Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30515
(822 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III; n=... 144 2e-33
UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=3... 142 7e-33
UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, wh... 98 2e-19
UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;... 98 2e-19
UniRef50_A5BNE7 Cluster: Putative uncharacterized protein; n=1; ... 98 3e-19
UniRef50_Q4T4A9 Cluster: Chromosome undetermined SCAF9757, whole... 95 2e-18
UniRef50_A5BYF4 Cluster: Putative uncharacterized protein; n=1; ... 91 2e-17
UniRef50_A2AAP7 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide ... 91 3e-17
UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome s... 90 7e-17
UniRef50_Q0E2Q3 Cluster: Putative eukaryotic initiation factor 4... 89 9e-17
UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4; D... 89 2e-16
UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 88 2e-16
UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2; Planct... 87 4e-16
UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein; ... 87 4e-16
UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11; Cyano... 85 2e-15
UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12; Clost... 84 5e-15
UniRef50_A0BEU9 Cluster: Chromosome undetermined scaffold_102, w... 83 6e-15
UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH f... 83 8e-15
UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole... 83 1e-14
UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=... 82 2e-14
UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 82 2e-14
UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 81 3e-14
UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1; Mycopl... 81 4e-14
UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia psych... 81 4e-14
UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1; Flavob... 81 4e-14
UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine... 81 4e-14
UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n... 80 6e-14
UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3; Deltap... 80 6e-14
UniRef50_Q23U16 Cluster: DEAD/DEAH box helicase family protein; ... 80 8e-14
UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35; ... 79 2e-13
UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=... 79 2e-13
UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 78 2e-13
UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1; Mesopl... 78 3e-13
UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15; Cyan... 78 3e-13
UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein; ... 78 3e-13
UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4; Legion... 77 4e-13
UniRef50_UPI000065E01D Cluster: Homolog of Brachydanio rerio "Eu... 77 5e-13
UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=... 77 7e-13
UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A fami... 76 9e-13
UniRef50_Q9S531 Cluster: DEAD-box protein; n=4; Cystobacterineae... 76 1e-12
UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytoph... 76 1e-12
UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellu... 75 2e-12
UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=... 75 2e-12
UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;... 75 2e-12
UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54; Ga... 75 2e-12
UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein; ... 75 3e-12
UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 75 3e-12
UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4; Clostr... 74 4e-12
UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 74 4e-12
UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box fa... 74 4e-12
UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4; ... 74 4e-12
UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20; Franc... 73 7e-12
UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=... 73 9e-12
UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase, DE... 73 1e-11
UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 73 1e-11
UniRef50_A2EPG4 Cluster: DEAD/DEAH box helicase family protein; ... 72 2e-11
UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular organ... 72 2e-11
UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;... 72 2e-11
UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6; H... 72 2e-11
UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3; Altero... 72 2e-11
UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2; Trepon... 72 2e-11
UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1; Blasto... 72 2e-11
UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4; ... 72 2e-11
UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellul... 71 3e-11
UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1; Syntro... 71 3e-11
UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein; ... 71 3e-11
UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=... 71 4e-11
UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=... 71 4e-11
UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein; ... 71 4e-11
UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein; ... 71 4e-11
UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein; ... 71 4e-11
UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=... 71 5e-11
UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein; ... 71 5e-11
UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2; ... 71 5e-11
UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific fo... 71 5e-11
UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase, C-term... 70 6e-11
UniRef50_P75172 Cluster: Probable ATP-dependent RNA helicase MG4... 70 6e-11
UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5; T... 70 8e-11
UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=... 70 8e-11
UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1; Oceano... 70 8e-11
UniRef50_Q188H5 Cluster: Putative ATP-dependent RNA helicase; n=... 70 8e-11
UniRef50_Q0G0P8 Cluster: Superfamily II DNA and RNA helicase; n=... 70 8e-11
UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5; Viridiplanta... 70 8e-11
UniRef50_Q8MZI3 Cluster: GH10652p; n=2; Drosophila melanogaster|... 70 8e-11
UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma ... 70 8e-11
UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog; ... 70 8e-11
UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX... 70 8e-11
UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family pr... 69 1e-10
UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;... 69 1e-10
UniRef50_Q89IS2 Cluster: Cold-shock dead-box protein A; n=28; Al... 69 1e-10
UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 69 1e-10
UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10; Proteobac... 69 1e-10
UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1; A... 69 1e-10
UniRef50_A6TX49 Cluster: DEAD/DEAH box helicase domain protein; ... 69 1e-10
UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6; Bacter... 69 1e-10
UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=... 69 1e-10
UniRef50_A0VLH7 Cluster: DEAD/DEAH box helicase domain protein; ... 69 1e-10
UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein; ... 69 1e-10
UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3; Methanosarc... 69 1e-10
UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2; Synec... 69 1e-10
UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein; ... 69 1e-10
UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6; ... 69 1e-10
UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX... 69 1e-10
UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1; Ent... 69 2e-10
UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE; ... 69 2e-10
UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=... 69 2e-10
UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein; ... 69 2e-10
UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 69 2e-10
UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1; ... 69 2e-10
UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhl... 69 2e-10
UniRef50_UPI0000DAE40A Cluster: hypothetical protein Rgryl_01000... 68 2e-10
UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6; Xantho... 68 2e-10
UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicas... 68 2e-10
UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3; Clostr... 68 2e-10
UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=... 68 2e-10
UniRef50_Q0C4R1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 68 2e-10
UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1; uncult... 68 2e-10
UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n... 68 3e-10
UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box fa... 68 3e-10
UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14; ... 68 3e-10
UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL p... 68 3e-10
UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein; ... 68 3e-10
UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein; ... 68 3e-10
UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n... 68 3e-10
UniRef50_Q17JB5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 68 3e-10
UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein; ... 68 3e-10
UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1; E... 68 3e-10
UniRef50_UPI0000499D6F Cluster: DEAD/DEAH box helicase; n=1; Ent... 67 4e-10
UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18; ... 67 4e-10
UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA h... 67 4e-10
UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein; ... 67 4e-10
UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3; P... 67 4e-10
UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2; Alphaproteob... 67 4e-10
UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein; ... 67 4e-10
UniRef50_Q3LWE1 Cluster: Translation initiation factor 4A2; n=1;... 67 4e-10
UniRef50_A4V6K5 Cluster: DEAD box polypeptide 19 protein; n=3; P... 67 4e-10
UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=19... 67 4e-10
UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable A... 67 6e-10
UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box fa... 67 6e-10
UniRef50_A5G1U8 Cluster: DEAD/DEAH box helicase domain protein; ... 67 6e-10
UniRef50_A1IIT5 Cluster: RNA helicase; n=1; Neobenedenia girella... 67 6e-10
UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1; ... 67 6e-10
UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable A... 66 8e-10
UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=... 66 8e-10
UniRef50_Q0TQ86 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 66 8e-10
UniRef50_Q4P7Y2 Cluster: Putative uncharacterized protein; n=1; ... 66 8e-10
UniRef50_A5E058 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 66 8e-10
UniRef50_Q6BML1 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 66 8e-10
UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n... 66 1e-09
UniRef50_Q1IMK6 Cluster: DEAD/DEAH box helicase-like; n=1; Acido... 66 1e-09
UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1; Pseud... 66 1e-09
UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2; s... 66 1e-09
UniRef50_Q4Q1P0 Cluster: DEAD box RNA helicase, putative; n=5; T... 66 1e-09
UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;... 66 1e-09
UniRef50_UPI00006CBDDC Cluster: DEAD/DEAH box helicase family pr... 66 1e-09
UniRef50_Q81RE0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 66 1e-09
UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28; Alphaproteo... 66 1e-09
UniRef50_Q5FNK0 Cluster: ATP-dependent RNA helicase; n=1; Glucon... 66 1e-09
UniRef50_Q18W60 Cluster: DEAD/DEAH box helicase-like; n=2; Desul... 66 1e-09
UniRef50_Q0BUS0 Cluster: ATP-dependent RNA helicase; n=3; Rhodos... 66 1e-09
UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box heli... 66 1e-09
UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellu... 66 1e-09
UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1; ... 66 1e-09
UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA hel... 66 1e-09
UniRef50_Q6MQY6 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 65 2e-09
UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59; ... 65 2e-09
UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein; ... 65 2e-09
UniRef50_Q087U7 Cluster: DEAD/DEAH box helicase domain protein; ... 65 2e-09
UniRef50_A7CUH7 Cluster: DEAD/DEAH box helicase domain protein; ... 65 2e-09
UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1; Planct... 65 2e-09
UniRef50_A4C6L9 Cluster: ATP-dependent RNA helicase, DEAD box fa... 65 2e-09
UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase Rhl... 65 2e-09
UniRef50_Q9LUW5 Cluster: DEAD-box ATP-dependent RNA helicase 53;... 65 2e-09
UniRef50_Q8L4E9 Cluster: DEAD-box ATP-dependent RNA helicase 36;... 65 2e-09
UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=... 65 2e-09
UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase pro... 65 2e-09
UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein; ... 65 2e-09
UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH bo... 65 2e-09
UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila melanogaster... 65 2e-09
UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog; ... 65 2e-09
UniRef50_Q5KBP5 Cluster: ATP-dependent RNA helicase DBP5; n=3; F... 65 2e-09
UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box fa... 64 3e-09
UniRef50_A4B385 Cluster: ATP-dependent RNA helicase, DEAD box fa... 64 3e-09
UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3; Thermopro... 64 3e-09
UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=... 64 4e-09
UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1; ... 64 4e-09
UniRef50_A3ZXX1 Cluster: ATP-dependent RNA helicase; n=2; Planct... 64 4e-09
UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1; Clost... 64 4e-09
UniRef50_A0KZD5 Cluster: DEAD/DEAH box helicase domain protein; ... 64 4e-09
UniRef50_Q5BXU1 Cluster: SJCHGC08663 protein; n=1; Schistosoma j... 64 4e-09
UniRef50_Q22308 Cluster: Putative uncharacterized protein; n=7; ... 64 4e-09
UniRef50_P20447 Cluster: ATP-dependent RNA helicase DBP3; n=20; ... 64 4e-09
UniRef50_Q2S6I0 Cluster: ATP-dependent RNA helicase; n=1; Salini... 64 5e-09
UniRef50_Q12B10 Cluster: DEAD/DEAH box helicase-like; n=13; Prot... 64 5e-09
UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=... 64 5e-09
UniRef50_Q0AR94 Cluster: DEAD/DEAH box helicase domain protein; ... 64 5e-09
UniRef50_Q2LZJ8 Cluster: GA19670-PA; n=1; Drosophila pseudoobscu... 64 5e-09
UniRef50_Q55RL6 Cluster: Putative uncharacterized protein; n=2; ... 64 5e-09
UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3; Thermo... 64 5e-09
UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellu... 63 7e-09
UniRef50_Q1GJ43 Cluster: DEAD/DEAH box helicase-like protein; n=... 63 7e-09
UniRef50_O07897 Cluster: Heat resistant RNA dependent ATPase; n=... 63 7e-09
UniRef50_A6PQ62 Cluster: DEAD/DEAH box helicase domain protein; ... 63 7e-09
UniRef50_A3J7I3 Cluster: ATP-independent RNA helicase; n=5; Bact... 63 7e-09
UniRef50_A3I404 Cluster: Putative uncharacterized protein; n=1; ... 63 7e-09
UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=... 63 7e-09
UniRef50_A5KB15 Cluster: ATP-dependent RNA helicase, putative; n... 63 7e-09
UniRef50_Q1E273 Cluster: Putative uncharacterized protein; n=2; ... 63 7e-09
UniRef50_P93008 Cluster: DEAD-box ATP-dependent RNA helicase 21;... 63 7e-09
UniRef50_Q9NR30 Cluster: Nucleolar RNA helicase 2; n=51; Euteleo... 63 7e-09
UniRef50_Q9KKW0 Cluster: ATP-dependent RNA helicase, DEAD box fa... 63 9e-09
UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2; Glucon... 63 9e-09
UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box RN... 63 9e-09
UniRef50_A0M3C7 Cluster: RhlE-like DEAD box family ATP-dependent... 63 9e-09
UniRef50_Q019E9 Cluster: ATP-dependent RNA helicase; n=2; Ostreo... 63 9e-09
UniRef50_Q53FI9 Cluster: Nucleolar protein GU2 variant; n=3; Eut... 63 9e-09
UniRef50_Q8EJQ5 Cluster: ATP-dependent RNA helicase rhlB; n=62; ... 63 9e-09
UniRef50_Q9HXE5 Cluster: ATP-dependent RNA helicase rhlB; n=22; ... 63 9e-09
UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;... 63 9e-09
UniRef50_Q5KME7 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 63 9e-09
UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase MJ0... 63 9e-09
UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 62 1e-08
UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6; Prot... 62 1e-08
UniRef50_A1VA48 Cluster: DEAD/DEAH box helicase domain protein; ... 62 1e-08
UniRef50_Q7QQX6 Cluster: GLP_383_7421_6129; n=1; Giardia lamblia... 62 1e-08
UniRef50_Q688Z4 Cluster: Putative uncharacterized protein; n=3; ... 62 1e-08
UniRef50_A4QQK0 Cluster: Putative uncharacterized protein; n=3; ... 62 1e-08
UniRef50_Q9BUQ8 Cluster: Probable ATP-dependent RNA helicase DDX... 62 1e-08
UniRef50_P20448 Cluster: ATP-dependent RNA helicase DBP4; n=13; ... 62 1e-08
UniRef50_Q03YT1 Cluster: Superfamily II DNA and RNA helicase; n=... 62 2e-08
UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1; ... 62 2e-08
UniRef50_A4RYJ1 Cluster: Predicted protein; n=3; Ostreococcus|Re... 62 2e-08
UniRef50_Q7QNT5 Cluster: GLP_88_2286_3572; n=1; Giardia lamblia ... 62 2e-08
UniRef50_A4RHM4 Cluster: Putative uncharacterized protein; n=1; ... 62 2e-08
UniRef50_Q6CZD9 Cluster: ATP-dependent RNA helicase rhlB; n=2; G... 62 2e-08
UniRef50_UPI0000E48294 Cluster: PREDICTED: similar to DEAD (Asp-... 62 2e-08
UniRef50_Q88NB7 Cluster: ATP-dependent RNA helicase rhlB; n=18; ... 62 2e-08
