308
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 31.5 bits (68), Expect = 0.65
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 322 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
E+ + + P+T +FV L+ +T + +R F +FG V + +V
Sbjct: 43 ESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVV 88
>At5g19090.2 68418.m02270 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 465
Score = 31.5 bits (68), Expect = 0.65
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 596 KRSGPLGGPRASA*PLVSPQGGPMGSQGIPRKGVLGAPEP 715
K G GGP++ + P+ GGPMGS +P+ G G P P
Sbjct: 289 KNGGGGGGPQSMSMPMGGAMGGPMGS--LPQMG--GGPGP 324
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 31.5 bits (68), Expect = 0.65
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 126 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGF 239
F ++GNL T E DL+ F ++G V+ ++ ++ F
Sbjct: 8 FTCYVGNLESDTEENDLKNAFSQFGDVIHSNVRFSFHF 45
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 370 FVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 486
+VGNL T +++ F +FG V+ ++ ++ F +D
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVRFSFHFSLID 49
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 31.5 bits (68), Expect = 0.65
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Frame = +1
Query: 268 RTIQNLNGELVHGQAIKIEAAKSRKAPSTPTT---KIFVGNLTDKTRAPEVRELFQKFGT 438
R +++LN + + I+I S + PST + +F+ NL + E F FGT
Sbjct: 100 RAMESLNYAPIRDRPIRIML--SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGT 157
Query: 439 VVEC----DIV---RNYGFVHLD 486
++ C D+V + YGFV +
Sbjct: 158 ILSCKVAMDVVGRSKGYGFVQFE 180
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVEC----DIV---RNYGFVHMENNKSA 266
+FI NL L F +GT++ C D+V + YGFV E ++A
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETA 185
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 31.5 bits (68), Expect = 0.65
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDA 489
TP+ KIFVG L+ T ++E F FG +V+ +V R +GFV D+
Sbjct: 34 TPS-KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDS 86
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 31.1 bits (67), Expect = 0.86
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENNKSA 266
+++G L TE +R +F YG+V+ IV + YGFV N +SA
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 31.1 bits (67), Expect = 0.86
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = +1
Query: 316 KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYG 471
++E K S +++VGNL + E+ ++F + GTVV+ IV R +G
Sbjct: 101 EVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFG 160
Query: 472 FVHLDATGRCERPFKEF 522
FV + + + + F
Sbjct: 161 FVTMGSIEEAKEAMQMF 177
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSA 266
++++GNL T ++L +F + GTVV+ IV R +GFV M + + A
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 31.1 bits (67), Expect = 0.86
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 367 IFVGNLTDKTRAPEVRELFQKFGTVVECDI 456
I+VGNL R E+ ++F K+G +V+ ++
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIEL 38
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +3
Query: 111 AGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENNKSA 266
+G + I++GNL E ++ +F KYG +V+ ++ Y FV E+++ A
Sbjct: 2 SGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDA 58
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 31.1 bits (67), Expect = 0.86
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = +1
Query: 373 VGNLTDKTRAPEVRELFQKFGTVV--------ECDIVRNYGFVHLDATGRCERPFKEFER 528
V NL++ TR P++ ELF FG V + + R +GFV+ + +R +
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
Query: 529 Y 531
Y
Sbjct: 277 Y 277
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 123 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSAANHSES 284
T +F+ N +T E D+ FE YG V+ + RN+ FV + A +S
Sbjct: 68 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDS 122
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 355 PTTKIFVGNLTD-KTRAPEVRELFQKFGTVVECDIVRNYGFV 477
PT +FV N +TR ++ F+ +G V+ + RN+ FV
Sbjct: 67 PTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFV 108
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 31.1 bits (67), Expect = 0.86
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 367 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
++V NL D ++ ELF +FGT+ C ++
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVM 255
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 31.1 bits (67), Expect = 0.86
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Frame = +3
Query: 114 GHRTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSA 266
G T+ K+F+G L+ +T + ++ FE++G ++E ++ + YGFV ++A
Sbjct: 8 GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 31.1 bits (67), Expect = 0.86