UniRef50_O49289 Cluster: Putative DEAD-box ATP-dependent RNA hel... 62 2e-08
UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 61 3e-08
UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 61 3e-08
UniRef50_A3PFY9 Cluster: DEAD/DEAH box helicase domain protein; ... 61 3e-08
UniRef50_Q8I416 Cluster: ATP-dependent RNA helicase, putative; n... 61 3e-08
UniRef50_Q54Y81 Cluster: Putative RNA helicase; n=2; Dictyosteli... 61 3e-08
UniRef50_Q22MC1 Cluster: Type III restriction enzyme, res subuni... 61 3e-08
UniRef50_A0T1H5 Cluster: SF2-family helicase; n=6; Plasmodium|Re... 61 3e-08
UniRef50_P54475 Cluster: Probable ATP-dependent RNA helicase yqf... 61 3e-08
UniRef50_Q8L7S8 Cluster: DEAD-box ATP-dependent RNA helicase 3; ... 61 3e-08
UniRef50_A4RIF1 Cluster: ATP-dependent RNA helicase DBP5; n=7; A... 61 3e-08
UniRef50_Q8YH70 Cluster: ATP-DEPENDENT RNA HELICASE RHLE; n=10; ... 61 4e-08
UniRef50_Q6A6U7 Cluster: ATP-dependent RNA helicase; n=3; Actino... 61 4e-08
UniRef50_Q4PNH7 Cluster: Putative cold-shock dead-box protein A;... 61 4e-08
UniRef50_Q41F45 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 61 4e-08
UniRef50_Q4N9Q9 Cluster: DEAD box RNA helicase, putative; n=3; P... 61 4e-08
UniRef50_Q17II7 Cluster: DEAD box ATP-dependent RNA helicase; n=... 61 4e-08
UniRef50_Q9M2F9 Cluster: DEAD-box ATP-dependent RNA helicase 52;... 61 4e-08
UniRef50_UPI00015B5D7B Cluster: PREDICTED: similar to LD28101p; ... 60 7e-08
UniRef50_UPI00005A557C Cluster: PREDICTED: similar to eukaryotic... 60 7e-08
UniRef50_Q81LV0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 60 7e-08
UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DE... 60 7e-08
UniRef50_Q95QN2 Cluster: Putative uncharacterized protein; n=2; ... 60 7e-08
UniRef50_Q16XX4 Cluster: DEAD box ATP-dependent RNA helicase; n=... 60 7e-08
UniRef50_A4UCU0 Cluster: DEAD box polypeptide 47 isoform 1 varia... 60 7e-08
UniRef50_Q9H0S4 Cluster: Probable ATP-dependent RNA helicase DDX... 60 7e-08
UniRef50_Q4SJI2 Cluster: Chromosome 4 SCAF14575, whole genome sh... 60 9e-08
UniRef50_Q9RKJ0 Cluster: ATP-dependent RNA helicase; n=2; Strept... 60 9e-08
UniRef50_Q6APU7 Cluster: Related to ATP-dependent RNA helicase; ... 60 9e-08
UniRef50_Q5QWG1 Cluster: ATP-dependent RNA helicase; n=1; Idioma... 60 9e-08
UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellu... 60 9e-08
UniRef50_A6DL95 Cluster: Probable ATP-dependent RNA helicase; n=... 60 9e-08
UniRef50_A3WBM2 Cluster: Cold-shock dead-box protein A; n=1; Ery... 60 9e-08
UniRef50_Q7QP86 Cluster: GLP_397_1016_18; n=1; Giardia lamblia A... 60 9e-08
UniRef50_Q5CIF9 Cluster: DEAD-box RNA helicase; n=2; Cryptospori... 60 9e-08
UniRef50_Q54TF8 Cluster: DEAD-box RNA helicase; n=2; Dictyosteli... 60 9e-08
UniRef50_Q17KA8 Cluster: DEAD box ATP-dependent RNA helicase; n=... 60 9e-08
UniRef50_A2DFG9 Cluster: DEAD/DEAH box helicase family protein; ... 60 9e-08
UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1; Metha... 60 9e-08
UniRef50_Q4WRP2 Cluster: ATP-dependent RNA helicase mss116, mito... 60 9e-08
UniRef50_Q6A841 Cluster: Putative ATP-dependent RNA helicase; n=... 59 1e-07
UniRef50_Q0BSI7 Cluster: ATP-dependent RNA helicase; n=12; Alpha... 59 1e-07
UniRef50_A2DH37 Cluster: DEAD/DEAH box helicase family protein; ... 59 1e-07
UniRef50_Q13838 Cluster: Spliceosome RNA helicase BAT1; n=55; Eu... 59 1e-07
UniRef50_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28;... 59 1e-07
UniRef50_Q09719 Cluster: ATP-dependent RNA helicase dbp10; n=2; ... 59 1e-07
UniRef50_UPI0000F1F65D Cluster: PREDICTED: hypothetical protein;... 59 2e-07
UniRef50_UPI0000DB7667 Cluster: PREDICTED: similar to CG32344-PA... 59 2e-07
UniRef50_Q9K7L3 Cluster: RNA helicase; n=2; Bacillus|Rep: RNA he... 59 2e-07
UniRef50_Q8F0Q7 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 59 2e-07
UniRef50_Q88XN5 Cluster: ATP-dependent RNA helicase; n=2; Lactob... 59 2e-07
UniRef50_Q7VQL9 Cluster: Cold-shock DEAD-box protein A, inducibl... 59 2e-07
UniRef50_Q8SY39 Cluster: LD28101p; n=3; Diptera|Rep: LD28101p - ... 59 2e-07
UniRef50_Q58HG3 Cluster: DEAD-box RNA helicase; n=4; Eukaryota|R... 59 2e-07
UniRef50_Q54TJ4 Cluster: Putative uncharacterized protein; n=1; ... 59 2e-07
UniRef50_Q17BP5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 59 2e-07
UniRef50_A2DB16 Cluster: DEAD/DEAH box helicase family protein; ... 59 2e-07
UniRef50_A0CZH3 Cluster: Chromosome undetermined scaffold_32, wh... 59 2e-07
UniRef50_Q9LYJ9 Cluster: DEAD-box ATP-dependent RNA helicase 46;... 59 2e-07
UniRef50_Q8H0U8 Cluster: DEAD-box ATP-dependent RNA helicase 42;... 59 2e-07
UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9; F... 59 2e-07
UniRef50_Q7RYZ7 Cluster: ATP-dependent RNA helicase dbp-8; n=15;... 59 2e-07
UniRef50_Q7MT81 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 58 2e-07
UniRef50_Q30SZ2 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 58 2e-07
UniRef50_Q9GV13 Cluster: Vasa-related protein CnVAS1; n=3; Eumet... 58 2e-07
UniRef50_Q5D9C4 Cluster: SJCHGC09528 protein; n=1; Schistosoma j... 58 2e-07
UniRef50_A0BPV0 Cluster: Chromosome undetermined scaffold_12, wh... 58 2e-07
UniRef50_Q27268 Cluster: ATP-dependent RNA helicase WM6; n=82; E... 58 2e-07
UniRef50_Q3EBD3 Cluster: DEAD-box ATP-dependent RNA helicase 41;... 58 2e-07
UniRef50_Q10RI7 Cluster: DEAD-box ATP-dependent RNA helicase 38;... 58 2e-07
UniRef50_Q6BLU9 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 58 2e-07
UniRef50_Q5KNF8 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 58 2e-07
UniRef50_Q4PEX7 Cluster: ATP-dependent RNA helicase DBP8; n=1; U... 58 2e-07
UniRef50_P20449 Cluster: ATP-dependent RNA helicase DBP5; n=23; ... 58 2e-07
UniRef50_UPI0000F2BC8C Cluster: PREDICTED: similar to eukaryotic... 58 3e-07
UniRef50_Q5GRS8 Cluster: Superfamily II DNA/RNA helicase; n=4; W... 58 3e-07
UniRef50_Q31EF0 Cluster: ATP-dependent RNA helicase; n=1; Thiomi... 58 3e-07
UniRef50_Q1LSH5 Cluster: DEAD/DEAH box helicase-like protein pre... 58 3e-07
UniRef50_A6W6A7 Cluster: DEAD/DEAH box helicase domain protein; ... 58 3e-07
UniRef50_A6QC93 Cluster: ATP-independent RNA helicase DbpA; n=1;... 58 3e-07
UniRef50_Q5CX71 Cluster: Hca4p helicase DBP4 (Helicase CA4). EIF... 58 3e-07
UniRef50_Q4Q2Z6 Cluster: ATP-dependent RNA helicase, putative; n... 58 3e-07
UniRef50_A0CUN8 Cluster: Chromosome undetermined scaffold_28, wh... 58 3e-07
UniRef50_Q8TDD1 Cluster: ATP-dependent RNA helicase DDX54; n=45;... 58 3e-07
UniRef50_Q8SRB2 Cluster: ATP-dependent RNA helicase DBP2; n=103;... 58 3e-07
UniRef50_Q9VHP0 Cluster: ATP-dependent RNA helicase bel; n=4; Pr... 58 3e-07
UniRef50_UPI00004988F8 Cluster: DEAD/DEAH box helicase; n=1; Ent... 58 4e-07
UniRef50_Q28T45 Cluster: DEAD/DEAH box helicase-like protein; n=... 58 4e-07
UniRef50_Q0LVA0 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 58 4e-07
UniRef50_A6VWX2 Cluster: DEAD/DEAH box helicase domain protein; ... 58 4e-07
UniRef50_A3JG19 Cluster: ATP-dependent RNA helicase; n=1; Marino... 58 4e-07
UniRef50_Q4Z5Q6 Cluster: ATP-dependent RNA helicase, putative; n... 58 4e-07
UniRef50_Q4Y0X7 Cluster: DEAD-box RNA helicase, putative; n=2; P... 58 4e-07
UniRef50_Q4QJG6 Cluster: ATP-dependent RNA helicase, putative; n... 58 4e-07
UniRef50_Q4Q1N9 Cluster: DEAD box RNA helicase, putative; n=5; T... 58 4e-07
UniRef50_A4V6M8 Cluster: Nucleolar RNA helicase II/Gu protein; n... 58 4e-07
UniRef50_Q9PA24 Cluster: ATP-dependent RNA helicase rhlB; n=87; ... 58 4e-07
UniRef50_Q9SQV1 Cluster: Probable DEAD-box ATP-dependent RNA hel... 58 4e-07
UniRef50_Q5KPU1 Cluster: ATP-dependent RNA helicase DBP8; n=2; F... 58 4e-07
UniRef50_Q30P62 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 57 5e-07
UniRef50_A6DML6 Cluster: ATP-dependent RNA helicase; n=1; Lentis... 57 5e-07
UniRef50_A1G315 Cluster: DEAD/DEAH box helicase-like; n=2; Salin... 57 5e-07
UniRef50_A0KXT6 Cluster: DEAD/DEAH box helicase domain protein; ... 57 5e-07
UniRef50_A0JYP4 Cluster: DEAD/DEAH box helicase domain protein; ... 57 5e-07
UniRef50_Q8I0W7 Cluster: Snrnp protein, putative; n=6; Plasmodiu... 57 5e-07
UniRef50_A2DES1 Cluster: DEAD/DEAH box helicase family protein; ... 57 5e-07
UniRef50_A7ETZ1 Cluster: Putative uncharacterized protein; n=1; ... 57 5e-07
UniRef50_Q5N7W4 Cluster: DEAD-box ATP-dependent RNA helicase 30;... 57 5e-07
UniRef50_Q6FML5 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 57 5e-07
UniRef50_Q9Y6V7 Cluster: Probable ATP-dependent RNA helicase DDX... 57 5e-07
UniRef50_UPI00006CDDA3 Cluster: CLN3 protein; n=1; Tetrahymena t... 57 6e-07
UniRef50_Q11U28 Cluster: ATP-dependent RNA helicase protein; n=4... 57 6e-07
UniRef50_A6DHU9 Cluster: DEAD/DEAH box helicase-like protein; n=... 57 6e-07
UniRef50_A4BHZ9 Cluster: ATP-dependent RNA helicase; n=1; Reinek... 57 6e-07
UniRef50_A3AD37 Cluster: Putative uncharacterized protein; n=2; ... 57 6e-07
UniRef50_A2DGJ7 Cluster: DEAD/DEAH box helicase family protein; ... 57 6e-07
UniRef50_Q8SR49 Cluster: ATP-dependent rRNA helicase SPB4; n=1; ... 57 6e-07
UniRef50_O00148 Cluster: ATP-dependent RNA helicase DDX39; n=27;... 57 6e-07
UniRef50_UPI000155CE2F Cluster: PREDICTED: similar to R27090_2; ... 56 8e-07
UniRef50_UPI0001555979 Cluster: PREDICTED: similar to ATP-depend... 56 8e-07
UniRef50_Q1VPX9 Cluster: ATP-independent RNA helicase; n=9; Bact... 56 8e-07
UniRef50_Q11WD3 Cluster: Possible ATP-dependent RNA helicase; n=... 56 8e-07
UniRef50_A0UX17 Cluster: DEAD/DEAH box helicase-like; n=5; Clost... 56 8e-07
UniRef50_Q9VXW2 Cluster: CG6227-PA; n=11; Coelomata|Rep: CG6227-... 56 8e-07
UniRef50_Q965K2 Cluster: Putative uncharacterized protein; n=2; ... 56 8e-07
UniRef50_Q7QTB2 Cluster: GLP_15_13424_14974; n=2; Giardia intest... 56 8e-07
UniRef50_Q7QQ49 Cluster: GLP_139_12217_14094; n=1; Giardia lambl... 56 8e-07
UniRef50_Q61AN8 Cluster: Putative uncharacterized protein CBG136... 56 8e-07
UniRef50_Q4UA43 Cluster: DEAD-family helicase, putative; n=3; Pi... 56 8e-07
UniRef50_Q388E8 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 56 8e-07
UniRef50_A6N5Z1 Cluster: Helicase; n=7; Plasmodium|Rep: Helicase... 56 8e-07
UniRef50_A3QMD4 Cluster: Putative uncharacterized protein mel-46... 56 8e-07
UniRef50_P21372 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 56 8e-07
UniRef50_UPI00015B61D8 Cluster: PREDICTED: similar to vasa-like ... 56 1e-06
UniRef50_UPI00004987FF Cluster: DEAD/DEAH box helicase; n=5; Ent... 56 1e-06
UniRef50_Q92AT6 Cluster: Lin1833 protein; n=13; Listeria|Rep: Li... 56 1e-06
UniRef50_Q2Z064 Cluster: Probable ATP-dependent RNA helicase; n=... 56 1e-06
UniRef50_Q2BGG8 Cluster: RNA helicase DbpA; n=1; Neptuniibacter ... 56 1e-06
UniRef50_A0LD66 Cluster: DEAD/DEAH box helicase domain protein; ... 56 1e-06
UniRef50_Q4UBP8 Cluster: RNA helicase, putative; n=4; Eukaryota|... 56 1e-06
UniRef50_A6GPV2 Cluster: Helicase; n=1; Limnobacter sp. MED105|R... 56 1e-06
UniRef50_A6G4U7 Cluster: DEAD/DEAH box helicase; n=2; Plesiocyst... 56 1e-06
UniRef50_A3EUK2 Cluster: Superfamily II DNA and RNA helicase; n=... 56 1e-06
UniRef50_A0LLL9 Cluster: DEAD/DEAH box helicase domain protein; ... 56 1e-06
UniRef50_A7NWH7 Cluster: Chromosome chr5 scaffold_2, whole genom... 56 1e-06
UniRef50_Q869K2 Cluster: Similar to Dictyostelium discoideum (Sl... 56 1e-06
UniRef50_Q5CHB7 Cluster: Putative uncharacterized protein; n=2; ... 56 1e-06
UniRef50_Q4N215 Cluster: RNA helicase, putative; n=3; Aconoidasi... 56 1e-06
UniRef50_A7RY08 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 56 1e-06
UniRef50_A7AWZ5 Cluster: DEAD/DEAH box helicase and helicase con... 56 1e-06
UniRef50_A0CUL6 Cluster: Chromosome undetermined scaffold_28, wh... 56 1e-06
UniRef50_Q8IV96 Cluster: DDX6 protein; n=8; Eukaryota|Rep: DDX6 ... 56 1e-06
UniRef50_Q9SF41 Cluster: DEAD-box ATP-dependent RNA helicase 45;... 56 1e-06
UniRef50_Q93ZG7 Cluster: DEAD-box ATP-dependent RNA helicase 38;... 56 1e-06
UniRef50_A4RK80 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 56 1e-06
UniRef50_UPI0000D5571E Cluster: PREDICTED: similar to CG5800-PA;... 55 2e-06
UniRef50_UPI00003C8469 Cluster: hypothetical protein Faci_030017... 55 2e-06
UniRef50_Q4S1T3 Cluster: Chromosome undetermined SCAF14764, whol... 55 2e-06
UniRef50_Q835K0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 55 2e-06
UniRef50_Q5NN72 Cluster: DNA and RNA helicase; n=3; Sphingomonad... 55 2e-06
UniRef50_Q2BIX8 Cluster: Probable ATP-dependent RNA helicase; n=... 55 2e-06
UniRef50_A1FEC3 Cluster: DEAD/DEAH box helicase-like; n=21; Gamm... 55 2e-06
UniRef50_Q4QIG1 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 55 2e-06
UniRef50_Q22T03 Cluster: DEAD/DEAH box helicase family protein; ... 55 2e-06
UniRef50_A7S2R2 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 55 2e-06
UniRef50_A5K9H3 Cluster: Pre-mRNA splicing factor RNA helicase P... 55 2e-06
UniRef50_Q59H21 Cluster: ATP-dependent RNA helicase ROK1 isoform... 55 2e-06
UniRef50_A7TJK8 Cluster: Putative uncharacterized protein; n=1; ... 55 2e-06
UniRef50_A7ECJ8 Cluster: Putative uncharacterized protein; n=1; ... 55 2e-06
UniRef50_A6SDG8 Cluster: Putative uncharacterized protein; n=1; ... 55 2e-06
UniRef50_Q4IBS2 Cluster: ATP-dependent RNA helicase MAK5; n=2; S... 55 2e-06
UniRef50_Q9Y2R4 Cluster: Probable ATP-dependent RNA helicase DDX... 55 2e-06
UniRef50_Q9DF36 Cluster: RNA helicase II/Gu; n=9; Tetrapoda|Rep:... 55 2e-06
UniRef50_Q32LU9 Cluster: LOC562123 protein; n=3; Danio rerio|Rep... 55 2e-06
UniRef50_Q1Q4V2 Cluster: Similar to ATP-independent RNA helicase... 55 2e-06
UniRef50_A5EYB1 Cluster: ATP-dependent rna helicase Rhl; n=2; Ga... 55 2e-06
UniRef50_Q014T4 Cluster: Chromosome 07 contig 1, DNA sequence; n... 55 2e-06
UniRef50_Q389T9 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 55 2e-06
UniRef50_A7AWS5 Cluster: DEAD/DEAH box helicase and helicase con... 55 2e-06
UniRef50_A2EVI2 Cluster: DEAD/DEAH box helicase family protein; ... 55 2e-06
UniRef50_Q754U8 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 55 2e-06
UniRef50_Q9Y7T7 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 55 2e-06
UniRef50_P0C2N8 Cluster: ATP-dependent RNA helicase drs-1; n=16;... 55 2e-06
UniRef50_Q5T1V6 Cluster: Probable ATP-dependent RNA helicase DDX... 55 2e-06
UniRef50_Q9UTP9 Cluster: ATP-dependent RNA helicase dbp4; n=1; S... 55 2e-06
UniRef50_Q0UMB6 Cluster: ATP-dependent RNA helicase DBP10; n=1; ... 55 2e-06
UniRef50_Q5BFU7 Cluster: ATP-dependent RNA helicase dbp10; n=14;... 55 2e-06
UniRef50_Q2H0R2 Cluster: ATP-dependent RNA helicase DBP10; n=1; ... 55 2e-06
UniRef50_UPI0000E23613 Cluster: PREDICTED: similar to eukaryotic... 54 3e-06
UniRef50_UPI00004994C0 Cluster: DEAD/DEAH box helicase; n=2; Ent... 54 3e-06
UniRef50_UPI0000498D8E Cluster: ATP-dependent RNA helicase; n=1;... 54 3e-06
UniRef50_Q0M1B5 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 54 3e-06
UniRef50_A5FH33 Cluster: DEAD/DEAH box helicase domain protein; ... 54 3e-06
UniRef50_Q9SEV5 Cluster: RNA helicase; n=1; Guillardia theta|Rep... 54 3e-06
UniRef50_Q011U7 Cluster: Myc-regulated DEAD/H box 18 RNA helicas... 54 3e-06
UniRef50_Q4QC38 Cluster: RNA helicase, putative; n=7; Trypanosom... 54 3e-06
UniRef50_Q16W98 Cluster: DEAD box ATP-dependent RNA helicase; n=... 54 3e-06
UniRef50_Q16JA8 Cluster: DEAD box ATP-dependent RNA helicase; n=... 54 3e-06
UniRef50_A7U5W7 Cluster: DEAD-box helicase 2; n=6; Plasmodium|Re... 54 3e-06
UniRef50_A2EAD4 Cluster: DEAD/DEAH box helicase family protein; ... 54 3e-06
UniRef50_A3BT52 Cluster: DEAD-box ATP-dependent RNA helicase 29;... 54 3e-06
UniRef50_Q4IP34 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 54 3e-06
UniRef50_Q0U6X2 Cluster: ATP-dependent RNA helicase MAK5; n=2; P... 54 3e-06
UniRef50_P38719 Cluster: ATP-dependent RNA helicase DBP8; n=14; ... 54 3e-06
UniRef50_UPI00015609AE Cluster: PREDICTED: similar to DEAD (Asp-... 54 4e-06
UniRef50_UPI00015A4B44 Cluster: DEAD (Asp-Glu-Ala-Asp) box polyp... 54 4e-06
UniRef50_Q5VQL1-2 Cluster: Isoform 2 of Q5VQL1 ; n=2; Magnolioph... 54 4e-06
UniRef50_Q8EPZ1 Cluster: ATP-dependent RNA helicase; n=2; Bacill... 54 4e-06
UniRef50_Q30YG9 Cluster: DEAD/DEAH box helicase-like; n=3; Delta... 54 4e-06
UniRef50_Q1I3W1 Cluster: ATP-dependent RNA helicase RhlE, DEAD b... 54 4e-06
UniRef50_A1USG3 Cluster: DEAD/DEAH box helicase domain/helicase ... 54 4e-06
UniRef50_Q54VF1 Cluster: Putative uncharacterized protein; n=1; ... 54 4e-06
UniRef50_A2E5C2 Cluster: DEAD/DEAH box helicase family protein; ... 54 4e-06
UniRef50_Q6C024 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 54 4e-06
UniRef50_P32892 Cluster: ATP-dependent RNA helicase DRS1; n=13; ... 54 4e-06
UniRef50_Q09903 Cluster: ATP-dependent RNA helicase drs1; n=1; S... 54 4e-06
UniRef50_Q80Y44 Cluster: Probable ATP-dependent RNA helicase DDX... 54 4e-06
UniRef50_Q13206 Cluster: Probable ATP-dependent RNA helicase DDX... 54 4e-06
UniRef50_Q2H2J1 Cluster: ATP-dependent RNA helicase DBP4; n=14; ... 54 4e-06
UniRef50_Q07886 Cluster: Probable ATP-dependent RNA helicase Dbp... 54 4e-06
UniRef50_Q6C7X8 Cluster: ATP-dependent RNA helicase DBP10; n=3; ... 54 4e-06
UniRef50_Q836U7 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 54 6e-06
UniRef50_Q2BMZ1 Cluster: ATP-dependent RNA helicase; n=1; Neptun... 54 6e-06
UniRef50_Q1WSN6 Cluster: ATP-dependent RNA helicase; n=1; Lactob... 54 6e-06
UniRef50_A3TJG3 Cluster: ATP-dependent RNA helicase; n=5; Actino... 54 6e-06
UniRef50_Q013X8 Cluster: DEAD/DEAH box RNA helicase; n=1; Ostreo... 54 6e-06
UniRef50_A5BHG9 Cluster: Putative uncharacterized protein; n=1; ... 54 6e-06
UniRef50_Q95XM9 Cluster: Putative uncharacterized protein; n=2; ... 54 6e-06
UniRef50_Q675R0 Cluster: ATP-dependent 61 kDa nucleolar RNA heli... 54 6e-06
UniRef50_Q4MYL1 Cluster: ATP-dependent RNA helicase, putative; n... 54 6e-06
UniRef50_A7TSU7 Cluster: Putative uncharacterized protein; n=1; ... 54 6e-06
UniRef50_Q96XQ7 Cluster: 337aa long hypothetical ATP-dependent R... 54 6e-06
UniRef50_Q0UZ59 Cluster: ATP-dependent RNA helicase DBP9; n=1; P... 54 6e-06
UniRef50_UPI000051A2EE Cluster: PREDICTED: similar to Helicase C... 53 8e-06
UniRef50_Q8D563 Cluster: Superfamily II DNA and RNA helicase; n=... 53 8e-06
UniRef50_Q7NAY1 Cluster: SrmB; n=1; Mycoplasma gallisepticum|Rep... 53 8e-06
UniRef50_Q9FQ90 Cluster: Putative chloroplast RNA helicase VDL' ... 53 8e-06
UniRef50_Q01EH4 Cluster: Ddx49 Ddx49-related DEAD box helicase s... 53 8e-06
UniRef50_A4S6F2 Cluster: Predicted protein; n=1; Ostreococcus lu... 53 8e-06
UniRef50_Q7Q0A7 Cluster: ENSANGP00000011621; n=5; Endopterygota|... 53 8e-06
UniRef50_Q6BG49 Cluster: RNA helicase, putative; n=1; Paramecium... 53 8e-06
UniRef50_Q24I45 Cluster: DEAD/DEAH box helicase family protein; ... 53 8e-06
UniRef50_Q1AG34 Cluster: Ded1-like DEAD-box RNA helicase; n=1; C... 53 8e-06
UniRef50_O97032 Cluster: DjVLGB; n=2; Dugesia|Rep: DjVLGB - Duge... 53 8e-06
UniRef50_A2DP01 Cluster: DEAD/DEAH box helicase family protein; ... 53 8e-06
UniRef50_Q97WT0 Cluster: ATP-dependent RNA helicase; n=4; Sulfol... 53 8e-06
UniRef50_Q8GY84 Cluster: DEAD-box ATP-dependent RNA helicase 10;... 53 8e-06
UniRef50_Q6FU81 Cluster: ATP-dependent RNA helicase MSS116, mito... 53 8e-06
UniRef50_P0C2N7 Cluster: ATP-dependent RNA helicase DRS1; n=2; C... 53 8e-06
UniRef50_Q8NHQ9 Cluster: ATP-dependent RNA helicase DDX55; n=86;... 53 8e-06
UniRef50_Q86XP3 Cluster: ATP-dependent RNA helicase DDX42; n=47;... 53 8e-06
UniRef50_Q10202 Cluster: ATP-dependent RNA helicase dbp3; n=1; S... 53 8e-06
UniRef50_Q4V836 Cluster: MGC114699 protein; n=9; Deuterostomia|R... 53 1e-05
UniRef50_Q9PPQ7 Cluster: ATP-dependent RNA helicase; n=1; Ureapl... 53 1e-05
UniRef50_A1SQH8 Cluster: DEAD/DEAH box helicase domain protein p... 53 1e-05
UniRef50_A7P8T9 Cluster: Chromosome chr3 scaffold_8, whole genom... 53 1e-05
UniRef50_A7P4J7 Cluster: Chromosome chr4 scaffold_6, whole genom... 53 1e-05
UniRef50_Q9VRI0 Cluster: CG1666-PA; n=22; Eumetazoa|Rep: CG1666-... 53 1e-05
UniRef50_Q7R388 Cluster: GLP_111_80478_82724; n=1; Giardia lambl... 53 1e-05
UniRef50_Q6C2D3 Cluster: Yarrowia lipolytica chromosome F of str... 53 1e-05
UniRef50_Q96GQ7 Cluster: Probable ATP-dependent RNA helicase DDX... 53 1e-05
UniRef50_Q9KNA4 Cluster: ATP-dependent RNA helicase, DEAD box fa... 52 1e-05
UniRef50_Q2J6D3 Cluster: DEAD/DEAH box helicase-like; n=2; Frank... 52 1e-05
>UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III;
n=366; root|Rep: Eukaryotic initiation factor 4A-III -
Homo sapiens (Human)
Length = 411
Score = 144 bits (350), Expect = 2e-33
Identities = 77/131 (58%), Positives = 96/131 (73%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
I+GRDVIAQ+QSGTGKTATFSIS+LQ +D +RE QALILAPTRELA QIQK ++ALGD+
Sbjct: 73 IKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDY 132
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKAD 615
+N +CHACIGGTNV EDIR+L+ G +V G + R + + L +AD
Sbjct: 133 MNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM--IRRRSLRTRAIKMLVLDEAD 190
Query: 616 EMLSRGFKGQI 648
EML++GFK QI
Sbjct: 191 EMLNKGFKEQI 201
Score = 61.3 bits (142), Expect = 3e-08
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = +2
Query: 146 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
V TFD M L+E+LLRGIYAYGFEKPSAIQQRAI
Sbjct: 36 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAI 69
>UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=37;
Bilateria|Rep: Eukaryotic initiation factor 4A-II - Homo
sapiens (Human)
Length = 407
Score = 142 bits (345), Expect = 7e-33
Identities = 76/131 (58%), Positives = 97/131 (74%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
I+G DVIAQAQSGTGKTATF+ISILQQ++ +E QAL+LAPTRELAQQIQKV++ALGD+
Sbjct: 68 IKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDY 127
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKAD 615
+ A CHACIGGTNVR ++++L+ +V + ++ R S + F L +AD
Sbjct: 128 MGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMF-VLDEAD 186
Query: 616 EMLSRGFKGQI 648
EMLSRGFK QI
Sbjct: 187 EMLSRGFKDQI 197
Score = 93.1 bits (221), Expect = 8e-18
Identities = 43/68 (63%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Frame = +2
Query: 65 NGPSKDQG-SYDGPPGMDP-GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQ 238
+G S D + GP GMDP G ++++W+++V+ FDDMNLKE LLRGIYAYGFEKPSAIQQ
Sbjct: 2 SGGSADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQ 61
Query: 239 RAIMPSSK 262
RAI+P K
Sbjct: 62 RAIIPCIK 69
>UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=5; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 434
Score = 98.3 bits (234), Expect = 2e-19
Identities = 46/89 (51%), Positives = 64/89 (71%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
I G+DV+AQAQSGTGKT TF+I LQ+ID + R+ Q +ILAP RELA+QI VV +G +
Sbjct: 91 ILGKDVLAQAQSGTGKTGTFTIGALQRIDPNQRKTQVIILAPVRELAKQIYDVVKGIGQY 150
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVV 522
LN + CIGGT+ +E + + GV +++
Sbjct: 151 LNIEAFCCIGGTSTQETREKCKQGVHIII 179
Score = 63.3 bits (147), Expect = 7e-09
Identities = 26/43 (60%), Positives = 36/43 (83%)
Frame = +2
Query: 125 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 253
L +W + VETF+D+ L ++LLRGI++YGFE+PSAIQQ+AI P
Sbjct: 47 LQENWIEQVETFEDLTLSKDLLRGIFSYGFERPSAIQQKAIKP 89
>UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;
Eukaryota|Rep: ATP-dependent RNA helicase DHH1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 506
Score = 98.3 bits (234), Expect = 2e-19
Identities = 55/128 (42%), Positives = 78/128 (60%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
I GRD++A+A++GTGKTA F I L+++ + + QALI+ PTRELA Q +VV LG H
Sbjct: 81 ITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKH 140
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKAD 615
C GGTN+R+DI +L V ++VG + + +R A S F + +AD
Sbjct: 141 CGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDL-ASRKVADLSDCSLF-IMDEAD 198
Query: 616 EMLSRGFK 639
+MLSR FK
Sbjct: 199 KMLSRDFK 206
Score = 44.0 bits (99), Expect = 0.005
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +2
Query: 155 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
TF+D LK ELL GI+ GFEKPS IQ+ AI
Sbjct: 47 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAI 77
>UniRef50_A5BNE7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 339
Score = 97.9 bits (233), Expect = 3e-19
Identities = 46/67 (68%), Positives = 55/67 (82%)
Frame = +1
Query: 253 FIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 432
F +G DVI QAQSGTGKTATF ILQQ++ + +CQAL+LAPTRELAQQI+KV+ ALGD
Sbjct: 46 FCKGLDVIQQAQSGTGKTATFCSGILQQLNEELTQCQALVLAPTRELAQQIEKVMRALGD 105
Query: 433 HLNAKCH 453
HLN K +
Sbjct: 106 HLNVKIY 112
>UniRef50_Q4T4A9 Cluster: Chromosome undetermined SCAF9757, whole
genome shotgun sequence; n=2; Euteleostomi|Rep:
Chromosome undetermined SCAF9757, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 215
Score = 95.1 bits (226), Expect = 2e-18
Identities = 42/57 (73%), Positives = 49/57 (85%), Gaps = 1/57 (1%)
Frame = +2
Query: 95 DGPPGMDP-GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSK 262
+GP GMDP G ++T+WD VV+ FDDMNLKE LLRG+YAYGFEKPSAIQQRAI+P K
Sbjct: 10 NGPEGMDPDGVIETNWDTVVDNFDDMNLKESLLRGVYAYGFEKPSAIQQRAILPCIK 66
Score = 85.4 bits (202), Expect = 2e-15
Identities = 43/53 (81%), Positives = 48/53 (90%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 414
I+G DVIAQAQSGTGKTATF ISILQ+IDTS++E QALILAPTRELAQQ K+
Sbjct: 65 IKGHDVIAQAQSGTGKTATFVISILQRIDTSLKETQALILAPTRELAQQEWKL 117
>UniRef50_A5BYF4 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 377
Score = 91.5 bits (217), Expect = 2e-17
Identities = 41/66 (62%), Positives = 54/66 (81%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
IQG DVIAQAQSGTGKT+ F++++ Q +DTS RE QALI +PTRELA Q +KV++A+GD
Sbjct: 311 IQGHDVIAQAQSGTGKTSMFALTVYQMVDTSNREVQALISSPTRELASQTEKVILAIGDS 370
Query: 436 LNAKCH 453
+N + H
Sbjct: 371 VNIQAH 376
Score = 60.1 bits (139), Expect = 7e-08
Identities = 24/41 (58%), Positives = 34/41 (82%)
Frame = +2
Query: 131 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 253
T+ +++ +FD M +K +LLRGIYAY FEKPSA+QQRA++P
Sbjct: 269 TEGVELIMSFDQMGIKNDLLRGIYAYSFEKPSAVQQRAVLP 309
>UniRef50_A2AAP7 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide 48;
n=5; Fungi/Metazoa group|Rep: DEAD (Asp-Glu-Ala-Asp) box
polypeptide 48 - Mus musculus (Mouse)
Length = 299
Score = 91.1 bits (216), Expect = 3e-17
Identities = 60/131 (45%), Positives = 78/131 (59%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
I+GRDVIAQ+QSGTGKTATFS+S+LQ +D Q L+ ALGD+
Sbjct: 73 IKGRDVIAQSQSGTGKTATFSVSVLQCLDI-----QGLL----------------ALGDY 111
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKAD 615
+N +CHACIGGTNV EDIR+L+ G +V G + R + + L +AD
Sbjct: 112 MNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM--IRRRSLRTRAIKMLVLDEAD 169
Query: 616 EMLSRGFKGQI 648
EML++GFK QI
Sbjct: 170 EMLNKGFKEQI 180
Score = 61.3 bits (142), Expect = 3e-08
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = +2
Query: 146 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
V TFD M L+E+LLRGIYAYGFEKPSAIQQRAI
Sbjct: 36 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAI 69
>UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome
shotgun sequence; n=5; Euteleostomi|Rep: Chromosome 15
SCAF14542, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 366
Score = 89.8 bits (213), Expect = 7e-17
Identities = 42/64 (65%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Frame = +2
Query: 74 SKDQGSYDGPPGMDP-GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIM 250
SKD G GP GM+P G ++++W ++ + FDDMNLKE LLRGIYAYGFEKPSAIQQRAI+
Sbjct: 11 SKDHG---GPDGMEPDGIIESNWTEITDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAII 67
Query: 251 PSSK 262
P K
Sbjct: 68 PCIK 71
Score = 78.2 bits (184), Expect = 2e-13
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 402
I+G DVIAQAQSGTGKTATF+ISILQQ++ +E QAL+LAPTRELAQQ
Sbjct: 70 IKGYDVIAQAQSGTGKTATFAISILQQLEIDQKETQALVLAPTRELAQQ 118
>UniRef50_Q0E2Q3 Cluster: Putative eukaryotic initiation factor
4A-2; n=5; Oryza sativa|Rep: Putative eukaryotic
initiation factor 4A-2 - Oryza sativa subsp. japonica
(Rice)
Length = 416
Score = 89.4 bits (212), Expect = 9e-17
Identities = 55/129 (42%), Positives = 73/129 (56%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 441
G D+I Q+ GT T T ILQ++D + ECQAL+L PT +LA + Q V+ LG L+
Sbjct: 85 GLDIIQQSLFGT--TVTLCCGILQRLDYASTECQALVLVPTHDLAHETQNVIGVLGQFLS 142
Query: 442 AKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKADEM 621
AK HA GGT+ ED + L GV + VG C + + A C + L +ADE+
Sbjct: 143 AKAHAFCGGTSAHEDQQILSTGVQVAVG--TPCHVLGMLQGRALCPDHIRMFVLDEADEV 200
Query: 622 LSRGFKGQI 648
L RGFK QI
Sbjct: 201 L-RGFKDQI 208
>UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4;
Dikarya|Rep: ATP-dependent RNA helicase DHH1 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 625
Score = 88.6 bits (210), Expect = 2e-16
Identities = 56/150 (37%), Positives = 90/150 (60%), Gaps = 5/150 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ GRD++A+A++GTGKTA+F I L +I+TS+ QALIL PTRELA Q +V LG H
Sbjct: 71 LTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAH 130
Query: 436 L-NAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKA 612
+ N + GGT +R+DI +L+ V ++VG + + ++ AS + F + +A
Sbjct: 131 IPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDL-GSKGIASLNKCGVF-VMDEA 188
Query: 613 DEMLSRGF----KGQIP*CPQDVVSLMFKS 690
D++LS F + + CPQ+ ++F +
Sbjct: 189 DKLLSEDFMPVIEQTLALCPQERQVMLFSA 218
Score = 45.2 bits (102), Expect = 0.002
Identities = 25/55 (45%), Positives = 31/55 (56%)
Frame = +2
Query: 83 QGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
QG P + P T D Q F+D L+ ELL GIY GFE+PS IQ++AI
Sbjct: 14 QGLAAPPKDLRPQTEDVTATQG-SRFEDFGLRRELLMGIYTAGFERPSPIQEQAI 67
>UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase -
Symbiobacterium thermophilum
Length = 526
Score = 88.2 bits (209), Expect = 2e-16
Identities = 42/92 (45%), Positives = 59/92 (64%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 429
A +QG+DVI QAQ+GTGKTA F + I++++ R QAL+L PTRELA Q+ + + +G
Sbjct: 39 ALLQGKDVIGQAQTGTGKTAAFGVPIVERLVPGQRAVQALVLTPTRELAIQVAEEITKIG 98
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
H K A GG ++ IR L GV +V+G
Sbjct: 99 RHARVKTIAIYGGQSIERQIRSLRFGVDVVIG 130
Score = 33.5 bits (73), Expect = 6.5
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 155 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
TF D+ L E++L+ + GFE+PS IQ +AI
Sbjct: 7 TFRDLALSEKVLKALDDMGFEEPSPIQAQAI 37
>UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent RNA helicase -
Rhodopirellula baltica
Length = 452
Score = 87.4 bits (207), Expect = 4e-16
Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 8/155 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDT--SIRECQALILAPTRELAQQIQKVVIALG 429
+ G+DVI QA++GTGKTA FSI IL+Q+D+ R+ QA+++ PTRELA Q+ L
Sbjct: 79 LNGKDVIGQARTGTGKTAAFSIPILEQLDSLEDCRDPQAIVIVPTRELADQVAAEAERLA 138
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFW--FL 603
+ + GG N+ +RQLENG LVVG + +N W L
Sbjct: 139 RGVPTEIAVLSGGKNMNRQLRQLENGTQLVVGTPGRVH----DHLQRGTLRTNNVWCVVL 194
Query: 604 MKADEMLSRGFKGQIP----*CPQDVVSLMFKSYL 696
+AD ML GF+ QI CP++ +L+ + L
Sbjct: 195 DEADRMLDIGFRPQIERIMRKCPRNRQTLLLSATL 229
>UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Euryarchaeota|Rep: DEAD/DEAH box helicase domain
protein - Methanococcus maripaludis
Length = 541
Score = 87.4 bits (207), Expect = 4e-16
Identities = 55/128 (42%), Positives = 75/128 (58%), Gaps = 1/128 (0%)
Frame = +1
Query: 256 IQG-RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 432
I+G RD++ QAQ+GTGKTA F I IL+ ID S R QALILAPTRELA Q+ + + ++
Sbjct: 37 IEGKRDIVGQAQTGTGKTAAFGIPILETIDESSRNTQALILAPTRELAIQVAEEIDSIKG 96
Query: 433 HLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKA 612
GG ++ IR+L GV +VVG + I +R + S + L +A
Sbjct: 97 SKRLNVFPVYGGQSIDRQIRELRRGVQIVVG-TPGRILDHISRRTIKLENVS-YVVLDEA 154
Query: 613 DEMLSRGF 636
DEML+ GF
Sbjct: 155 DEMLNMGF 162
>UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11;
Cyanobacteria|Rep: ATP-dependent RNA helicase - Anabaena
sp. (strain PCC 7120)
Length = 513
Score = 85.4 bits (202), Expect = 2e-15
Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ GRDV+ Q+Q+GTGKTA FS+ IL+++D + QA++L PTRELA Q+ + +
Sbjct: 38 LSGRDVVGQSQTGTGKTAAFSLPILERLDPQQKAVQAIVLTPTRELAIQVHDAMAQFVGN 97
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLM-KA 612
+ A GG ++ + QL+ GV +VVG I + R Q WF++ +A
Sbjct: 98 SGLRTLAIYGGQSIDRQMLQLKRGVHIVVGTPGRVIDL-LERGNLKLDQVK--WFVLDEA 154
Query: 613 DEMLSRGF 636
DEMLS GF
Sbjct: 155 DEMLSMGF 162
>UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12;
Clostridium|Rep: ATP-dependent RNA helicase -
Clostridium perfringens
Length = 528
Score = 83.8 bits (198), Expect = 5e-15
Identities = 52/129 (40%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALG 429
++G D+I QAQ+GTGKTA F +I+ D S ++ +ALILAPTRELA Q+ + ++ LG
Sbjct: 39 LEGHDIIGQAQTGTGKTAAFGCAIINNADFSGKKKSPKALILAPTRELAIQVNEELVRLG 98
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMK 609
H GG + IR L+NGV +VVG + + R + F L +
Sbjct: 99 KHEKLSVLPIYGGQPIDRQIRALKNGVDIVVGTPGRVLDL--IRRKSLPLNDIGFLVLDE 156
Query: 610 ADEMLSRGF 636
ADEML+ GF
Sbjct: 157 ADEMLNMGF 165
Score = 37.9 bits (84), Expect = 0.30
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
FDD+ LKE LL+ I GFE+PS IQ +I
Sbjct: 6 FDDLGLKESLLKAIKDMGFEEPSQIQAESI 35
>UniRef50_A0BEU9 Cluster: Chromosome undetermined scaffold_102,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_102,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 395
Score = 83.4 bits (197), Expect = 6e-15
Identities = 38/90 (42%), Positives = 58/90 (64%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
IQGRDV+ Q TGKT S+S+L D S+++ Q LIL TR+L ++ +++ALG
Sbjct: 57 IQGRDVVIQNFRSTGKTTVMSLSVLSIFDLSVKKIQVLILQKTRKLTEENAGLIMALGKF 116
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
LN HAC G ++++DI ++ GV +V+G
Sbjct: 117 LNVSIHACSEGNSIQDDISVVQQGVQIVLG 146
Score = 47.6 bits (108), Expect = 4e-04
Identities = 23/70 (32%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Frame = +2
Query: 146 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP--SSKDAML-SLKPSQELEKLLLS 316
+ TF+ M L++ELLRGI A+GF +P +QQRA++P +D ++ + + + + + LS
Sbjct: 20 IQSTFESMKLRKELLRGINAFGFIRPLEVQQRALVPLIQGRDVVIQNFRSTGKTTVMSLS 79
Query: 317 LYRFYNKSIQ 346
+ ++ S++
Sbjct: 80 VLSIFDLSVK 89
>UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH
family; n=2; Desulfovibrio vulgaris subsp. vulgaris|Rep:
ATP-dependent RNA helicase, DEAD/DEAH family -
Desulfovibrio vulgaris (strain Hildenborough / ATCC
29579 / NCIMB8303)
Length = 532
Score = 83.0 bits (196), Expect = 8e-15
Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++GRDVI QAQ+GTGKTA F + +LQ+ID + R QAL+L PTRELA Q+ + AL H
Sbjct: 40 LEGRDVIGQAQTGTGKTAAFGLPLLQRIDAADRSVQALVLCPTRELALQVANGLTALAKH 99
Query: 436 L-NAKCHACIGGTNVREDIRQLENGVMLVVG 525
L + + GG + L G +VVG
Sbjct: 100 LRGVRILSVYGGQPIEPQASALRRGAQVVVG 130
Score = 37.1 bits (82), Expect = 0.53
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +2
Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
VE+F D+ L+EELL+ I GF +PS IQ AI
Sbjct: 4 VESFKDLPLEEELLKAIEELGFTEPSPIQSIAI 36
>UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole
genome shotgun sequence; n=3; Tetraodontidae|Rep:
Chromosome undetermined SCAF7914, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 502
Score = 82.6 bits (195), Expect = 1e-14