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Frame = +3
Query: 114 GHRTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSA 266
G T+ K+F+G L+ +T + ++ FE++G ++E ++ + YGFV ++A
Sbjct: 8 GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 31.1 bits (67), Expect = 0.86
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Frame = +3
Query: 114 GHRTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSA 266
G T+ K+F+G L+ +T + ++ FE++G ++E ++ + YGFV ++A
Sbjct: 8 GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +1
Query: 268 RTIQNLNGELVHGQAIKIEAAKSRKAPST 354
+ ++ LNG++V+G+ I +E AK +AP+T
Sbjct: 122 KALKALNGKIVNGRLIFVETAKEVEAPTT 150
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHL----DATG 495
T TKI+VG L TR + F++FG ++ ++V + YGFV AT
Sbjct: 10 TTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATR 69
Query: 496 RCERP 510
C+ P
Sbjct: 70 ACKDP 74
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 233
KIF+G L+ TEA+ + F ++G + + ++ ++
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDH 68
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGRCERPF-K 516
KIFVG L E ++ F +FG + + ++ R +GF+ D+ ++ K
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 93
Query: 517 EFERYDG 537
F +G
Sbjct: 94 TFHELNG 100
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 233
KIF+G L+ TEA+ + F ++G + + ++ ++
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDH 141
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
K+F+G ++ +T +R+ F FG V+E I+++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKD 40
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGRCERPF-K 516
KIFVG L E ++ F +FG + + ++ R +GF+ D+ ++ K
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 517 EFERYDG 537
F +G
Sbjct: 167 TFHELNG 173
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 233
KIF+G L+ TEA+ + F ++G + + ++ ++
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDH 141
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
K+F+G ++ +T +R+ F FG V+E I+++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKD 40
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGRCERPF-K 516
KIFVG L E ++ F +FG + + ++ R +GF+ D+ ++ K
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 517 EFERYDG 537
F +G
Sbjct: 167 TFHELNG 173
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 367 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
+FV NL +T+ P + + F+K G VV ++ N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVN 161
>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 587
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +2
Query: 593 GKRSGPLGGPRASA*PLVSPQGGPMGSQGIPRKGVLGAPEP 715
G G GGP++ + P+ GGPMGS +P+ G G P P
Sbjct: 410 GGGGGGGGGPQSMSMPMGGAMGGPMGS--LPQMG--GGPGP 446
>At5g13020.1 68418.m01492 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 397
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +2
Query: 572 VRPSSYSGKRSGPLGGPRASA*PLVSPQGGPMGSQGIPRKGVLGAPEPPTVFRRFEAFSG 751
++PSS + +R GP GP+ P S Q G G P+ G L P ++ G
Sbjct: 168 MQPSSSALRRGGPPPGPKTKK-PKTSMQYPSTGIAGRPQAGAL--TNEPGESGSYDPLVG 224
Query: 752 GRFPILTKWP 781
+ + TKWP
Sbjct: 225 RK--VWTKWP 232
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Frame = +1
Query: 313 IKIEAAKSRKAP-STP-----TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
+ +E +RKAP +TP T +++G + E+ F +FGTV + RN
Sbjct: 38 LPLEGGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARN 94
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 233
+IF+ + +E+D R FE+YG + + + ++Y
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDY 126
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENNKSA 266
IF+G + TE DL+ +F ++G +V I + GFV N A
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACA 326
Score = 28.7 bits (61), Expect = 4.6
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +1
Query: 256 TSRP-RTIQNLNGELVHGQAIKIEAAKSRKAPSTPT-TKIFVGNLTDKTRAPEVRELFQK 429
+SRP RT N + + Q + + S PT T IFVG + +++ +F +
Sbjct: 241 SSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQ 300
Query: 430 FGTVVECDIV--RNYGFV 477
FG +V I + GFV
Sbjct: 301 FGELVHVKIPAGKRCGFV 318
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Frame = +1
Query: 355 PTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVH 480
PTT ++ GN+ + ++E+F G + C ++R +YGFVH
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVH 106
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKY--GTVVECDIVRN--YGFVHMENNKSAA 269
+++GNLS + T+ DL LF G + E + R+ +GFV + AA
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAA 324
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Frame = +1
Query: 355 PTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVH 480
PTT ++ GN+ + ++E+F G + C ++R +YGFVH