Identities = 39/90 (43%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ GRD++A+A++GTGK+ + I +L++ID QAL+L PTRELA Q+ ++ I + H
Sbjct: 124 LSGRDILARAKNGTGKSGAYLIPMLERIDLKKDHIQALVLVPTRELALQVSQISIQIAKH 183
Query: 436 L-NAKCHACIGGTNVREDIRQLENGVMLVV 522
L K A GGTN+R+DI +L+ V +V+
Sbjct: 184 LGGVKVMATTGGTNLRDDIMRLDETVHVVI 213
Score = 38.3 bits (85), Expect = 0.23
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F+D LK ELL GI+ G+EKPS IQ+ +I
Sbjct: 91 FEDYCLKRELLMGIFEMGWEKPSPIQEESI 120
>UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Chromohalobacter salexigens DSM 3043|Rep: DEAD/DEAH box
helicase-like protein - Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB13768)
Length = 568
Score = 81.8 bits (193), Expect = 2e-14
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 429
A ++GRDV+ QAQ+GTGKTA F++ +L ++D RE Q L+LAPTRELAQQ+ + G
Sbjct: 42 ALLEGRDVLGQAQTGTGKTAAFALPLLSRLDLQRREPQVLVLAPTRELAQQVAASFVQYG 101
Query: 430 DHLNA-KCHACIGGTNVREDIRQLENGVMLVVG 525
+ + + GG RE + L G ++VG
Sbjct: 102 RGVKGLEVLSLCGGQEYREQLSGLRRGAQVIVG 134
>UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=16; cellular organisms|Rep: DEAD-box ATP-dependent RNA
helicase ydbR - Bacillus anthracis
Length = 528
Score = 81.8 bits (193), Expect = 2e-14
Identities = 46/127 (36%), Positives = 70/127 (55%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+QG+D+I QAQ+GTGKTA F + +L ++DT Q +++APTRELA Q+ + + +G H
Sbjct: 37 LQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKH 96
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKAD 615
+ GG ++ IR L+ ++VG + I R Q L +AD
Sbjct: 97 KRVRILPIYGGQDINRQIRALKKHPHIIVG-TPGRILDHINRKTLRLQNVETV-VLDEAD 154
Query: 616 EMLSRGF 636
EML+ GF
Sbjct: 155 EMLNMGF 161
>UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase - Bacillus
halodurans
Length = 539
Score = 81.0 bits (191), Expect = 3e-14
Identities = 51/129 (39%), Positives = 68/129 (52%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 429
A + G DVI QAQ+GTGKTA F I +++++ T R QALIL PTRELA Q+ + L
Sbjct: 39 AILAGGDVIGQAQTGTGKTAAFGIPVVEKVSTG-RHVQALILTPTRELAIQVSGEIQKLS 97
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMK 609
H + GG ++ I+ L+ GV +V+G I R N L +
Sbjct: 98 KHKKIRTLPIYGGQSIVHQIKALKQGVQVVIGTPGRIIDH--LRRKTLILDHVNTVILDE 155
Query: 610 ADEMLSRGF 636
ADEML GF
Sbjct: 156 ADEMLDMGF 164
>UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1;
Mycoplasma pulmonis|Rep: ATP-DEPENDENT RNA HELICASE -
Mycoplasma pulmonis
Length = 480
Score = 80.6 bits (190), Expect = 4e-14
Identities = 40/88 (45%), Positives = 56/88 (63%)
Frame = +1
Query: 259 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 438
+G+D+I QAQ+GTGKTA F+I IL +D SI Q L++APTRELA QI + LG +
Sbjct: 37 EGKDIIGQAQTGTGKTAAFAIPILSNLDCSINRIQHLVIAPTRELANQIYDQLNILGKYT 96
Query: 439 NAKCHACIGGTNVREDIRQLENGVMLVV 522
+K +GG + + L +GV +VV
Sbjct: 97 CSKIALILGGVSYEKQKAALNSGVNIVV 124
Score = 35.5 bits (78), Expect = 1.6
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 253
F MN+K E+L+ + GFEKP+ IQ+ A++P
Sbjct: 3 FTQMNIKSEILKSLDEIGFEKPTKIQE-AVLP 33
>UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia
psychrerythraea 34H|Rep: RNA helicase DeaD - Colwellia
psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 611
Score = 80.6 bits (190), Expect = 4e-14
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG-D 432
+ G+DV+ +AQ+GTGKTA F + L +IDTSI++ Q ++LAPTRELA Q+ + + + G D
Sbjct: 50 LAGKDVLGEAQTGTGKTAAFGLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKD 109
Query: 433 HLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
+ GG + +QLE G +VVG
Sbjct: 110 MKGLRVATLYGGQSYGPQFQQLERGAQVVVG 140
>UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1;
Flavobacteria bacterium BBFL7|Rep: ATP-dependent RNA
helicase - Flavobacteria bacterium BBFL7
Length = 644
Score = 80.6 bits (190), Expect = 4e-14
Identities = 51/128 (39%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Frame = +1
Query: 268 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 444
D I AQ+GTGKTA F + +L ID + RE QALILAPTRELAQQI + + HL
Sbjct: 53 DFIGLAQTGTGKTAAFGLPLLDLIDVNSREVQALILAPTRELAQQICGQMEQMSKHLGKL 112
Query: 445 KCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKADEML 624
GG N+ IR + G ++V + + R + L +ADEML
Sbjct: 113 NVVPVFGGANIMNQIRDIRRGAQIIVATPGRLMDLMKRREVK--LDALKYMVLDEADEML 170
Query: 625 SRGFKGQI 648
+ GFK I
Sbjct: 171 NMGFKEDI 178
>UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine
gamma proteobacterium HTCC2080|Rep: ATP-dependent RNA
helicase - marine gamma proteobacterium HTCC2080
Length = 582
Score = 80.6 bits (190), Expect = 4e-14
Identities = 38/90 (42%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++GRDV+ AQ+GTGKTA F++ IL ID +R QAL+L PTRELAQQ+ + + G
Sbjct: 44 LEGRDVVGLAQTGTGKTAAFALPILANIDVKVRSPQALVLCPTRELAQQVAEAFRSYGRG 103
Query: 436 LNA-KCHACIGGTNVREDIRQLENGVMLVV 522
+ + + GG ++R+ ++ L G +VV
Sbjct: 104 MGGLRILSIFGGADMRQQLKSLREGTHIVV 133
>UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n=1;
Mus musculus|Rep: UPI0000566899 UniRef100 entry - Mus
musculus
Length = 449
Score = 80.2 bits (189), Expect = 6e-14
Identities = 41/128 (32%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ GRD++A+A++GTGK+ + I +L+++D QA+++ PTRELA Q+ ++ I + H
Sbjct: 116 LSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKH 175
Query: 436 L-NAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKA 612
+ AK A GGTN+R+D+ +L++ +V+ + + + C L +A
Sbjct: 176 MGGAKVMATTGGTNLRDDVMRLDDTGHVVIATPGRILDL--IKKCLEKVDHVQMVVLDEA 233
Query: 613 DEMLSRGF 636
D++LS+ F
Sbjct: 234 DKLLSQDF 241
>UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3;
Deltaproteobacteria|Rep: ATP-dependent RNA helicase -
Bdellovibrio bacteriovorus
Length = 505
Score = 80.2 bits (189), Expect = 6e-14
Identities = 55/133 (41%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ G+D+I QA++G+GKTA FS+ IL +I+ QALIL PTRELA Q+ + LG
Sbjct: 82 LAGKDIIGQAKTGSGKTAAFSLPILNKINLDQPLLQALILCPTRELASQVVTEIRKLGRR 141
Query: 436 L-NAKCHACIGGTNVREDIRQLENGVMLVVG-HSRSCIWI**TRPCASCQQPSNFWFLMK 609
L K A GG + RE LENGV +VVG R ++ R S + L +
Sbjct: 142 LPGLKVLAMTGGQSGREQADALENGVQIVVGTPGRLADFVGRNRIDLSAVKTV---VLDE 198
Query: 610 ADEMLSRGFKGQI 648
AD+ML GF +I
Sbjct: 199 ADKMLDMGFADEI 211
>UniRef50_Q23U16 Cluster: DEAD/DEAH box helicase family protein;
n=1; Tetrahymena thermophila SB210|Rep: DEAD/DEAH box
helicase family protein - Tetrahymena thermophila SB210
Length = 475
Score = 79.8 bits (188), Expect = 8e-14
Identities = 43/62 (69%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ-IQKVVIALGD 432
I+G+D IAQAQSGTGKTATFSI+ LQ IDTS QALILAPTRELAQQ I ++ LG
Sbjct: 69 IKGKDTIAQAQSGTGKTATFSIATLQVIDTSSPHTQALILAPTRELAQQTITRIFFILGV 128
Query: 433 HL 438
+L
Sbjct: 129 NL 130
Score = 54.0 bits (124), Expect = 4e-06
Identities = 30/81 (37%), Positives = 45/81 (55%)
Frame = +1
Query: 406 QKVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQP 585
+KV++ LG+ L +AC GGT+ +ED ++L GV +VVG + + +
Sbjct: 186 KKVIMYLGEFLKVSAYACTGGTDPKEDRKRLREGVQVVVGTPGRVLDL--IQKKTLVTDH 243
Query: 586 SNFWFLMKADEMLSRGFKGQI 648
+ L +ADEML RGFK QI
Sbjct: 244 LKLFILDEADEMLGRGFKDQI 264
>UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35;
Vibrionales|Rep: ATP-dependent RNA helicase DeaD -
Vibrio cholerae
Length = 663
Score = 78.6 bits (185), Expect = 2e-13
Identities = 47/128 (36%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++GRD + +AQ+GTGKTA FS+ +L +++ S + QA+++APTRELA Q+ + LG +
Sbjct: 61 LEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQN 120
Query: 436 LNA-KCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKA 612
+ K GG ++ + +R L++G +VVG + + TR + F L +A
Sbjct: 121 IKGLKVLEIYGGASILDQMRALKSGAHIVVG-TPGRVKDLITRDRLHLDECHTF-ILDEA 178
Query: 613 DEMLSRGF 636
DEML GF
Sbjct: 179 DEMLKMGF 186
>UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=2;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Oceanobacter sp. RED65
Length = 614
Score = 78.6 bits (185), Expect = 2e-13
Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++G+DV+ AQ+GTGKTA F++ +L + +RE Q L+LAPTRELAQQ+ V + H
Sbjct: 41 LEGKDVLGLAQTGTGKTAAFTLPLLARTQNEVREPQVLVLAPTRELAQQVAMAVESYSKH 100
Query: 436 -LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
N K + GG++ R L+ G VVG
Sbjct: 101 ESNVKVASIYGGSDFGSQFRALKQGPQWVVG 131
>UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=13; Bacteroidetes|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family protein - Dokdonia
donghaensis MED134
Length = 638
Score = 78.2 bits (184), Expect = 2e-13
Identities = 49/130 (37%), Positives = 71/130 (54%), Gaps = 4/130 (3%)
Frame = +1
Query: 259 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 438
+ RD++A AQ+GTGKTA F +LQ ID S + Q LI+APTREL QI + H+
Sbjct: 38 EDRDMVALAQTGTGKTAAFGFPLLQNIDASSKTTQGLIIAPTRELCLQITNEMKLYAKHI 97
Query: 439 -NAKCHACIGGTNVREDIRQLENGVMLVV---GHSRSCIWI**TRPCASCQQPSNFWFLM 606
+ A GG+N++E R++ G +VV G + + R + S + L
Sbjct: 98 KGVRVVAVYGGSNIQEQAREISRGAQIVVATPGRMQDMM----RRRMVDITKLS-YCVLD 152
Query: 607 KADEMLSRGF 636
+ADEML+ GF
Sbjct: 153 EADEMLNMGF 162
Score = 33.9 bits (74), Expect = 4.9
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 155 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
TFD + L LL+ I GFE PS IQ+ AI
Sbjct: 2 TFDQLGLNAPLLQAIADMGFETPSKIQEEAI 32
>UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1;
Mesoplasma florum|Rep: ATP-dependent RNA helicase -
Mesoplasma florum (Acholeplasma florum)
Length = 666
Score = 77.8 bits (183), Expect = 3e-13
Identities = 46/133 (34%), Positives = 76/133 (57%), Gaps = 1/133 (0%)
Frame = +1
Query: 253 FIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 432
F++G+++ ++ +GTGKTA+F + IL++I+ + R QA+I+APTRELA QI + G
Sbjct: 35 FLEGKNIFGKSSTGTGKTASFVLPILEKIEPNKRRVQAVIMAPTRELAMQIVNQIRIFGS 94
Query: 433 HL-NAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMK 609
+ N IGG ++R+ I++L++ ++V R + R L +
Sbjct: 95 RIENLVIAPLIGGADMRDQIKRLKDSQIVVGTPGRVNDHL--NRKTLKLDDVRTI-ILDE 151
Query: 610 ADEMLSRGFKGQI 648
ADEML GFK +I
Sbjct: 152 ADEMLKMGFKNEI 164
>UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15;
Cyanobacteria|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 624
Score = 77.8 bits (183), Expect = 3e-13
Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIA-LGDHL 438
GRD++ QAQ+GTGKTA F++ +L+++++ + Q L+LAPTRELA Q+ A H
Sbjct: 108 GRDLVGQAQTGTGKTAAFALPLLERLESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHP 167
Query: 439 NAKCHACIGGTNVREDIRQLENGVMLVVG 525
+ K A GGT+ R I L GV +VVG
Sbjct: 168 HLKVLAVYGGTDFRSQISTLRRGVDVVVG 196
>UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Anaeromyxobacter sp. Fw109-5|Rep: DEAD/DEAH box
helicase domain protein - Anaeromyxobacter sp. Fw109-5
Length = 680
Score = 77.8 bits (183), Expect = 3e-13
Identities = 51/147 (34%), Positives = 82/147 (55%), Gaps = 4/147 (2%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 441
G+DVI ++++GTGKTA F+I IL++I R AL++ PTRELA Q+ + AL H +
Sbjct: 57 GKDVIVRSKTGTGKTAAFAIPILERIADGRRRPSALVMCPTRELAIQVAQEFTALAKHRD 116
Query: 442 AKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKADEM 621
A GG ++ E +++LE G ++VG + I+ R + + L +ADEM
Sbjct: 117 LSVVAVYGGASMGEQLQKLEAGAEIIVG-TPGRIYDHIRRRTLKLDE-TMVCCLDEADEM 174
Query: 622 LSRGFKGQI----P*CPQDVVSLMFKS 690
L+ GF ++ P+D L+F +
Sbjct: 175 LNMGFFEEVTRILDNLPKDCQQLLFSA 201
>UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4;
Legionella pneumophila|Rep: ATP-dependent RNA helicase -
Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 589
Score = 77.4 bits (182), Expect = 4e-13
Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+QGRD IA AQ+GTGKTA F++ ILQ + I QALILAPTRELA Q+ + L +
Sbjct: 41 LQGRDAIALAQTGTGKTAAFALPILQNLSPEISTTQALILAPTRELAIQVAEQFELLSKY 100
Query: 436 -LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
N GG ++QL +G +VVG
Sbjct: 101 QRNVTIAVLCGGQEYGRQLKQLRSGAQVVVG 131
>UniRef50_UPI000065E01D Cluster: Homolog of Brachydanio rerio
"Eukaryotic translation initiation factor 4A, isoform
1A.; n=1; Takifugu rubripes|Rep: Homolog of Brachydanio
rerio "Eukaryotic translation initiation factor 4A,
isoform 1A. - Takifugu rubripes
Length = 357
Score = 77.0 bits (181), Expect = 5e-13
Identities = 38/56 (67%), Positives = 47/56 (83%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIA 423
I+G DVIAQ+QSGTGKTAT+ I+ LQ+ID + QA+ILAPTRELA QIQKVV++
Sbjct: 56 IKGFDVIAQSQSGTGKTATYVIAALQRIDMMKEDTQAIILAPTRELANQIQKVVLS 111
Score = 57.6 bits (133), Expect = 4e-07
Identities = 26/38 (68%), Positives = 32/38 (84%)
Frame = +2
Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSK 262
V++F+ M L E LLRGI+AYGFEKPSAIQQ+AI+P K
Sbjct: 20 VDSFEGMMLNENLLRGIFAYGFEKPSAIQQQAIVPCIK 57
>UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ATP
dependent RNA helicase - Lentisphaera araneosa HTCC2155
Length = 537
Score = 76.6 bits (180), Expect = 7e-13
Identities = 47/126 (37%), Positives = 66/126 (52%)
Frame = +1
Query: 259 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 438
Q D+I QAQ+GTGKTA F + I+Q+I+ +++ QALIL PTRELA Q+ + + +
Sbjct: 39 QDHDIIGQAQTGTGKTAAFGLPIVQKIEPGLKKPQALILCPTRELAIQVNEEIKSFCKGR 98
Query: 439 NAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKADE 618
GG + + R L+ GV LVV CI + L +ADE
Sbjct: 99 GITTVTLYGGAPIMDQKRALKKGVDLVVATPGRCIHF--IEDGKLELDSLEYLVLDEADE 156
Query: 619 MLSRGF 636
ML+ GF
Sbjct: 157 MLNMGF 162
>UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A family;
n=1; Methanothermobacter thermautotrophicus str. Delta
H|Rep: ATP-dependent RNA helicase, eIF-4A family -
Methanobacterium thermoautotrophicum
Length = 425
Score = 76.2 bits (179), Expect = 9e-13
Identities = 36/89 (40%), Positives = 56/89 (62%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ G DV+ +AQ+GTGKTA F+I +L+ ++ R QALI+ PTREL Q+ + + +G +
Sbjct: 39 LDGMDVVGEAQTGTGKTAAFAIPVLENLEAE-RVPQALIICPTRELCLQVSEEIKRIGKY 97
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVV 522
+ K A GG ++ I QL GV ++V
Sbjct: 98 MKVKVLAVYGGQSIGNQIAQLRRGVHVIV 126
>UniRef50_Q9S531 Cluster: DEAD-box protein; n=4;
Cystobacterineae|Rep: DEAD-box protein - Myxococcus
xanthus
Length = 808
Score = 75.8 bits (178), Expect = 1e-12
Identities = 45/131 (34%), Positives = 74/131 (56%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
I+G+D+I ++++GTGKTA F + +L++I R +ALIL PTRELA Q+ + L H
Sbjct: 64 IEGKDLIVRSKTGTGKTAAFGLPLLEKIPADERRVRALILCPTRELALQVADELKMLAKH 123
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKAD 615
K A GG ++++ LE G ++VG + ++ R + L +AD
Sbjct: 124 KGLKIAAIYGGASMKQQEDALEEGTPIIVG-TPGRVFDHINRGNLKLDACDHA-VLDEAD 181
Query: 616 EMLSRGFKGQI 648
EML++GF ++
Sbjct: 182 EMLNQGFYEEV 192
>UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytophaga
hutchinsonii ATCC 33406|Rep: ATP-dependent RNA helicase
- Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB
9469)
Length = 580
Score = 75.8 bits (178), Expect = 1e-12
Identities = 50/130 (38%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 441
G+D+ QAQ+GTGKTA F I ++ +D SI + Q+LIL PTRELA Q+ + L
Sbjct: 38 GKDLTGQAQTGTGKTAAFGIPAIEHVDISINQTQSLILCPTRELALQVCTELKKLSKFKK 97
Query: 442 A-KCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKADE 618
+ A GG ++ IR L+ G +VVG + I R + S L +ADE
Sbjct: 98 GLRVLAVYGGESIERQIRDLKAGAHIVVG-TPGRIIDHLDRRTLNASHLSQI-ILDEADE 155
Query: 619 MLSRGFKGQI 648
ML+ GF+ I
Sbjct: 156 MLNMGFREDI 165
>UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Bacteroides
thetaiotaomicron
Length = 647
Score = 75.4 bits (177), Expect = 2e-12
Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 5/172 (2%)
Frame = +1
Query: 259 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 438
+ DV+A AQ+GTGKTA F + +LQQID R Q+LIL PTREL QI + ++
Sbjct: 39 ENNDVVALAQTGTGKTAAFGLPLLQQIDVKNRVPQSLILCPTRELCLQIAGDLNDYSKYI 98
Query: 439 NA-KCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKAD 615
+ K GG+++ IR L+ GV ++V + + R S N + +AD
Sbjct: 99 DGLKVLPVYGGSSIDSQIRSLKRGVHIIVATPGRLLDL-MERKTVSLSTVHNI-VMDEAD 156
Query: 616 EMLSRGFKGQI----P*CPQDVVSLMFKSYLLSGLPCPDGWYLEVTSEAFIG 759
EML+ GF I P++ +L+F + + + YL+ E IG
Sbjct: 157 EMLNMGFTDSINAILADVPKERNTLLFSATMSPEIARISKNYLQNAKEITIG 208
>UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=1;
Desulfotalea psychrophila|Rep: Probable ATP-dependent
RNA helicase - Desulfotalea psychrophila
Length = 632
Score = 75.4 bits (177), Expect = 2e-12
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ G D+I QAQ+GTGKTA F + +L ID S + QAL+LAPTRELAQQ+ +
Sbjct: 90 LAGSDLIGQAQTGTGKTAAFGLPLLNNIDFSKKCVQALVLAPTRELAQQVGDALATYSGD 149
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKAD 615
GG++ + + L G +VVG + + R + L +AD
Sbjct: 150 DGRNVLVVYGGSSYQAQVGGLRRGARVVVGTPGRLLDL--IRQGSLKLDQLKTLVLDEAD 207
Query: 616 EMLSRGFKGQI----P*CPQDVVSLMFKSYLLS 702
EMLS GF I P+D +++F + L S
Sbjct: 208 EMLSMGFIDDIETILSQTPKDRQTMLFSATLSS 240
Score = 33.5 bits (73), Expect = 6.5
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 155 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
+F D NLK +L+ + GF +P+ IQ++AI
Sbjct: 56 SFTDFNLKSDLVANLVKLGFSQPTPIQEKAI 86
>UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;
n=1; Cytophaga hutchinsonii ATCC 33406|Rep: Inducible
ATP-independent RNA helicase - Cytophaga hutchinsonii
(strain ATCC 33406 / NCIMB 9469)
Length = 457
Score = 74.9 bits (176), Expect = 2e-12
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 441
++V+ AQ+GTGKTA F + +LQQI+ S+++ Q L+L PTREL QQ+ K + ++
Sbjct: 40 KNVVGVAQTGTGKTAAFGLPVLQQINPSLQQTQVLVLVPTRELGQQVAKDLFVFSRYIVR 99
Query: 442 AKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKADEM 621
A GG + E I++LE ++V + + R + + L +ADEM
Sbjct: 100 IHTEAVYGGKKIEEQIKKLETPKHILVATPGRLLDL-IARKAVNLSN-LKYLILDEADEM 157
Query: 622 LSRGF 636
L+ GF
Sbjct: 158 LNMGF 162
>UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54;
Gammaproteobacteria|Rep: Cold-shock DEAD box protein A -
Shigella flexneri
Length = 629
Score = 74.9 bits (176), Expect = 2e-12
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ GRDV+ AQ+G+GKTA FS+ +LQ +D ++ Q L+LAPTRELA Q+ + + H
Sbjct: 41 LNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKH 100
Query: 436 L-NAKCHACIGGTNVREDIRQLENGVMLVVG 525
+ A GG +R L G +VVG
Sbjct: 101 MRGVNVVALYGGQRYDVQLRALRQGPQIVVG 131
>UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein;
n=12; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Roseiflexus sp. RS-1
Length = 467
Score = 74.5 bits (175), Expect = 3e-12
Identities = 40/90 (44%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIR-ECQALILAPTRELAQQIQKVVIALGD 432
+ GRDVI AQ+GTGKTA F + ILQ++ R +A+I+ PTRELA+QIQ V+ ALG
Sbjct: 36 LDGRDVIGIAQTGTGKTAAFVLPILQRLMRGPRGRVRAMIVTPTRELAEQIQGVIEALGK 95
Query: 433 HLNAKCHACIGGTNVREDIRQLENGVMLVV 522
+ + GG + I++L GV + V
Sbjct: 96 YTGLRSVTLYGGVGYQGQIQRLRRGVEIAV 125
>UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=90; Bacilli|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Bacillus subtilis
Length = 494
Score = 74.5 bits (175), Expect = 3e-12
Identities = 35/90 (38%), Positives = 55/90 (61%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ +DVI QAQ+GTGKTA F I ++++I+ QA+++APTRELA Q+ + + +G
Sbjct: 38 LSNKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQD 97
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
AK GG ++ IR L+ ++VG
Sbjct: 98 KRAKVLPIYGGQDIGRQIRALKKNPNIIVG 127
>UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4;
Clostridiales|Rep: ATP-dependent RNA helicase -
Clostridium tetani
Length = 386
Score = 74.1 bits (174), Expect = 4e-12
Identities = 39/94 (41%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++ +DVI Q+ +G+GKT + + I Q+IDTS RE QA+ILAPT ELA QI K + L +
Sbjct: 38 LENKDVIGQSPTGSGKTLAYLLPIFQKIDTSKREMQAIILAPTHELAMQINKEIQLLSGN 97
Query: 436 --LNAKCHACIGGTNVREDIRQLENGVMLVVGHS 531
++ IG NV+ I +L+ ++VG S
Sbjct: 98 SKVSVTSTPIIGNANVKRQIEKLKEKPHVIVGSS 131
>UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1;
Bdellovibrio bacteriovorus|Rep: ATP-dependent RNA
helicase - Bdellovibrio bacteriovorus
Length = 656
Score = 74.1 bits (174), Expect = 4e-12
Identities = 44/124 (35%), Positives = 66/124 (53%)
Frame = +1
Query: 268 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 447
D I A +GTGKTA F I +++ ID+++++ QAL+L+PTRELA Q+ + + LG +
Sbjct: 84 DFIGLASTGTGKTAAFGIPLIENIDSTVKDTQALVLSPTRELALQVAEQLTLLGKKKGVR 143
Query: 448 CHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKADEMLS 627
GG + R I ++ G +VV + + Q L +ADEMLS
Sbjct: 144 VVTIYGGASYRTQIDGIKRGAHIVVATPGRLVDF-LEQKMIKLQSVKTV-VLDEADEMLS 201
Query: 628 RGFK 639
GFK
Sbjct: 202 MGFK 205
>UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: ATP-dependent RNA helicase, DEAD box family
- Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 430
Score = 74.1 bits (174), Expect = 4e-12
Identities = 36/90 (40%), Positives = 55/90 (61%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++G +++ QA +GTGKTA + + +LQ+I ++ Q LI+ PTRELA Q+ V LG +
Sbjct: 37 LEGHNLVGQAPTGTGKTAAYLLPVLQRIQRG-KKAQVLIVTPTRELALQVADEVAKLGKY 95
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
L + A GG + IR L GV ++VG
Sbjct: 96 LKVRALAVYGGQAIERQIRGLRQGVEVIVG 125
>UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4;
Saccharomycetaceae|Rep: ATP-dependent rRNA helicase RRP3
- Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 504
Score = 74.1 bits (174), Expect = 4e-12
Identities = 36/81 (44%), Positives = 54/81 (66%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+QG+D++ A++G+GKTA F+I ILQ + T+ + AL+LAPTRELA QI++ ALG
Sbjct: 133 LQGKDIVGIAETGSGKTAAFAIPILQTLYTAAQPYYALVLAPTRELAFQIKETFDALGSS 192
Query: 436 LNAKCHACIGGTNVREDIRQL 498
+ + IGG ++ E R L
Sbjct: 193 MGLRSVCIIGGMSMMEQARDL 213
>UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20;
Francisella|Rep: ATP-dependent RNA helicase -
Francisella tularensis subsp. novicida GA99-3548
Length = 569
Score = 73.3 bits (172), Expect = 7e-12
Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALG 429
+ GRDV+ QAQ+GTGKTA F++ ++ +D + R+ Q L+LAPTRELA Q+ + A
Sbjct: 42 LSGRDVLGQAQTGTGKTAAFALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFA 101
Query: 430 DHLNAKCHACI-GGTNVREDIRQLENGVMLVVG 525
++ ACI GG IR L+ GV +VVG
Sbjct: 102 KNVPNLDVACIYGGQEYGSQIRALKQGVKVVVG 134
>UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=32;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 427
Score = 72.9 bits (171), Expect = 9e-12
Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Frame = +1
Query: 259 QGRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIA 423
+G D+ A AQ+GTGKTA FS+ ++QQ+ S + +ALI APTRELA+QI + A
Sbjct: 37 RGHDIFATAQTGTGKTAAFSLPLIQQLLESGKSASRKTARALIFAPTRELAEQIADNIKA 96
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
+ N A GG + R LENGV ++V
Sbjct: 97 YTKYTNLSVAAIFGGRKMSSQERMLENGVDILV 129
>UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family; n=1; Flavobacterium psychrophilum
JIP02/86|Rep: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family - Flavobacterium psychrophilum
(strain JIP02/86 / ATCC 49511)
Length = 644
Score = 72.5 bits (170), Expect = 1e-11
Identities = 47/127 (37%), Positives = 67/127 (52%), Gaps = 4/127 (3%)
Frame = +1
Query: 268 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH-LNA 444
D++A AQ+GTGKTA F ++Q+ID + R QALIL+PTREL QI + +
Sbjct: 42 DLVALAQTGTGKTAAFGFPVIQKIDANNRNTQALILSPTRELCLQITNELKNYSKYEKGI 101
Query: 445 KCHACIGGTNVREDIRQLENGVMLVV---GHSRSCIWI**TRPCASCQQPSNFWFLMKAD 615
A GG ++ E R ++ G ++V G + I R Q N+ L +AD
Sbjct: 102 NVVAVYGGASITEQARDIKRGAQIIVATPGRMQDMI----NRRLVDISQ-INYCILDEAD 156
Query: 616 EMLSRGF 636
EML+ GF
Sbjct: 157 EMLNMGF 163
Score = 34.3 bits (75), Expect = 3.7
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F+ + L E LLR I GFE P+ +Q++AI
Sbjct: 4 FEQLGLTESLLRAIIDLGFENPTEVQEKAI 33
>UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=7; Bacteria|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Geobacillus kaustophilus
Length = 467
Score = 72.5 bits (170), Expect = 1e-11
Identities = 35/90 (38%), Positives = 55/90 (61%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+Q +DVI QAQ+GTGKTA F I I+++++ QAL++APTRELA Q+ + + +G
Sbjct: 37 LQNKDVIGQAQTGTGKTAAFGIPIVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAV 96
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
+ GG ++ IR L+ ++VG
Sbjct: 97 KRVRVLPIYGGQDIERQIRALKKHPHVIVG 126
>UniRef50_A2EPG4 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 389
Score = 72.1 bits (169), Expect = 2e-11
Identities = 34/89 (38%), Positives = 59/89 (66%)
Frame = +1
Query: 259 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 438
QG++++ Q+Q+G+GKTATFSI L ++ + + + +I++PTRELA Q + + +LG
Sbjct: 56 QGKNIMFQSQNGSGKTATFSIGTLARLRLTSKTTELIIVSPTRELAIQTENTLKSLG--- 112
Query: 439 NAKCHACIGGTNVREDIRQLENGVMLVVG 525
A AC+GG ++ D++ L+ G+ V G
Sbjct: 113 -ANTRACVGGNSLGADVKALQKGIHCVSG 140
Score = 39.9 bits (89), Expect = 0.075
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +2
Query: 143 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
+V T++ M LK EL+ I G+EKPS IQQRAI
Sbjct: 17 EVYPTWESMKLKPELIEAIKKNGWEKPSPIQQRAI 51
>UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular
organisms|Rep: Predicted helicase - Methanosphaera
stadtmanae (strain DSM 3091)
Length = 583
Score = 72.1 bits (169), Expect = 2e-11
Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 441
+DV QAQ+GTGKTA F I +L+ ID+ QA+IL PTRELA Q+ + + L +L
Sbjct: 42 KDVTGQAQTGTGKTAAFGIPLLENIDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPK 101
Query: 442 AKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKADEM 621
GG + I+ L+ GV +++G + + R S L +ADEM
Sbjct: 102 IDVLPVYGGQPIDRQIKALQKGVQIIIG-TPGRVMDHIDRGTLSLNNIKTV-ILDEADEM 159
Query: 622 LSRGFKGQIP*CPQDV 669
L GF+ I +D+
Sbjct: 160 LDMGFREDIEYILEDI 175
>UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 990
Score = 71.7 bits (168), Expect = 2e-11
Identities = 38/82 (46%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 441
G D+I +A+SGTGKTA F I L+ ID I Q +ILAPTRE+A QI++V+ +LG +
Sbjct: 61 GFDLIVRAKSGTGKTAVFGIIALEMIDIKISSVQVIILAPTREIAIQIKEVIASLGCEIK 120
Query: 442 A-KCHACIGGTNVREDIRQLEN 504
K + IGG + D ++L N
Sbjct: 121 GLKVESFIGGVAMDIDRKKLSN 142
Score = 34.3 bits (75), Expect = 3.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 155 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
TF M L +++L G+ GF KPS IQ ++I
Sbjct: 25 TFSQMGLSQQVLNGLLNCGFHKPSPIQHKSI 55
>UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6;
Helicobacteraceae|Rep: ATP-dependent RNA helicase DeaD -
Helicobacter hepaticus
Length = 530
Score = 71.7 bits (168), Expect = 2e-11
Identities = 36/82 (43%), Positives = 54/82 (65%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+QG+D+IAQAQ+GTGKTA F+I IL ++ + ++ +ALI+ PTRELA QI + ++ LG
Sbjct: 80 LQGKDLIAQAQTGTGKTAAFAIPILNTLNRN-KDIEALIITPTRELAMQISEEILKLGRF 138
Query: 436 LNAKCHACIGGTNVREDIRQLE 501
K GG +++ LE
Sbjct: 139 GRIKTICMYGGQSIKRQCDLLE 160
>UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3;
Alteromonadales|Rep: ATP-dependent RNA helicase -
Idiomarina loihiensis
Length = 594
Score = 71.7 bits (168), Expect = 2e-11
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 429
A ++G+DV+ +AQ+GTGKTA F + L +ID S+++ Q L++ PTRELA Q+ + +
Sbjct: 41 ALLEGQDVLGEAQTGTGKTAAFGLPALAKIDASVKQTQVLVVTPTRELAIQVAEALEGFA 100
Query: 430 DHLNAKCHACI-GGTNVREDIRQLENGVMLVVG 525
+ A + GG ++ L+ G +VVG
Sbjct: 101 AKMRGVGVATVYGGAPFGPQVKALKQGTAIVVG 133
>UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2;
Treponema|Rep: ATP-dependent RNA helicase - Treponema
pallidum
Length = 649
Score = 71.7 bits (168), Expect = 2e-11
Identities = 42/123 (34%), Positives = 68/123 (55%)
Frame = +1
Query: 268 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 447
++IA+A++GTGKTA F + ++Q++ + AL+L PTRELA Q+ + +L +
Sbjct: 86 NIIAKARTGTGKTAAFGLPLIQELGSPCEHPGALVLVPTRELAAQVASELSSLRIQKIPR 145
Query: 448 CHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKADEMLS 627
H GG ++ E +R LE G ++VG + I R ++ L +ADEML+
Sbjct: 146 IHTVYGGVSIAEQLRNLEQGGEIIVGTTGRVI-DHIERGSLELSY-LRYFILDEADEMLN 203
Query: 628 RGF 636
GF
Sbjct: 204 MGF 206
>UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1;
Blastopirellula marina DSM 3645|Rep: ATP-dependent RNA
helicase - Blastopirellula marina DSM 3645
Length = 428
Score = 71.7 bits (168), Expect = 2e-11
Identities = 51/151 (33%), Positives = 79/151 (52%), Gaps = 6/151 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID--TSIRECQALILAPTRELAQQIQKVVIALG 429
++GRDV+ QA++GTGKTA F I I+++++ + R QALIL PTRELA Q++ + L
Sbjct: 39 LEGRDVLGQARTGTGKTAAFGIPIIERLEHGPNSRNPQALILTPTRELAVQVRDEIAKLT 98
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMK 609
A GG +R + +L+ +VVG I + TR + L +
Sbjct: 99 HGQRINVVAVYGGKPLRSQMEKLKRAPHIVVGTPGRVIDL-MTRRALQLEMLRTV-VLDE 156
Query: 610 ADEMLSRGFKGQIP----*CPQDVVSLMFKS 690
AD ML GF+ I CP++ +L+ +
Sbjct: 157 ADRMLDIGFRPDIEKILRRCPEERQTLLLSA 187
>UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4;
Bilateria|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 561
Score = 71.7 bits (168), Expect = 2e-11
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 2/133 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++G D++ A++GTGKT F+I ILQ++ ALIL PTRELA QI + ALG
Sbjct: 124 LEGSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKP 183
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRP--CASCQQPSNFWFLMK 609
+ KC +GG ++ R+L +VV + + P A + F+ L +
Sbjct: 184 ITLKCSVIVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDE 243
Query: 610 ADEMLSRGFKGQI 648
AD ML + Q+
Sbjct: 244 ADRMLEGQYNDQL 256
>UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellular
organisms|Rep: ATP-dependent RNA helicase - Bdellovibrio
bacteriovorus
Length = 505
Score = 71.3 bits (167), Expect = 3e-11
Identities = 38/94 (40%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVI 420
++G D++ AQ+GTGKTA FS+ ILQ + R+ + LIL PTRELA QI + +
Sbjct: 39 LEGHDLLGIAQTGTGKTAAFSLPILQNLSKHTRKIEPKSPRCLILTPTRELAIQIHENIE 98
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
A HLN K GG +R L+ GV +++
Sbjct: 99 AYSKHLNMKHAVIFGGVGQNPQVRALQGGVDILI 132
>UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
ATP-dependent RNA helicase - Syntrophomonas wolfei
subsp. wolfei (strain Goettingen)
Length = 530
Score = 71.3 bits (167), Expect = 3e-11
Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 441
G D++ QAQ+GTGKTA+F I IL ++ QAL+L PTRELA Q+ + + +L +
Sbjct: 41 GLDLMGQAQTGTGKTASFGIPILNRVIKG-EGLQALVLCPTRELAVQVTEEISSLSRRMR 99
Query: 442 AKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKADEM 621
+ A GG ++ +R L ++VG + + R S P + L +ADEM
Sbjct: 100 IQVLAIYGGQSIELQLRSLRRNPEIIVG-TPGRLMDHMNRGTISL-SPLKYVVLDEADEM 157
Query: 622 LSRGFKGQI----P*CPQDVVSLMFKSYL 696
L GF I CP++ + +F + L
Sbjct: 158 LDMGFLPDIQKILSQCPRERQTFLFSATL 186
>UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Clostridiales|Rep: DEAD/DEAH box helicase domain
protein - Desulfotomaculum reducens MI-1
Length = 438
Score = 71.3 bits (167), Expect = 3e-11
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++ +D+I Q+Q+G+GKT + + I Q+ID+S RE QALILAPT EL QI K + L +
Sbjct: 38 LKNKDIIGQSQTGSGKTLAYLLPIFQKIDSSKRETQALILAPTHELVMQIDKQIKTLSSN 97
Query: 436 --LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
L IG N+ I +L+ ++VG
Sbjct: 98 AGLTINSTVMIGEVNIVRQIEKLKEKPHIIVG 129
>UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=20;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 418
Score = 70.9 bits (166), Expect = 4e-11
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE------CQALILAPTRELAQQIQKVV 417
+QGRDV+A AQ+GTGKTA + + ++Q + RE +ALILAPTRELAQQ+ +
Sbjct: 38 LQGRDVLAAAQTGTGKTAAYGLPLIQMLSRQSREETAPKHPRALILAPTRELAQQVFDNL 97
Query: 418 IALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
H GGT++R QL GV +++
Sbjct: 98 KQYAQHTELAIVTVYGGTSIRVQQEQLAKGVDILI 132
>UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=1;
Neptuniibacter caesariensis|Rep: Putative ATP-dependent
RNA helicase - Neptuniibacter caesariensis
Length = 427
Score = 70.9 bits (166), Expect = 4e-11
Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 4/131 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTS----IRECQALILAPTRELAQQIQKVVIA 423
++G D++A+AQ+GTGKTA+F++ I++++ + R +AL+LAPTRELA Q+ +
Sbjct: 39 LRGDDLLAEAQTGTGKTASFALPIIEKLSKNPIDGYRPVRALVLAPTRELAIQVADNTLE 98
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFL 603
G L + + GG V I++L+ G ++V + + R A + + L
Sbjct: 99 YGRDLGMRVISVYGGVPVENQIKRLKRGTDILVATPGRLLDL--LRQKAISLEKLEYLVL 156
Query: 604 MKADEMLSRGF 636
+AD ML GF
Sbjct: 157 DEADRMLDLGF 167
>UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Fervidobacterium nodosum Rt17-B1|Rep: DEAD/DEAH box
helicase domain protein - Fervidobacterium nodosum
Rt17-B1
Length = 571
Score = 70.9 bits (166), Expect = 4e-11
Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLN 441
+D+IAQAQ+GTGKTA F I +L++ID + +A+I+ PTRELA QI + + +L
Sbjct: 57 KDLIAQAQTGTGKTAAFGIPLLERIDFKANKFVKAIIVTPTRELALQIFEELKSLKGTKR 116
Query: 442 AKCHACIGGTNVREDIRQLENGVMLVVG 525
K GG ++ + + LE GV +VVG
Sbjct: 117 VKITTLYGGQSLEKQFKDLEKGVDIVVG 144
Score = 33.5 bits (73), Expect = 6.5
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 152 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 253
E F+D L EE+L I G+EKP+ I Q+ ++P
Sbjct: 18 ERFEDFGLSEEILLAIQKKGYEKPTEI-QKIVLP 50
>UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein;
n=3; Clostridiaceae|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 549
Score = 70.9 bits (166), Expect = 4e-11
Identities = 35/87 (40%), Positives = 53/87 (60%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 444
RDV+AQAQ+GTGKT F + IL++++ QALI+ PTRELA QI L +
Sbjct: 41 RDVMAQAQTGTGKTLAFILPILERVNVEKPTIQALIITPTRELAIQITAETKKLAEVKGI 100
Query: 445 KCHACIGGTNVREDIRQLENGVMLVVG 525
A GG +V + +R+L+ + +++G
Sbjct: 101 NILAAYGGQDVEQQLRKLKGSIHIIIG 127
>UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Petrotoga mobilis SJ95
Length = 530
Score = 70.9 bits (166), Expect = 4e-11
Identities = 36/86 (41%), Positives = 52/86 (60%)
Frame = +1
Query: 268 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 447
+VI QAQ+GTGKTA F I +++++D + QAL+L PTRELA Q+ + +L +
Sbjct: 42 NVIGQAQTGTGKTAAFGIPLIERLDEKANDVQALVLTPTRELALQVCNEIDSLKGNKRLN 101
Query: 448 CHACIGGTNVREDIRQLENGVMLVVG 525
GG ++ IR L+ V LVVG
Sbjct: 102 LLPVYGGVSIGNQIRALKRRVDLVVG 127
>UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=6;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - alpha proteobacterium HTCC2255
Length = 531
Score = 70.5 bits (165), Expect = 5e-11
Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 5/96 (5%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKV 414
A + +D++ AQ+GTGKTA F++ ++QQ I R +A+IL+PTRELA QI +
Sbjct: 136 AVLNSKDLVGLAQTGTGKTAAFALPLIQQLLMNPIAIKGRSARAIILSPTRELALQIHEA 195
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
++ G L IGG +R+ +R L GV ++V
Sbjct: 196 FVSFGKRLPLNFTHAIGGAPIRKQMRDLSKGVDILV 231
>UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Solibacter usitatus Ellin6076|Rep: DEAD/DEAH box
helicase domain protein - Solibacter usitatus (strain
Ellin6076)
Length = 422
Score = 70.5 bits (165), Expect = 5e-11
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALG 429
+ G+D++A AQ+GTGKT F + +Q + T R+ +ALIL PTRELA QI + ++ +
Sbjct: 37 LAGKDIVATAQTGTGKTLAFLLPTIQLLSTEPRQPGVRALILTPTRELALQINEALLQIA 96
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
+ +GG N R +R + G +VV
Sbjct: 97 RGTGIRAAVAVGGLNERSQLRDIRGGANIVV 127
>UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2;
Bacteroidales|Rep: Putative uncharacterized protein -
Bacteroides capillosus ATCC 29799
Length = 636
Score = 70.5 bits (165), Expect = 5e-11
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSI---RECQALILAPTRELAQQIQKVVIAL 426