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVH 106
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKY--GTVVECDIVRN--YGFVHMENNKSAA 269
+++GNLS + T+ DL LF G + E + R+ +GFV + AA
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAA 320
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENNKSA 266
IFI NL L F +GT++ C + + YGFV E +SA
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESA 189
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = +1
Query: 268 RTIQNLNGELVHGQAIKIEAAKSRKAPSTPTT---KIFVGNLTDKTRAPEVRELFQKFGT 438
R ++ LN + + I+I S + PST + IF+ NL + E F FGT
Sbjct: 104 RAMEALNYTPLFDRPIRIML--SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGT 161
Query: 439 VVECDIVRNYGFVHLDATGRCE-RPFKEFERYDGS 540
++ C + +D TGR + F +FE+ + +
Sbjct: 162 ILSCKVA-------MDVTGRSKGYGFVQFEKEESA 189
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 364 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
K++VGNL T+ +R F KFGT+V ++ +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHD 246
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
K+++GNL T LR F K+GT+V ++ +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHD 246
>At5g19340.1 68418.m02305 expressed protein
Length = 263
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +3
Query: 150 SDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENNKSAANHSES*RRVSSWAGDQNRSG 329
S+K L+P E + +V GFVH + ++ N++ + SW D + S
Sbjct: 92 SEKLKNVTLKPKVEVQQEEEDHKVVNEEGFVHNKEQENNNNNNNNNNNRGSWFLDDDPSP 151
Query: 330 QEPEGAV 350
+ P+ V
Sbjct: 152 RPPKCTV 158
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGRCERPF 513
++K+FVG L+ T +++ F FG V E ++ R +GFV
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 514 KEFE 525
KE +
Sbjct: 94 KEMD 97
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGRCERPF 513
++K+FVG L+ T +++ F FG V E ++ R +GFV
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 514 KEFE 525
KE +
Sbjct: 94 KEMD 97
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 349 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG 471
++P++K+F+G L+ +++ F FG V E I + G
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKG 77
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKSAANHSE 281
K+F+G L+ T + + F KYG ++E I+ + YGFV ++ K+A E
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACE 76
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 352 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 459
T TK+FVG L T + + F K+G ++E I+
Sbjct: 14 TKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVII 49
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Frame = +3
Query: 111 AGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKS 263
+G ++ F+G L+ T + L F +YG V++ I+ R +GFV ++ K+
Sbjct: 3 SGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKA 61
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Frame = +3
Query: 111 AGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKS 263
+G ++ F+G L+ T + L F +YG V++ I+ R +GFV ++ K+
Sbjct: 3 SGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKA 61
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 322 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY 468
E SR S+ + + + NL R ++R+ F++FG + + + RNY
Sbjct: 34 ERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNY 82
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 274 IQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 441
I+ LN +HG+ I++ A K +F+GNL + + F FG +
Sbjct: 83 IKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENNKSAANHS 278
+F+G L T+ L+ +F +YG +V I + GFV + KS A +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQF-SEKSCAEEA 312
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Frame = +1
Query: 346 PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHL----DA 489
P+ TKI+V L TR + F++FG +V +V + +GFV A
Sbjct: 4 PNDRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESA 63
Query: 490 TGRCERP 510
T CE P
Sbjct: 64 TRACENP 70
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTV 206
K+++GNL +E LR +FE +G V
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPV 291
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 572 VRPSSYSGKR-SGPLGGPRASA*PLVSPQGGPMGSQGIPRKGVLGAP 709
V P S +G R +G P+ L S QGGP+G G+P L P
Sbjct: 104 VGPPSNTGIRGAGSDFPPKPGQATLPSNQGGPLGGYGVPPLNPLPVP 150
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Frame = +1
Query: 358 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGRCERPF 513
+ ++FV L+ T +R+LF FG + E ++R+ +GF+ D+ +
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 514 KEFE 525
K +
Sbjct: 66 KSLD 69
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 224
K+FI L+ TT LR LF YG + E ++
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVI 107
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 224
K+FI L+ TT LR LF YG + E ++
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVI 107
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Frame = +3
Query: 120 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENNKS 263
+T KIF+G L E +L+ F YG ++E I+ R +GFV + S
Sbjct: 155 KTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDS 210
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +1
Query: 319 IEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGF 474
++ S + S+P K+FVG ++ +T A F KFG VV+ I+ R +GF
Sbjct: 53 VDHRHSSSSMSSPG-KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGF 111
Query: 475 VHLDATGRCERPFKE 519
V + E+ +E
Sbjct: 112 VTFADSAVAEKVLEE 126
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 331 KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
++R+A S P++ +FV +D ++++F +FG V I+ N
Sbjct: 46 ETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIAN 92
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 331 KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 465
++R+A S P++ +FV +D ++++F +FG V I+ N
Sbjct: 65 ETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIAN 111
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLF 188
+++IGNL+ TTE D+R LF
Sbjct: 263 RVYIGNLAWDTTERDIRKLF 282
>At2g35350.1 68415.m04334 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2c
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 783
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -2
Query: 732 RRKTVGGSGAPRTP-FRGIPWEPMGPPCGLTSG*ALARGPPNGPDRLPEYELGRTN 568
RR V +G T F +P +P GL + RG +GP P E+ R+N
Sbjct: 137 RRSVVNANGFEGTSSFSALPLQPGPDRSGLFMSGPIERGATSGPLDPPAGEISRSN 192
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 355 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-RNYGFV 477
P+ + VGN++ E++ LF++FG + +N GF+
Sbjct: 215 PSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFI 256
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 132 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-RNYGFV 242
+ +GN+S + +L+ LFE++G + +N GF+
Sbjct: 219 LLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFI 256
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Frame = +1
Query: 274 IQNLNGELVHGQAIKIEAAKSRKAPS--------TPTTKIFVGNLTDKTRAPEVRELFQK 429
I + G +V G A+ + +K++ + + T TK+ V N+ + EVR+LF
Sbjct: 314 ILSFKGTVVDGHALILSFSKNKPSGTVGKDLDKDTILTKLHVKNIAFEATMKEVRQLFTP 373
Query: 430 FGTV 441
FG +
Sbjct: 374 FGQI 377
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
+IF+G L TE+ +R L E +G + D+V++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
+IF+G L TE+ +R L E +G + D+V++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 129 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 230
+IF+G L TE+ +R L E +G + D+V++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +1
Query: 277 QNLNGELVHGQAIKIEAAKSRKAPST--------PTTKIFVGNLTDKTRAPEVRELFQKF 432
++L G ++ G A+ + +++++ P TK+ V N+ + E+R+LF F
Sbjct: 633 RDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSPF 692
Query: 433 GTV 441
G +
Sbjct: 693 GQI 695
>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; weak hit to Pfam profile
PF02178: AT hook motif
Length = 1752
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +1
Query: 250 KTTSRPRTIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ 426
KT + T++ L H + AKS+ + KI + DK + PE+ E+ +
Sbjct: 773 KTVASMHTVEFQKRGLPHAHILLFMDAKSKLPTADDIDKIISAEIPDKDKEPELYEVIK 831
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Frame = +3
Query: 120 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMEN 254
R +++ NLS+ E LR +F YG +V ++ + +GFV N
Sbjct: 302 RWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSN 353
>At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 236
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 55 FNLCYILLFFVHSNP*SKM 111
F LCYI+LF +H++ +KM
Sbjct: 88 FQLCYIILFIMHTDKKNKM 106
>At1g78650.1 68414.m09166 expressed protein weak similarity to DNA
polymerase delta subunit 3 (DNA polymerase delta subunit
p66) (Swiss-Prot:Q15054) [Homo sapiens]
Length = 509
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/71 (30%), Positives = 30/71 (42%)
Frame = -3
Query: 614 PMARTACRNTNSVGQTATFQWGWSVEPSYRSNSLKGRSHRPVASKCTKP*LRTISHSTTV 435
PM A NT V F+ +PS N LKG V++ C K + + + T
Sbjct: 105 PMDPAAIWNTEFVQAEELFR-----QPSATDNCLKGNRFCGVSNSCVKRNIEGATENVTA 159
Query: 434 PNF*NSSRTSG 402
P S RT+G
Sbjct: 160 PRT-ESVRTTG 169
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,056,881
Number of Sequences: 28952
Number of extensions: 428883
Number of successful extensions: 1664
Number of sequences better than 10.0: 152
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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