+ GRDV+ AQ+GTGKT F+ ILQ++ I R ++LIL PTRELA QIQ+ A
Sbjct: 36 LAGRDVLGCAQTGTGKTCAFAAPILQRLGGDIPAGRPIRSLILTPTRELALQIQESFEAY 95
Query: 427 GDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
G HL + GG + + +L+ GV ++V
Sbjct: 96 GKHLPLRSAVIFGGVGQQPQVDKLKKGVDILV 127
Score = 36.3 bits (80), Expect = 0.93
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +2
Query: 155 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPS 256
TF ++ L + +L+ + G+EKPS IQ++AI P+
Sbjct: 2 TFRELGLTQSILKALAELGYEKPSPIQEKAIPPA 35
>UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific for
23S rRNA; n=1; Lentisphaera araneosa HTCC2155|Rep:
ATP-dependent RNA helicase, specific for 23S rRNA -
Lentisphaera araneosa HTCC2155
Length = 462
Score = 70.5 bits (165), Expect = 5e-11
Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 429
A + G+D+IAQA++GTGKTA F + +L ++ Q LIL PTREL +Q+ K + L
Sbjct: 37 AILDGKDLIAQAKTGTGKTAAFGLGVLSKLVLDDYRIQVLILCPTRELCEQVSKAIRDLA 96
Query: 430 DHL-NAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLM 606
+ N K + GG R ++ + +G +VVG + I + S L
Sbjct: 97 RMMPNIKLLSLGGGMPFRPQMKSVAHGAHIVVG-TPGRILKHLNKSSLSLDHVRTL-VLD 154
Query: 607 KADEMLSRGFKGQI 648
+AD ML GF+ +I
Sbjct: 155 EADRMLDMGFQDEI 168
>UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain; n=18;
Pseudomonadaceae|Rep: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain - Azotobacter
vinelandii AvOP
Length = 575
Score = 70.1 bits (164), Expect = 6e-11
Identities = 49/129 (37%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ G D+I QAQ+GTGKTA F++ +L +ID + RE Q LILAPTRELA Q+
Sbjct: 58 LAGHDMIGQAQTGTGKTAAFALPMLSRIDPARREPQLLILAPTRELALQVATAFETYASQ 117
Query: 436 L-NAKCHACIGGTNVREDIRQLENGV-MLVVGHSRSCIWI**TRPCASCQQPSNFWFLMK 609
L A GG + ++ L G +LV R C + R L +
Sbjct: 118 LPGVGVVAVYGGAPMGPQLKALRQGAQILVATPGRLCDHL---RRDEQLLSTVKHLVLDE 174
Query: 610 ADEMLSRGF 636
ADEML GF
Sbjct: 175 ADEMLKLGF 183
>UniRef50_P75172 Cluster: Probable ATP-dependent RNA helicase MG425
homolog; n=4; Mycoplasma|Rep: Probable ATP-dependent RNA
helicase MG425 homolog - Mycoplasma pneumoniae
Length = 450
Score = 70.1 bits (164), Expect = 6e-11
Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Frame = +1
Query: 253 FIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIAL 426
F+Q +++I + +GTGKTA F I +++ + S Q L++APTRELA+QI+ I
Sbjct: 37 FLQHQNLIVHSPTGTGKTAVFGIPVIETLLKKPSKGTTQTLVVAPTRELAEQIKTTFINF 96
Query: 427 GDHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
H + K + IGG + + ++QLEN +VVG
Sbjct: 97 AKHTHLKVVSLIGGIPIWQQLKQLENQPEIVVG 129
>UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5;
Tetrapoda|Rep: DEAD-box corepressor DP103 beta - Mus
musculus (Mouse)
Length = 505
Score = 69.7 bits (163), Expect = 8e-11
Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 441
G D+I QA+SGTGKT FS L + Q LILAPTRE+A QI V+ A+G +
Sbjct: 100 GLDLIVQAKSGTGKTCVFSTIALDSLILENYSTQILILAPTREIAVQIHSVITAIGIKME 159
Query: 442 A-KCHACIGGTNVREDIRQLE 501
+CH IGGT + +D +L+
Sbjct: 160 GLECHVFIGGTPLSQDKTRLK 180
>UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Psychroflexus torquis ATCC 700755|Rep: DEAD/DEAH box
helicase-like protein - Psychroflexus torquis ATCC
700755
Length = 255
Score = 69.7 bits (163), Expect = 8e-11
Identities = 37/89 (41%), Positives = 54/89 (60%)
Frame = +1
Query: 259 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 438
QG DVI QA++G+GKTA F + IL++ S + QAL+LAPTRELA Q+ + L +
Sbjct: 41 QGTDVIGQARTGSGKTAAFGLPILERCQPS-GKLQALVLAPTRELANQVAQEFELLQGNA 99
Query: 439 NAKCHACIGGTNVREDIRQLENGVMLVVG 525
GGT++ + + L GV ++VG
Sbjct: 100 GLSIVTVYGGTDLEKQAKTLAKGVDIIVG 128
>UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1;
Oceanobacter sp. RED65|Rep: ATP-dependent RNA helicase -
Oceanobacter sp. RED65
Length = 475
Score = 69.7 bits (163), Expect = 8e-11
Identities = 42/95 (44%), Positives = 57/95 (60%), Gaps = 6/95 (6%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTS------IRECQALILAPTRELAQQIQKVV 417
+ GRD+I +AQ+GTGKTA F I++LQ++ T E +ALILAPTRELA QI K
Sbjct: 133 LAGRDIIGKAQTGTGKTAAFLITVLQKLLTVKPEERFASEPRALILAPTRELAMQIAKDA 192
Query: 418 IALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
L + + +GG + + QLEN V+ VV
Sbjct: 193 DGLSKYADLNIVTVLGGVDYDKQKEQLENEVVDVV 227
>UniRef50_Q188H5 Cluster: Putative ATP-dependent RNA helicase; n=2;
Clostridium difficile|Rep: Putative ATP-dependent RNA
helicase - Clostridium difficile (strain 630)
Length = 381
Score = 69.7 bits (163), Expect = 8e-11
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI--QKVVIALG 429
IQ +D++ +Q+GTGKT + + I ++IDTS RE QALILAPT EL QI Q ++A
Sbjct: 37 IQNKDLLINSQTGTGKTLAYLLPIFEKIDTSKRETQALILAPTHELVMQITNQVELLAKN 96
Query: 430 DHLNAKCHACIGGTNVREDIRQLE 501
L+ A IG N+++ I+ ++
Sbjct: 97 AELSVTSLALIGEVNIQKQIKNIK 120
>UniRef50_Q0G0P8 Cluster: Superfamily II DNA and RNA helicase; n=2;
Aurantimonadaceae|Rep: Superfamily II DNA and RNA
helicase - Fulvimarina pelagi HTCC2506
Length = 457
Score = 69.7 bits (163), Expect = 8e-11
Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 9/154 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDT-----SIRECQALILAPTRELAQQIQKVVI 420
+ GRD++ AQ+GTGKTA F++ +L + T + R +ALIL+PTRELA QI + +
Sbjct: 39 LAGRDMLGIAQTGTGKTAAFALPLLHHLMTVGGKPTTRTTKALILSPTRELAVQIAESIA 98
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWF 600
L + GG +VR I+ L GV ++V + + R A + +
Sbjct: 99 DLSEGTPISHCVVFGGVSVRPQIQALARGVDILVATPGRLLDLMEQR--AIDLRETRHLI 156
Query: 601 LMKADEMLSRGFKGQ----IP*CPQDVVSLMFKS 690
L +AD ML GF + CP D S+MF +
Sbjct: 157 LDEADRMLDMGFVRDVMKIVGKCPDDRQSMMFSA 190
>UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5;
Viridiplantae|Rep: DEAD box protein P68 - Pisum sativum
(Garden pea)
Length = 622
Score = 69.7 bits (163), Expect = 8e-11
Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 6/137 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQ--IDTSIRECQ---ALILAPTRELAQQIQKVVI 420
+ GRD++ A++G+GKTA F+I +LQ + IR AL+LAPTRELAQQI+K V
Sbjct: 153 LSGRDLLGCAETGSGKTAAFTIPMLQHCLVQPPIRRGDGPLALVLAPTRELAQQIEKEVQ 212
Query: 421 ALGDHLNA-KCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFW 597
A L + K +GGTN+ + +L GV + V +I + + ++
Sbjct: 213 AFSRSLESLKNCIVVGGTNIEKQRSELRAGVEIAVATPGR--FIDHLQQGNTSLSRISYV 270
Query: 598 FLMKADEMLSRGFKGQI 648
L +AD ML GF+ QI
Sbjct: 271 VLDEADRMLDMGFEPQI 287
>UniRef50_Q8MZI3 Cluster: GH10652p; n=2; Drosophila
melanogaster|Rep: GH10652p - Drosophila melanogaster
(Fruit fly)
Length = 818
Score = 69.7 bits (163), Expect = 8e-11
Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 5/136 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVI 420
+ GRD++ AQ+G+GKT + + + I+ R + AL+LAPTRELAQQIQ+V I
Sbjct: 192 MSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAI 251
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWF 600
G + + + GG + R LE GV +V+ I R S ++ +
Sbjct: 252 EFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGRLIDF-LERGTTSLKR-CTYLV 309
Query: 601 LMKADEMLSRGFKGQI 648
L +AD ML GF+ QI
Sbjct: 310 LDEADRMLDMGFEPQI 325
>UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma
gondii|Rep: DEAD box RNA helicase - Toxoplasma gondii
Length = 479
Score = 69.7 bits (163), Expect = 8e-11
Identities = 37/90 (41%), Positives = 53/90 (58%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+QGRD+IA A++G+GKTA F + ILQ++ + ALILAPTREL QI + ++A+G
Sbjct: 86 LQGRDIIALAETGSGKTAAFGLPILQRLLQRTQRFYALILAPTRELCLQISQQILAMGGT 145
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
L +GG + L +VVG
Sbjct: 146 LGVTVVTLVGGLDHNTQAIALAKKPHVVVG 175
>UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog;
n=31; Bacteria|Rep: Cold-shock DEAD box protein A
homolog - Mycobacterium tuberculosis
Length = 563
Score = 69.7 bits (163), Expect = 8e-11
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 429
A + G DV+ AQ+GTGKTA F+I +L +ID + + QAL+L PTRELA Q+ + G
Sbjct: 46 ALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYG 105
Query: 430 DHLN-AKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLM 606
+L+ GG++ + L G +VVG I +F L
Sbjct: 106 AYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRMIDH--LERATLDLSRVDFLVLD 163
Query: 607 KADEMLSRGFKGQI 648
+ADEML+ GF +
Sbjct: 164 EADEMLTMGFADDV 177
>UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=24; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX20 - Homo sapiens (Human)
Length = 824
Score = 69.7 bits (163), Expect = 8e-11
Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 441
G D+I QA+SGTGKT FS L + Q LILAPTRE+A QI V+ A+G +
Sbjct: 99 GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKME 158
Query: 442 A-KCHACIGGTNVREDIRQLE 501
+CH IGGT + +D +L+
Sbjct: 159 GLECHVFIGGTPLSQDKTRLK 179
>UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family
protein; n=1; Tetrahymena thermophila SB210|Rep:
DEAD/DEAH box helicase family protein - Tetrahymena
thermophila SB210
Length = 476
Score = 69.3 bits (162), Expect = 1e-10
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
I G+DV+ QA++GTGKTA F +S+L Q+ + L+L TRELA QI+ LG
Sbjct: 73 IHGKDVLCQAKAGTGKTAVFVLSVLNQLPDDAKPFSCLVLCHTRELAFQIKNEFKRLGKF 132
Query: 436 LNAKCHACIGGTNVREDIRQLE-NGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKA 612
N K A GG DI L+ ++V C+ + +P Q ++ + +
Sbjct: 133 TNFKVKAVYGGVEESVDIHTLKTKKPHILVATPGRCLSLIKAKPSVIETQNIEYFIIDEC 192
Query: 613 DEMLS 627
D +LS
Sbjct: 193 DRVLS 197
Score = 36.7 bits (81), Expect = 0.70
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +2
Query: 155 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
+F+D +LK++LLR + GFE+PS +Q + I
Sbjct: 39 SFNDFSLKQDLLRSVKEAGFERPSEVQHQCI 69
>UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 1117
Score = 69.3 bits (162), Expect = 1e-10
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 444
+D+I QA+SGTGKT FS+ L+ ID + Q LILAPTRE+A QIQ + A+G +
Sbjct: 4 QDLIVQAKSGTGKTCVFSVIALEGIDLTNPSTQVLILAPTREIAVQIQDTIRAIGCEMEG 63
Query: 445 -KCHACIGGTNVREDIRQLE 501
+ H IGGT D ++L+
Sbjct: 64 LRSHVFIGGTLFGPDRQKLK 83
>UniRef50_Q89IS2 Cluster: Cold-shock dead-box protein A; n=28;
Alphaproteobacteria|Rep: Cold-shock dead-box protein A -
Bradyrhizobium japonicum
Length = 650
Score = 69.3 bits (162), Expect = 1e-10
Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 7/133 (5%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVVIA 423
GRD++ AQ+G+GKT + +++ + + I + ALI+APTRELA Q+Q+ +
Sbjct: 36 GRDLLVSAQTGSGKTLAYGLALAKDLLDGIERFERAGAPLALIVAPTRELALQVQRELAW 95
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLENGVMLVVG-HSRSCIWI**TRPCASCQQPSNFWF 600
L +H + + +C+GG + R + R+L G +VVG R C + R S
Sbjct: 96 LYEHADGRVVSCVGGMDPRREQRELAAGAHIVVGTPGRLCDHLRRGRLDIS---ELKAVV 152
Query: 601 LMKADEMLSRGFK 639
L +ADEML+ GF+
Sbjct: 153 LDEADEMLNLGFR 165
>UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=25; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 450
Score = 69.3 bits (162), Expect = 1e-10
Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALGD 432
+ G+D+I QA++GTGKT F + IL++ID + QALI+APTRELA QI ++ L
Sbjct: 40 LSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQ 99
Query: 433 HLNAKCHACIGGTNVREDIRQLENGVMLVV 522
+ A GG +V + +R+L+ +VV
Sbjct: 100 REDINVLAIYGGQDVAQQLRKLKGNTHIVV 129
>UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10;
Proteobacteria|Rep: DEAD/DEAH box helicase -
Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 481
Score = 69.3 bits (162), Expect = 1e-10
Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKV 414
A + G+DV+A AQ+GTGKTA F++ +LQ++ S + L+L PTRELA+Q+ +
Sbjct: 34 AVLGGKDVMAGAQTGTGKTAGFALPLLQRLVQHGPAVSSNRARVLVLVPTRELAEQVLQS 93
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNF 594
IA G L+ + A GG ++ + +L GV ++V + + R A
Sbjct: 94 FIAYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVLVATPGRLLDL--NRQNAVQFDQVQT 151
Query: 595 WFLMKADEMLSRGFKGQI 648
L +AD ML GF ++
Sbjct: 152 LVLDEADRMLDLGFAREL 169
>UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1;
Aquifex aeolicus|Rep: ATP-dependent RNA helicase DeaD -
Aquifex aeolicus
Length = 293
Score = 69.3 bits (162), Expect = 1e-10
Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+QGRD + QA++GTGKTA F + IL + + ALILAPTRELA QI+ +
Sbjct: 7 LQGRDCLIQAKTGTGKTAAFGLPILNSLKEGEK---ALILAPTRELALQIRDNFRDFARY 63
Query: 436 LNAKCHACIGGTNVREDIRQLENG-VMLVVG 525
LN + A GGT V D++ L G V +V+G
Sbjct: 64 LNVRTFAFYGGTKVFGDLKVLRGGKVDVVIG 94
>UniRef50_A6TX49 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Firmicutes|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 387
Score = 69.3 bits (162), Expect = 1e-10
Identities = 33/89 (37%), Positives = 52/89 (58%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++G+D+IA++ +GTGKT + I IL +ID + QA+ILAP+ ELA QI + +
Sbjct: 45 LEGKDLIAESPTGTGKTLAYLIPILHRIDPESKAVQAVILAPSHELAMQIHQTIEKWTKD 104
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVV 522
N IGG N++ I L+ ++V
Sbjct: 105 NNISSEPLIGGANIKRQIENLKKRPQIIV 133
>UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6;
Bacteroidetes|Rep: ATP-dependent RNA helicase -
Polaribacter irgensii 23-P
Length = 447
Score = 69.3 bits (162), Expect = 1e-10
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +1
Query: 268 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 447
D++A A++GTGKTA F + +LQ ID + QA+ILAPTREL QQI +I+ +H +
Sbjct: 43 DIVALAKTGTGKTAAFGLPLLQLIDVNNDAIQAIILAPTRELGQQIAANLISFAEHTSQV 102
Query: 448 CHACI-GGTNVREDIRQLENGVMLVV 522
A + GG ++ I +L+ ++V
Sbjct: 103 SIATLCGGIPIKPQIERLKEATHIIV 128
>UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Reinekea sp. MED297|Rep: DEAD/DEAH box helicase-like
protein - Reinekea sp. MED297
Length = 579
Score = 69.3 bits (162), Expect = 1e-10
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ G DV+ AQ+GTGKTA FS+ +L +IDT+ + QAL+L PTRELA Q+ +
Sbjct: 40 LDGNDVLGLAQTGTGKTAAFSLPLLSRIDTTKNKPQALVLCPTRELAIQVAEAFQTYARG 99
Query: 436 L-NAKCHACIGGTNVREDIRQLENGVMLVVG 525
+ N GG ++R +R L+ ++VG
Sbjct: 100 VDNFHVLPIYGGADMRNQLRALKQNPQVIVG 130
>UniRef50_A0VLH7 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Rhodobacteraceae|Rep: DEAD/DEAH box helicase domain
protein - Dinoroseobacter shibae DFL 12
Length = 508
Score = 69.3 bits (162), Expect = 1e-10
Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVI 420
+ GRDV+ AQ+GTGKTA F + +L + + R C+ LILAPTREL QI + +
Sbjct: 106 LNGRDVLGIAQTGTGKTAAFGLPLLDALMKAGTKPAPRTCRGLILAPTRELVSQICESLR 165
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWF 600
A + + K +GG + I++ E G L+V I + + A + F
Sbjct: 166 AFTEGSHLKLQVIVGGVAIGPQIKRAERGADLIVATPGRLIDLLDRK--ALRLSETRFLV 223
Query: 601 LMKADEMLSRGF 636
L +AD+ML GF
Sbjct: 224 LDEADQMLDLGF 235
>UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein;
n=3; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 478
Score = 69.3 bits (162), Expect = 1e-10
Identities = 35/58 (60%), Positives = 41/58 (70%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 438
R VIAQAQSGTGKT FSI +L +ID S + QAL+LAPTRELA QI V +G +
Sbjct: 131 RHVIAQAQSGTGKTGAFSIGVLSKIDVSQKTTQALVLAPTRELATQIFNVFKEIGSRI 188
Score = 46.4 bits (105), Expect = 9e-04
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 89 SYDG-PPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
SY+ P D +W V+ FD M+L LL+G+Y+YGF PS IQ AI
Sbjct: 69 SYEAMTPAQDDPNFIPNWTTRVDDFDQMDLPPALLQGVYSYGFRAPSEIQAIAI 122
>UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3;
Methanosarcinaceae|Rep: DEAD-box RNA helicase -
Methanococcoides burtonii
Length = 522
Score = 69.3 bits (162), Expect = 1e-10
Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 4/170 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++G+D+I A +G+GKT F I+Q+I+ +AL+L PTRELA+Q+Q + H
Sbjct: 37 LEGKDIIGGAATGSGKTLAFGCGIIQKIEKG-NGIRALVLTPTRELAEQVQNSLKEFSRH 95
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKAD 615
+ GG + IRQLE ++V R I R L +AD
Sbjct: 96 KQLRVAPIYGGVAINPQIRQLERADVVVATPGRLLDHI--ERGTIDLGD-VEILVLDEAD 152
Query: 616 EMLSRGF----KGQIP*CPQDVVSLMFKSYLLSGLPCPDGWYLEVTSEAF 753
ML GF + I CP D ++MF + + + Y+ S+ F
Sbjct: 153 RMLDMGFIDDVEEIIDECPSDRQTMMFSATVSKDIQYLSSKYMNNPSKVF 202
>UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2;
Synechococcus|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 458
Score = 68.9 bits (161), Expect = 1e-10
Identities = 33/93 (35%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIR----ECQALILAPTRELAQQIQKVVIA 423
+QG+D++A AQ+GTGKTA F + I++ + + + +L+L PTRELA Q++ A
Sbjct: 59 LQGKDIMASAQTGTGKTAAFILPIIELLRAEDKPKRYQVHSLVLTPTRELAAQVEASAKA 118
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
+L + A GG ++R +++L+ GV ++V
Sbjct: 119 YTKYLALRSDAVFGGVSIRPQVKRLQGGVDILV 151
>UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein;
n=8; Bacteria|Rep: DEAD/DEAH box helicase domain protein
- Dehalococcoides sp. BAV1
Length = 561
Score = 68.9 bits (161), Expect = 1e-10
Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIR-ECQALILAPTRELAQQIQKVVIALGDHL 438
G DVI AQ+GTGKTA +++ I+Q++ ++ R + L++APTRELA QI +LG
Sbjct: 38 GHDVIGLAQTGTGKTAAYALPIIQKMLSTPRGRVRTLVIAPTRELACQISDSFRSLGQRA 97
Query: 439 NAKCHACIGGTNVREDIRQLENGVMLVV 522
+ + GG N+ + IR+L +GV +VV
Sbjct: 98 RIRECSIYGGVNMDQQIRRLRSGVDVVV 125
>UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6;
Ascomycota|Rep: ATP-dependent rRNA helicase RRP3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 501
Score = 68.9 bits (161), Expect = 1e-10
Identities = 34/81 (41%), Positives = 50/81 (61%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++G D+I AQ+G+GKTA F+I IL ++ A ILAPTRELAQQI++ +LG
Sbjct: 116 LEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSL 175
Query: 436 LNAKCHACIGGTNVREDIRQL 498
+ + +GG N+ + R L
Sbjct: 176 MGVRSTCIVGGMNMMDQARDL 196
Score = 35.5 bits (78), Expect = 1.6
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +2
Query: 128 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPS 256
+T+ D+ E+F ++NL EL++ + KP+ IQ +AI P+
Sbjct: 73 NTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPA 115
>UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=9; Euteleostomi|Rep: Probable ATP-dependent RNA
helicase DDX20 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 761
Score = 68.9 bits (161), Expect = 1e-10
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 441
G D+I QA+SGTGKT F+ L + Q L+LAPTRE+A QI VV+A+G +
Sbjct: 63 GLDLIVQAKSGTGKTCVFTTIALDSLILENATTQVLVLAPTREIAVQIHAVVMAIGSAME 122
Query: 442 A-KCHACIGGTNVREDIRQLE 501
+CH IGG + +D + L+
Sbjct: 123 GLECHVFIGGRPISQDKQHLK 143
>UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 684
Score = 68.5 bits (160), Expect = 2e-10
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIAL 426
A ++G D+IA A++G+GKTA + + I+ +++T E ++LI+ PTRELA Q KV L
Sbjct: 46 AILRGNDIIAMARTGSGKTAAYLVPIINRLETHSTEGVRSLIICPTRELALQTIKVFNEL 105
Query: 427 GDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
G N K IGG+ + + L +G ++V
Sbjct: 106 GKLTNLKASLIIGGSKLSDQFDNLSSGPDIIV 137
>UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE;
n=3; Nitrosomonadaceae|Rep: RhlE; ATP-dependent RNA
helicase RhlE - Nitrosomonas europaea
Length = 498
Score = 68.5 bits (160), Expect = 2e-10
Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQI----DTSIRECQ----ALILAPTRELAQQI 405
+ + G+DV+A AQ+GTGKTA F++ +L ++ +TS+ + ALI+APTRELA QI
Sbjct: 38 SILAGKDVMASAQTGTGKTAGFTLPLLYRLQAYANTSVSPARHPVRALIMAPTRELAMQI 97
Query: 406 QKVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQP 585
+ V G +L + GG N+ I L+ GV ++V + + A
Sbjct: 98 DESVRKYGKYLALRTAVVFGGINIEPQIAALQAGVEILVATPGRLLDL--VEQKAVNFSK 155
Query: 586 SNFWFLMKADEMLSRGF 636
+ L +AD ML GF
Sbjct: 156 TEILVLDEADRMLDMGF 172
>UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative ATP-dependent RNA helicase - Protochlamydia
amoebophila (strain UWE25)
Length = 407
Score = 68.5 bits (160), Expect = 2e-10
Identities = 44/124 (35%), Positives = 67/124 (54%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 444
+D+IA +Q+G+GKTAT +I I +++T + + QALI+ PTRELA Q +G +
Sbjct: 53 QDLIALSQTGSGKTATCAIPICNRVNTELTDIQALIIVPTRELALQYATETQKIGKYKGV 112
Query: 445 KCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKADEML 624
K A GG + +L++GV ++V I +R + L +ADEML
Sbjct: 113 KAFAIFGGEDSALQQSKLKHGVQVLVATPGRLIDFIYSRQIDLSHVET--LILDEADEML 170
Query: 625 SRGF 636
S GF
Sbjct: 171 SMGF 174
>UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein;
n=48; root|Rep: DEAD/DEAH box helicase domain protein -
Marinomonas sp. MWYL1
Length = 463
Score = 68.5 bits (160), Expect = 2e-10
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVV 417
A ++G+DV+A AQ+GTGKTA F++ +L+ + + + +AL+L PTRELA Q+ + V
Sbjct: 38 AILEGQDVMAAAQTGTGKTAGFTLPLLEILSKGENAQSNQVRALVLTPTRELAAQVAESV 97
Query: 418 IALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
G HL+ K GG + + L G +++
Sbjct: 98 KNYGQHLSLKSTVVFGGVKINPQMMALRRGADILI 132
>UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=4; Flavobacteriaceae|Rep:
ATP-dependent RNA helicase, DEAD/DEAH box family protein
- Polaribacter dokdonensis MED152
Length = 373
Score = 68.5 bits (160), Expect = 2e-10
Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Frame = +1
Query: 268 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 447
D I AQ+GTGKTA F + +L ID + QALIL+PTREL QQI+K + +++ +
Sbjct: 42 DFIGLAQTGTGKTAAFGLPVLHHIDANSDHIQALILSPTRELVQQIKKQLFKFTKYVDDR 101
Query: 448 --CHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKADEM 621
A GG + + L+ +V+ I + R L +ADEM
Sbjct: 102 IFLEAVFGGEKIDRQMNNLKRTTHIVIATPGRLIDL-IERGAVDISHVKTV-ILDEADEM 159
Query: 622 LSRGFK 639
LS GFK
Sbjct: 160 LSMGFK 165
>UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 508
Score = 68.5 bits (160), Expect = 2e-10
Identities = 34/71 (47%), Positives = 47/71 (66%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++GRD+IA A++G+GKTA+F+I IL Q+ A+IL PTRELA QI + A+G
Sbjct: 39 LKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQIGEQFNAIGAP 98
Query: 436 LNAKCHACIGG 468
+N C IGG
Sbjct: 99 MNVNCSVVIGG 109
>UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhlE;
n=122; cellular organisms|Rep: Putative ATP-dependent
RNA helicase rhlE - Escherichia coli (strain K12)
Length = 454
Score = 68.5 bits (160), Expect = 2e-10
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 6/97 (6%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDT------SIRECQALILAPTRELAQQIQK 411
A ++GRD++A AQ+GTGKTA F++ +LQ + T R +ALIL PTRELA QI +
Sbjct: 34 AVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGE 93
Query: 412 VVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
V +LN + GG ++ + +L GV ++V
Sbjct: 94 NVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLV 130
>UniRef50_UPI0000DAE40A Cluster: hypothetical protein
Rgryl_01000266; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000266 - Rickettsiella
grylli
Length = 433
Score = 68.1 bits (159), Expect = 2e-10
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 2/135 (1%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIAL 426
A +QGRDV+ AQ+GTGKTA +++ +LQQ+ + + +ALIL+PTR+LA QI +
Sbjct: 46 AILQGRDVVGLAQTGTGKTAAYALPLLQQLTEGPPGQLRALILSPTRDLADQICVAMNHF 105
Query: 427 GDHLNAKCHACIGG-TNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFL 603
G + +C GG N + L GV ++V + + + QQ + L
Sbjct: 106 GRQTHLRCATIYGGKINYTRQYQLLTGGVDIIVACPGRLLDLLQGKKNNFLQQVKHL-VL 164
Query: 604 MKADEMLSRGFKGQI 648
+AD + GF+ I
Sbjct: 165 DEADHLFDHGFRDAI 179
>UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6;
Xanthomonas|Rep: ATP-dependent RNA helicase -
Xanthomonas oryzae pv. oryzae
Length = 482
Score = 68.1 bits (159), Expect = 2e-10
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++G DVIAQA +G+GKTA F + +LQ++D ++ QAL+L PTRELA Q+ K + L
Sbjct: 61 LRGLDVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQVGKQLRKLATG 120
Query: 436 L-NAKCHACIGGTNVREDIRQLE 501
+ N K GG + + LE
Sbjct: 121 IPNMKLVVLTGGMPLGPQLASLE 143
>UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicase,
C-terminal:DEAD/DEAH box helicase, N-terminal; n=1;
Exiguobacterium sibiricum 255-15|Rep: IMP
dehydrogenase/GMP reductase:Helicase,
C-terminal:DEAD/DEAH box helicase, N-terminal -
Exiguobacterium sibiricum 255-15
Length = 450
Score = 68.1 bits (159), Expect = 2e-10
Identities = 42/137 (30%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI----QKVV 417
A ++GRD+I Q+Q+GTGKT +F + I+Q ++ ++E QA+I+APTRELA QI + ++
Sbjct: 35 AALKGRDIIGQSQTGTGKTLSFLLPIVQNVNPELQEMQAIIVAPTRELAWQIHEELKSIL 94
Query: 418 IALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFW 597
+ D++ K GG + I +++ +V+G + + + A +
Sbjct: 95 VKQPDYI--KTSLITGGMDRERQIGRVKVSPQIVIGTPGRILDL--FKEQALKPHFVKHY 150
Query: 598 FLMKADEMLSRGFKGQI 648
+ +AD+ML GF ++
Sbjct: 151 IIDEADQMLDMGFLPEV 167
>UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3;
Clostridium difficile|Rep: ATP-dependent RNA helicase -
Clostridium difficile (strain 630)
Length = 497
Score = 68.1 bits (159), Expect = 2e-10
Identities = 29/89 (32%), Positives = 58/89 (65%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++G++++ ++++G+GKTA+F+I + + I+ QALI+ PTRELA Q++ + +G
Sbjct: 38 LKGQNLVVRSKTGSGKTASFAIPLCENINVDYNNIQALIVVPTRELALQVKDEISDIGRL 97
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVV 522
+C A G ++++ I +L+ V +VV
Sbjct: 98 KKVRCSAIFGKQSIKDQIAELKQRVHIVV 126
>UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=16;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013)
Length = 433
Score = 68.1 bits (159), Expect = 2e-10
Identities = 47/138 (34%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKV 414
A +G DV+A AQ+GTGKTA F++ ILQ++ Q ALIL PTRELA Q+
Sbjct: 34 AIRRGEDVLASAQTGTGKTAAFALPILQKMHERPMTVQHSNARALILTPTRELAAQVADN 93
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNF 594
+ A H+N GG + ++L+ G ++V + C F
Sbjct: 94 ISAYSKHMNISVLTIYGGMKMATQAQKLKQGADIIVATPGRLLEH--IVACNLSLSNVEF 151
Query: 595 WFLMKADEMLSRGFKGQI 648
L +AD ML GF I
Sbjct: 152 LVLDEADRMLDMGFSTDI 169
>UniRef50_Q0C4R1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=1; Hyphomonas neptunium ATCC 15444|Rep:
ATP-dependent RNA helicase, DEAD/DEAH box family -
Hyphomonas neptunium (strain ATCC 15444)
Length = 708
Score = 68.1 bits (159), Expect = 2e-10
Identities = 36/97 (37%), Positives = 60/97 (61%), Gaps = 7/97 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI----DTSIRECQA---LILAPTRELAQQIQKV 414
++GRD++ A++G+GKT F ++I ++ DT + LI+APTRELA Q+ +
Sbjct: 35 LEGRDLLVSARTGSGKTVAFGLAIANELLGGEDTFLIRAATPLGLIIAPTRELALQVARE 94
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
+ L + NA+ C+GG ++R++ R LE G +VVG
Sbjct: 95 LRWLYANTNAEIATCVGGMDMRDERRALERGAHIVVG 131
>UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1;
uncultured methanogenic archaeon RC-I|Rep: ATP-dependent
RNA helicase - Uncultured methanogenic archaeon RC-I
Length = 497
Score = 68.1 bits (159), Expect = 2e-10
Identities = 33/90 (36%), Positives = 55/90 (61%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++G+D+I QA++GTGKTA F I +++ I + + Q L++ PTRELA Q+ + + +G
Sbjct: 37 MEGKDLIGQARTGTGKTAAFGIPMVEAIRPTSKGVQGLVVVPTRELAVQVAEELTRIGKV 96
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
+ A GG + R ++ LE +VVG
Sbjct: 97 RGIRSVAIYGGQDFRSQVKALEELPHIVVG 126
>UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n=1;
unknown|Rep: UPI00015BD198 UniRef100 entry - unknown
Length = 364
Score = 67.7 bits (158), Expect = 3e-10
Identities = 31/91 (34%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++G D++ QA +GTGKT F+I I++++ + +AL+L PTRELA Q+++ + L +
Sbjct: 35 LEGYDILGQAATGTGKTGAFAIPIVEKLQKGKPDVKALVLTPTRELAIQVKEQIYMLTKY 94
Query: 436 LNAKCHACIGGTNVREDIRQLEN-GVMLVVG 525
+ GGT+V++++ L+N V +++G
Sbjct: 95 KRLSSYVFYGGTSVKQNLDILQNKNVDILIG 125
>UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=6; Vibrio|Rep: ATP-dependent RNA helicase,
DEAD box family - Vibrio parahaemolyticus
Length = 421
Score = 67.7 bits (158), Expect = 3e-10
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALG 429
++G+D++A AQ+GTGKTA F + I+Q + R ALIL PTRELAQQ+ +
Sbjct: 42 LEGKDLLAAAQTGTGKTAAFGLPIIQAVQQKKRNGTPHALILVPTRELAQQVFDNLTQYA 101
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
+H + + GGT++ +LE G +++
Sbjct: 102 EHTDLRIVCVYGGTSIGVQKNKLEEGADILI 132
>UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14;
Bacteria|Rep: ATP-dependent RNA helicase DeaD -
Bacteroides fragilis
Length = 427
Score = 67.7 bits (158), Expect = 3e-10
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRE-CQALILAPTRELAQQIQKVVIALG 429
+QG+D++ AQ+GTGKTA FSI ILQ++ T R+ +AL+L PTRELA QI + A G
Sbjct: 36 LQGKDLLGCAQTGTGKTAAFSIPILQKLYKTDHRKGIKALVLTPTRELAIQIGESFEAYG 95
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMK 609
+ K GG + L +G+ ++V + + ++ S +F+ L +
Sbjct: 96 RYTGLKHAVIFGGVGQKPQTDALRSGIQILVATPGRLLDL-ISQGFISLSS-LDFFVLDE 153
Query: 610 ADEMLSRGF 636
AD ML GF
Sbjct: 154 ADRMLDMGF 162
>UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL
protein - Bacillus subtilis
Length = 376
Score = 67.7 bits (158), Expect = 3e-10
Identities = 32/90 (35%), Positives = 57/90 (63%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ G+DVIA++ +GTGKT +++ +L++I + QA+ILAP+REL QI +V+
Sbjct: 39 MDGKDVIAESPTGTGKTLAYALPVLERIKPEQKHPQAVILAPSRELVMQIFQVIQDWKAG 98
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
+ + IGG NV++ + +L+ ++VG
Sbjct: 99 SELRAASLIGGANVKKQVEKLKKHPHIIVG 128
>UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Desulfuromonadales|Rep: DEAD/DEAH box helicase
domain protein - Geobacter bemidjiensis Bem
Length = 482
Score = 67.7 bits (158), Expect = 3e-10
Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIR-----ECQALILAPTRELAQQIQKVVI 420
+ G+DV QAQ+GTGKTATF ISI ++ + + +ALILAPTREL QI+K
Sbjct: 36 LTGKDVAGQAQTGTGKTATFLISIFTKLLSQAKTGGEHHPRALILAPTRELVVQIEKDAQ 95
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
ALG + A GG + + L+ G +V+G
Sbjct: 96 ALGKYTGFNIQAIYGGVDYMKQRDALKAGADIVIG 130
>UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Marinobacter aquaeolei VT8|Rep: DEAD/DEAH box
helicase domain protein - Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8)(Marinobacter
hydrocarbonoclasticus (strain DSM 11845))
Length = 528
Score = 67.7 bits (158), Expect = 3e-10
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 429
A + G ++ AQ+GTGKTA F++ +L +ID ++ E Q L+LAPTRELA Q+ +
Sbjct: 57 ALLAGNHLLGVAQTGTGKTAAFALPLLSRIDANVAEPQILVLAPTRELAIQVAEAFTTYA 116
Query: 430 DHL-NAKCHACIGGTNVREDIRQLENGVMLVVG 525
N GG + IR L+ G ++VG
Sbjct: 117 SKFRNFHVLPIYGGQDFSPQIRGLKRGAQVIVG 149
>UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n=4;
Eukaryota|Rep: ATP-dependent RNA helicase, putative -
Theileria parva
Length = 470
Score = 67.7 bits (158), Expect = 3e-10
Identities = 34/90 (37%), Positives = 56/90 (62%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ G+D+I A++G+GKTA F+I ILQ++ + +LILAPTREL+ QI++ +I+LG
Sbjct: 76 LSGKDIIGLAETGSGKTAAFTIPILQKLLEKPQRLFSLILAPTRELSLQIKEQLISLGSE 135
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
+ +GG ++ QL ++VG
Sbjct: 136 IGLDVCLILGGLDMVSQALQLSKKPHIIVG 165
>UniRef50_Q17JB5 Cluster: DEAD box ATP-dependent RNA helicase; n=4;
Eukaryota|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 699
Score = 67.7 bits (158), Expect = 3e-10
Identities = 49/136 (36%), Positives = 67/136 (49%), Gaps = 5/136 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVVI 420
+ GRD++ AQ+G+GKT + L I +R AL+LAPTRELAQQIQ+V
Sbjct: 157 LSGRDMVGIAQTGSGKTLAYIAPALVHITHQDQLRRGDGPIALVLAPTRELAQQIQQVAT 216
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWF 600
G +NA GG IR LE G +V+ I R + ++ +
Sbjct: 217 DFGQRINANNTCVFGGAPKGPQIRDLERGAEIVIATPGRLIDF-LERGITNLRR-CTYLV 274
Query: 601 LMKADEMLSRGFKGQI 648
L +AD ML GF+ QI
Sbjct: 275 LDEADRMLDMGFEPQI 290
>UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein;
n=6; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z)
Length = 656
Score = 67.7 bits (158), Expect = 3e-10
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ G+DV QAQ+GTGKTA F I I++++D + QAL+L+PTRELA Q + L +
Sbjct: 40 LDGKDVTGQAQTGTGKTAAFGIPIIERLDPDNKNVQALVLSPTRELAIQTAEEFSRLMKY 99
Query: 436 LNA-KCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKA 612
GG + +R L+ V +V+G I R + F L +A
Sbjct: 100 KKGLNVVPIYGGQPIERQLRALKGTVQVVIGTPGRVI-DHIKRGTLHLDSVTMF-ILDEA 157
Query: 613 DEMLSRGFKGQI 648
D+ML GF+ I
Sbjct: 158 DQMLDMGFREDI 169
>UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
DHH1 - Encephalitozoon cuniculi
Length = 489
Score = 67.7 bits (158), Expect = 3e-10
Identities = 31/88 (35%), Positives = 58/88 (65%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 441
G++++ ++++GTGKTA++ + +L I++S Q +IL P RELA QI + V + +
Sbjct: 145 GKNLLVRSKNGTGKTASYIVPMLNMINSSELSIQGIILVPIRELALQISRNVKRMSEGTG 204
Query: 442 AKCHACIGGTNVREDIRQLENGVMLVVG 525
+GGT++++DI ++ NGV ++VG
Sbjct: 205 VISAPVVGGTSMQDDIIRVSNGVHVMVG 232
>UniRef50_UPI0000499D6F Cluster: DEAD/DEAH box helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 585
Score = 67.3 bits (157), Expect = 4e-10
Identities = 39/94 (41%), Positives = 54/94 (57%), Gaps = 8/94 (8%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQIQKVVI 420
RD+IA A++GTGKT + I ++Q + +TS AL+LAPTRELA QIQK +
Sbjct: 214 RDLIALAETGTGKTFAYLIPLIQFVLKLPKLTEETSASGPYALVLAPTRELALQIQKETL 273
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
L + CIGG ++ I +L NG +VV
Sbjct: 274 KLATPFGLRVCCCIGGEPMQPQIEELSNGAEIVV 307
>UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18;
Bacteria|Rep: ATP-dependent RNA helicase DeaD - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 658
Score = 67.3 bits (157), Expect = 4e-10
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ G D++ +AQ+GTGKTA F++ +L ++D +++ Q L+LAPTRELA Q+ + +
Sbjct: 79 LAGHDLLGEAQTGTGKTAAFALPLLDRLDLAVKNPQVLVLAPTRELAIQVAEAFQRYAKN 138
Query: 436 L-NAKCHACIGGTNVREDIRQLENGVMLVVG 525
L GG ++ +RQL G ++VG
Sbjct: 139 LPGFHVLPVYGGQSMVVQLRQLARGAHVIVG 169
>UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA
helicase; n=2; Bacteria|Rep: Cold-shock DeaD box
ATP-dependent RNA helicase - Frankia alni (strain
ACN14a)
Length = 608
Score = 67.3 bits (157), Expect = 4e-10
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIAL 426
+ GRD++ QA +GTGKTA F++ +L ++ T QAL+L PTRELA Q+ + +
Sbjct: 92 VAGRDLLGQAATGTGKTAAFALPLLHRLTDDRTGDHGPQALVLVPTRELAVQVSEAIHRY 151
Query: 427 GDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
G L A+ GG + +R L GV +VV
Sbjct: 152 GRDLGARVLPVYGGAPIGRQVRALVQGVDVVV 183
Score = 36.7 bits (81), Expect = 0.70
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +2
Query: 128 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 253
D D + V F ++ L+ ELLR + A G+E+P+ IQ+ A+ P
Sbjct: 49 DIDPAEDVAGFAELALRPELLRSLAALGYEEPTPIQREAVPP 90
>UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein;
n=62; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain MR-7)
Length = 549
Score = 67.3 bits (157), Expect = 4e-10
Identities = 35/95 (36%), Positives = 58/95 (61%), Gaps = 4/95 (4%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR----ECQALILAPTRELAQQIQKVV 417
A + G+DV+A AQ+GTGKTA F++ +L+ + + + +AL+L PTRELA Q+ + V
Sbjct: 34 AVLTGKDVMAAAQTGTGKTAGFTLPLLELLSKGNKAKAGQIRALVLTPTRELAAQVSESV 93
Query: 418 IALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
G +L + GG + I++L +GV ++V
Sbjct: 94 ETYGKYLPLRSAVVFGGVPINPQIQKLRHGVDVLV 128
>UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3;
Proteobacteria|Rep: ATP-dependent RNA helicase DbpA -
Alteromonas macleodii 'Deep ecotype'
Length = 459
Score = 67.3 bits (157), Expect = 4e-10
Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALGD 432
+QG+DVI QAQ+G+GKT F I L++I+ + QA++L PTRELA+Q+ Q+ A D
Sbjct: 39 LQGKDVIGQAQTGSGKTLCFVIPALEKIEVNDFSTQAIMLCPTRELAEQVAQQCRSAAKD 98
Query: 433 HLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
N K GG + I+ L++ ++VG
Sbjct: 99 IGNIKVTTLCGGQPMGPQIQSLKHSPHIIVG 129
>UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Erythrobacter sp. NAP1
Length = 484
Score = 67.3 bits (157), Expect = 4e-10
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATF---SISILQQIDTSI--RECQALILAPTRELAQQIQKVVI 420
++GRD++ AQ+GTGKTA F SI L++ D I + C+ L+LAPTREL QI
Sbjct: 37 LEGRDLLGIAQTGTGKTAAFMLPSIDRLREADNRIPFKSCRMLVLAPTRELVSQIAASAK 96
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
G K + +GGT+V +D +L G +++
Sbjct: 97 DYGALAGLKVQSIVGGTSVNKDRNKLHRGTDILI 130
>UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein;
n=132; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain ANA-3)
Length = 578
Score = 67.3 bits (157), Expect = 4e-10
Identities = 35/95 (36%), Positives = 58/95 (61%), Gaps = 4/95 (4%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR----ECQALILAPTRELAQQIQKVV 417
A + G+DV+A AQ+GTGKTA F++ +L+ + + + +AL+L PTRELA Q+ + V
Sbjct: 34 AVLTGKDVMAAAQTGTGKTAGFTLPLLELLSKGNKAKAGQIRALVLTPTRELAAQVSESV 93
Query: 418 IALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
G +L + GG + I++L +GV ++V
Sbjct: 94 ETYGKYLPLRSAVVFGGVPINPQIQKLRHGVDVLV 128
>UniRef50_Q3LWE1 Cluster: Translation initiation factor 4A2; n=1;
Bigelowiella natans|Rep: Translation initiation factor
4A2 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 378
Score = 67.3 bits (157), Expect = 4e-10
Identities = 36/90 (40%), Positives = 51/90 (56%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++GRD+I Q+ SGTGKT + I Q+ SI Q LIL PTREL+ QI+ V L +
Sbjct: 45 LKGRDIIYQSPSGTGKTTCYIIGTSNQLCQSINSPQCLILVPTRELSIQIRNVFNVLNIY 104
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
+C GG + ED++ L+ +VG
Sbjct: 105 TKNSITSCHGGRWLGEDLKNLKKNFHGIVG 134
>UniRef50_A4V6K5 Cluster: DEAD box polypeptide 19 protein; n=3;
Platyhelminthes|Rep: DEAD box polypeptide 19 protein -
Dugesia japonica (Planarian)
Length = 434
Score = 67.3 bits (157), Expect = 4e-10
Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Frame = +1
Query: 259 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 438
Q +++IAQ+QSGTGKTATF +++L +ID + CQ L +APTREL QI +V I + +
Sbjct: 86 QPKNLIAQSQSGTGKTATFLLTMLSKIDVNDPFCQCLCMAPTRELVNQIAEVAIIMSKFM 145
Query: 439 -NAKCHACIGGTNVREDIRQLENGVMLVVG 525
N K I G + DI + + +++G
Sbjct: 146 NNVKITCAIKG--LSPDILEGQINSQIIIG 173
Score = 45.6 bits (103), Expect = 0.002
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +2
Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
V++F+D+ LK ELL GI + GF KPS+IQ+RA+
Sbjct: 47 VKSFEDLQLKSELLNGISSMGFRKPSSIQERAL 79
>UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=195;
cellular organisms|Rep: ATP-independent RNA helicase
dbpA - Escherichia coli (strain K12)
Length = 457
Score = 67.3 bits (157), Expect = 4e-10
Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 429
A + G+DV QA++G+GKTA F + +LQQID S+ + QAL+L PTRELA Q+ + L
Sbjct: 36 AILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLA 95
Query: 430 DHL-NAKCHACIGG 468
L N K GG
Sbjct: 96 RFLPNTKILTLCGG 109
>UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3) (Regulator of steroidogenic factor 1)
(ROSF-1); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to Probable ATP-dependent RNA helicase DDX20
(DEAD box protein 20) (DEAD box protein DP 103)
(Component of gems 3) (Gemin-3) (Regulator of
steroidogenic factor 1) (ROSF-1) - Tribolium castaneum
Length = 688
Score = 66.9 bits (156), Expect = 6e-10
Identities = 33/79 (41%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 441
G D+I +++SGTGKT FS L+ ++T+ Q LIL PTRE+A QI+ V+ ++G H+N
Sbjct: 61 GFDLIVKSKSGTGKTLVFSTIALETVNTAKDHLQVLILVPTREIAVQIEDVLRSVGCHVN 120
Query: 442 A-KCHACIGGTNVREDIRQ 495
K + IGG + +D+++
Sbjct: 121 GLKIESFIGGRPLEDDLKK 139
>UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box
family; n=6; Bacteria|Rep: ATP-dependent RNA helicase,
DEAD-box family - Sulfurovum sp. (strain NBC37-1)
Length = 492
Score = 66.9 bits (156), Expect = 6e-10
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++G D+IAQAQ+GTGKTA F + I+ + + L++ PTRELA Q+ + G
Sbjct: 36 LEGHDMIAQAQTGTGKTAAFGLPIMSMMKAD-GSVEGLVIVPTRELAMQVSDELFRFGKL 94
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKAD 615
K GGT + I +++ ++V R + + +F L +AD
Sbjct: 95 SGLKTATVYGGTAYGKQIERIKQASIVVATPGRLQDLL----MSGKIKLNPHFVVLDEAD 150
Query: 616 EMLSRGFKGQI----P*CPQDVVSLMFKSYLLSGL 708
EML GF +I P++ +LMF + + +G+
Sbjct: 151 EMLDMGFLDEIKNIFTFLPKERQTLMFSATMPNGI 185
>UniRef50_A5G1U8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Acidiphilium cryptum JF-5|Rep: DEAD/DEAH box
helicase domain protein - Acidiphilium cryptum (strain
JF-5)
Length = 525
Score = 66.9 bits (156), Expect = 6e-10
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSI-----RECQALILAPTRELAQQIQKVVI 420
++G D++ AQ+GTGKTA F + IL +I + R C+AL+LAPTRELA QI
Sbjct: 92 LEGHDLVGIAQTGTGKTAAFVLPILHRIAANRARPAPRACRALVLAPTRELATQIADAAR 151
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
G IGG R++E+GV L+V
Sbjct: 152 TYGKFTRPSVAVVIGGAKPGPQARRMESGVDLLV 185
>UniRef50_A1IIT5 Cluster: RNA helicase; n=1; Neobenedenia
girellae|Rep: RNA helicase - Neobenedenia girellae
Length = 634
Score = 66.9 bits (156), Expect = 6e-10
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 12/143 (8%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI-DTSIREC-----------QALILAPTRELAQ 399
+ GRD +A AQ+G+GKTA F + IL+ + D S +A+++ PT ELAQ
Sbjct: 241 LAGRDALATAQTGSGKTAAFMLPILKTVLDPSKGPVLGVAADGKPAPRAIVVVPTHELAQ 300
Query: 400 QIQKVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQ 579
QI + + + H GG NVR D+ QL +GV ++V + R
Sbjct: 301 QILFEGMKFATGTSVRVHLTHGGVNVRHDLMQLRSGVSVLVATPGRLLHF--IRSGLISL 358
Query: 580 QPSNFWFLMKADEMLSRGFKGQI 648
NF L +AD +L GF+G++
Sbjct: 359 SMCNFIVLDEADRLLDEGFEGEM 381
>UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
eIF4A - Encephalitozoon cuniculi
Length = 425
Score = 66.9 bits (156), Expect = 6e-10
Identities = 47/131 (35%), Positives = 65/131 (49%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
I GRD+ AQAQSGTGKT F+++ LQ D S Q L+LA TRE+A Q LG
Sbjct: 73 IDGRDIRAQAQSGTGKTGAFAVAALQICDMSQDVTQILVLASTREIAAQNAARFEDLGCF 132
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKAD 615
+ A+ GG+ + D LE +VVG + + + + +AD
Sbjct: 133 MGARVALLSGGSPIAADKVALEKKPHIVVGTPGRVEHMININELS--MDNIKLFVIDEAD 190
Query: 616 EMLSRGFKGQI 648
EML GF+ Q+
Sbjct: 191 EMLKAGFQEQV 201
Score = 48.4 bits (110), Expect = 2e-04
Identities = 21/42 (50%), Positives = 31/42 (73%)
Frame = +2
Query: 128 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 253
D+ ++ +T++D LKE+LL+GIY+ GFE PS IQ+ AI P
Sbjct: 30 DSSQIRMFDTWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQP 71
>UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3); n=1; Apis mellifera|Rep: PREDICTED: similar
to Probable ATP-dependent RNA helicase DDX20 (DEAD box
protein 20) (DEAD box protein DP 103) (Component of gems
3) (Gemin-3) - Apis mellifera
Length = 648
Score = 66.5 bits (155), Expect = 8e-10
Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 438
G D+I +A+SGTGKT F I L+ ID I Q LILAPTRE+A QI +V ++G +
Sbjct: 33 GFDLIMRAKSGTGKTLVFCIISLEMIDIDISSVQVLILAPTREIAVQIAQVFSSVGCEIK 92
Query: 439 NAKCHACIGGTNVREDIRQLEN 504
+ K IGG + D +++ N
Sbjct: 93 DLKVEVFIGGLAIENDKKKVNN 114
>UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=7;
Prochlorococcus marinus|Rep: DEAD/DEAH box helicase-like
protein - Prochlorococcus marinus (strain MIT 9312)
Length = 593
Score = 66.5 bits (155), Expect = 8e-10
Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIAL-GDH 435
GRD++ QAQ+GTGKTA F++ +++++ D + L++ PTRELA Q+ + + +
Sbjct: 88 GRDLLGQAQTGTGKTAAFALPLIEKLADNKELNAKVLVMTPTRELATQVAESFKSYSSES 147
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKAD 615
N K A GGT+ R I L+ V +VVG + R N L +AD
Sbjct: 148 TNFKTIAIYGGTDYRNQIYALKRKVDVVVGTPGRIMDH--IRQGTFKVNSINCLVLDEAD 205
Query: 616 EMLSRGF 636
EML+ GF
Sbjct: 206 EMLNMGF 212
>UniRef50_Q0TQ86 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=3; Clostridium perfringens|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family - Clostridium
perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
Length = 405
Score = 66.5 bits (155), Expect = 8e-10
Identities = 34/92 (36%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++G++VI +A++GTGKT + + I+++ID S E QA+IL+PT EL QI V+ L
Sbjct: 37 LKGKNVIGKAETGTGKTLAYLLPIIEKIDDSKNEMQAIILSPTHELGVQINNVLNDLKRG 96
Query: 436 LNAKCHA--CIGGTNVREDIRQLENGVMLVVG 525
L K + +G N++ + +L+N ++VG
Sbjct: 97 LGKKITSTTLVGSGNIKRQMEKLKNKPHILVG 128
>UniRef50_Q4P7Y2 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 568
Score = 66.5 bits (155), Expect = 8e-10
Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 11/142 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID--------TSIRECQALILAPTRELAQQIQK 411
+Q RD+I A++G+GKTA+F I +L I T QALIL PTRELAQQI+
Sbjct: 302 LQNRDLIGIAETGSGKTASFLIPLLAYISKLPKLDEHTKALGPQALILVPTRELAQQIET 361
Query: 412 VVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV---GHSRSCIWI**TRPCASCQQ 582
L +C + +GG ++ + L +G +V+ G + CI R Q
Sbjct: 362 ETNKFAGRLGLRCVSIVGGRDMNDQAYALRDGAEIVIATPGRLKDCI----ERHVLVLSQ 417
Query: 583 PSNFWFLMKADEMLSRGFKGQI 648
+ + +AD+M+ GF+ Q+
Sbjct: 418 -CTYVVMDEADKMVDMGFEPQV 438
>UniRef50_A5E058 Cluster: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5; n=1; Lodderomyces elongisporus NRRL
YB-4239|Rep: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5 - Lodderomyces elongisporus (Yeast)
(Saccharomyces elongisporus)
Length = 994
Score = 66.5 bits (155), Expect = 8e-10
Identities = 41/137 (29%), Positives = 72/137 (52%), Gaps = 6/137 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVI 420
+ GRD+I A++G+GKT ++ + +++ I + L+L+PTRELA QI+K ++
Sbjct: 423 LSGRDMIGVAKTGSGKTLSYVLPMVRHIQDQLFPKPGEGPIGLVLSPTRELALQIEKEIL 482
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVG-HSRSCIWI**TRPCASCQQPSNFW 597
++ K C GG+N+ I +L+ GV ++V R + + + + F
Sbjct: 483 KFSSTMDLKVCCCYGGSNIENQISELKRGVNVIVATPGRLIDLLAANGGRITTLRRTTFV 542
Query: 598 FLMKADEMLSRGFKGQI 648
L +AD M GF+ QI
Sbjct: 543 VLDEADRMFDMGFEPQI 559
>UniRef50_Q6BML1 Cluster: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5; n=4; Saccharomycetales|Rep:
Pre-mRNA-processing ATP-dependent RNA helicase PRP5 -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 913
Score = 66.5 bits (155), Expect = 8e-10
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTS--IRECQA---LILAPTRELAQQIQKV 414
A + GRD+I A++G+GKT +F + +L+ I +R LI+ PTRELA QI K
Sbjct: 350 AIMSGRDIIGVAKTGSGKTLSFVLPLLRHIQDQPPLRRGDGPIGLIMTPTRELALQIHKE 409
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVG-HSRSCIWI**TRPCASCQQPSN 591
+ LN C GG+++ I +L+ G ++VG R + + Q
Sbjct: 410 LNHFTKKLNISSCCCFGGSSIESQIAELKKGAQIIVGTPGRIIDLLAANSGRVTNLQRVT 469
Query: 592 FWFLMKADEMLSRGFKGQI 648
+ L +AD M GF+ Q+
Sbjct: 470 YLVLDEADRMFDMGFEPQV 488
>UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n=2;
Bacteria|Rep: Superfamily II DNA and RNA helicases -
Syntrophus aciditrophicus (strain SB)
Length = 572
Score = 66.1 bits (154), Expect = 1e-09
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Frame = +1
Query: 268 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 444
D++ AQ+GTGKTA F I ++Q DT ++ QAL+L PTREL Q+ + +G ++
Sbjct: 42 DLVGLAQTGTGKTAAFGIPLIQLTDTRLKRTQALVLCPTRELCVQVAGDLNLMGRYVQKL 101
Query: 445 KCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKADEML 624
K GG ++ +L G +VV + R A ++ L +ADEML
Sbjct: 102 KIVPVYGGASIVSQTEELRKGAQVVVATPGRLHDL--IRRGAVDLSGVSWVVLDEADEML 159
Query: 625 SRGFKGQI 648
GF+ ++
Sbjct: 160 QMGFQDEL 167
>UniRef50_Q1IMK6 Cluster: DEAD/DEAH box helicase-like; n=1;
Acidobacteria bacterium Ellin345|Rep: DEAD/DEAH box
helicase-like - Acidobacteria bacterium (strain
Ellin345)
Length = 423
Score = 66.1 bits (154), Expect = 1e-09
Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIALGD 432
+ GRD++A AQ+GTGKT F I L+ + DT Q LIL PTRELA Q+ V L
Sbjct: 62 LDGRDILATAQTGTGKTLAFIIPALEMLRDTEPCGVQVLILVPTRELAMQVHGVYEQLKG 121
Query: 433 HLNAKCHACIGGTNVREDIRQLENGVMLVV 522
+GGT+ R I+ + +G +VV
Sbjct: 122 KKLKSAALVMGGTSERNQIQSIRSGARVVV 151
>UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1;
Pseudoalteromonas atlantica T6c|Rep: DEAD/DEAH box
helicase-like - Pseudoalteromonas atlantica (strain T6c
/ BAA-1087)
Length = 458
Score = 66.1 bits (154), Expect = 1e-09
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Frame = +1
Query: 268 DVIAQAQSGTGKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVVIALGDH 435
D++A AQ+GTGKTA F++ +LQ++ T ++ ++LI+ PTRELA Q+ V
Sbjct: 40 DLLAVAQTGTGKTAAFTLPLLQRLAAKQSTKVQGVRSLIVTPTRELAAQVAISVEIYSTQ 99
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVV 522
LN + A GG + I QL+ GV +++
Sbjct: 100 LNIRSFAVYGGVRIEPQIAQLQEGVDVLI 128
>UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2;
sulfur-oxidizing symbionts|Rep: ATP-dependent RNA
helicase DeaD - Vesicomyosocius okutanii subsp.
Calyptogena okutanii (strain HA)
Length = 608
Score = 66.1 bits (154), Expect = 1e-09
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ +D+I QAQ+GTGKTA F + +L +I+ +I Q LILAPTRELA Q+ + V
Sbjct: 47 LNNKDIIGQAQTGTGKTAAFVLPLLDKINLNINAPQLLILAPTRELAIQVSEAVQTYARG 106
Query: 436 LNA-KCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKA 612
+ GG + +R L+ GV +VG + + + +F L +A
Sbjct: 107 MKGFHVLPIYGGQSYDIQLRPLKRGVHAIVG-TPGRVMDHIEKKTLKLDNLKSF-VLDEA 164
Query: 613 DEMLSRGF 636
DEML GF
Sbjct: 165 DEMLKMGF 172
>UniRef50_Q4Q1P0 Cluster: DEAD box RNA helicase, putative; n=5;
Trypanosomatidae|Rep: DEAD box RNA helicase, putative -
Leishmania major
Length = 657
Score = 66.1 bits (154), Expect = 1e-09
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 6/97 (6%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTS----IRECQALILAPTRELAQQIQKVV 417
A +QGRD++A+A++G GKT F I I++ + S A+I+ PTREL QI+ V+
Sbjct: 196 AALQGRDLLAEAKTGAGKTLAFLIPIVEIVCRSGFRPSNGTAAIIIGPTRELCLQIEGVL 255
Query: 418 IALGDHLNAKCH--ACIGGTNVREDIRQLENGVMLVV 522
+ L H N CIGG + ++ +L NG+M+VV
Sbjct: 256 LKLLKHFNGSLTFLCCIGGQSRNQEGFKLANGIMIVV 292
>UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;
Eukaryota|Rep: ATP-dependent rRNA helicase RRP3 -
Ustilago maydis (Smut fungus)
Length = 551
Score = 66.1 bits (154), Expect = 1e-09
Identities = 34/74 (45%), Positives = 48/74 (64%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+Q RDVI AQ+G+GKTA F+I ILQ + + + A +LAPTRELA QI + V ALG
Sbjct: 139 LQARDVIGLAQTGSGKTAAFTIPILQALWDNPKPFFACVLAPTRELAYQISQQVEALGST 198
Query: 436 LNAKCHACIGGTNV 477
+ + +GG ++
Sbjct: 199 IGVRSATIVGGMDM 212
>UniRef50_UPI00006CBDDC Cluster: DEAD/DEAH box helicase family
protein; n=1; Tetrahymena thermophila SB210|Rep:
DEAD/DEAH box helicase family protein - Tetrahymena
thermophila SB210
Length = 598
Score = 65.7 bits (153), Expect = 1e-09
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 8/92 (8%)
Frame = +1
Query: 253 FIQGRDVIAQAQSGTGKTATFSISI----LQQIDTSIREC-QALILAPTRELAQQIQKVV 417
FI+ D+ +AQ+G+GKT F + I ++Q+ T+ + C AL++APTRELA+QI ++
Sbjct: 43 FIKNHDLAVEAQTGSGKTLAFLLPIFNVLIKQVKTANKNCVYALVIAPTRELAKQIHEIA 102
Query: 418 IALGDHL---NAKCHACIGGTNVREDIRQLEN 504
+ L HL CIGG + + D+ +++
Sbjct: 103 VQLASHLENNQFSIQLCIGGVSTKIDVSNIQS 134
>UniRef50_Q81RE0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=9; Bacillus cereus group|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 389
Score = 65.7 bits (153), Expect = 1e-09
Identities = 29/90 (32%), Positives = 55/90 (61%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++G+DVIA++ +GTGKT + + +L +I+ +++ Q ++LAPTREL QI + V
Sbjct: 33 LEGQDVIAESPTGTGKTLAYLLPLLHKINPEVKQPQVVVLAPTRELVMQIHEEVQKFTAG 92
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
+ IGG +++ + +L+ ++VG
Sbjct: 93 TEISGASLIGGADIKRQVEKLKKHPRVIVG 122
>UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Zymomonas mobilis
Length = 458
Score = 65.7 bits (153), Expect = 1e-09
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSI-----RECQALILAPTRELAQQIQKVVI 420
++G+D+ AQ+GTGKTA F++ + + T+ R C+ LIL+PTRELA QI +
Sbjct: 41 LEGKDLCGIAQTGTGKTAAFALPSIHYLATNPQARPQRGCRMLILSPTRELASQIARACN 100
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWF 600
HL +A GG + +R L+ G ++V + + R A + +
Sbjct: 101 DYTRHLRMSVNAVFGGVPIGRQMRMLDRGTDILVATPGRLLDLIDQR--ALVLKDVEVFV 158
Query: 601 LMKADEMLSRGF 636
L +AD+ML GF
Sbjct: 159 LDEADQMLDLGF 170
>UniRef50_Q5FNK0 Cluster: ATP-dependent RNA helicase; n=1;
Gluconobacter oxydans|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 393
Score = 65.7 bits (153), Expect = 1e-09
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTS--IRECQALILAPTRELAQQIQKVVIALG 429
++G+DV+ +Q+G+GKTA F + +LQ++ + +ALIL PTRELA Q V LG
Sbjct: 55 LEGKDVLVGSQTGSGKTAAFVLPMLQKLTEAGPAPGPRALILEPTRELAAQTAAVCRQLG 114
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVVG-HSR 534
L+ K GGT+ + ++ + +GV ++V H R
Sbjct: 115 RRLSLKTRVICGGTSREQQVQSVSDGVDIIVATHGR 150
>UniRef50_Q18W60 Cluster: DEAD/DEAH box helicase-like; n=2;
Desulfitobacterium hafniense|Rep: DEAD/DEAH box
helicase-like - Desulfitobacterium hafniense (strain
DCB-2)
Length = 425
Score = 65.7 bits (153), Expect = 1e-09
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVV 417
++G D++ AQ+GTGKTA F+I ILQ + R+ +AL+LAPTRELA QI +
Sbjct: 36 LEGLDLLGCAQTGTGKTAAFAIPILQSLAMGQGLLKGKRQIRALVLAPTRELATQIAESF 95
Query: 418 IALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
A G +L + GG R+LE G+ ++V
Sbjct: 96 TAYGVNLPLRTLVIFGGVGQAPQTRKLEKGIDILV 130
>UniRef50_Q0BUS0 Cluster: ATP-dependent RNA helicase; n=3;
Rhodospirillales|Rep: ATP-dependent RNA helicase -
Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 731
Score = 65.7 bits (153), Expect = 1e-09
Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 7/135 (5%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQI---DTSIRECQA---LILAPTRELAQQIQKVVIAL 426
RD++ AQ+G+GKT + +++ + D + + A LI+APTRELA Q+Q+ ++ L
Sbjct: 81 RDLLVSAQTGSGKTVAYGLALADTLLGADERLGQAGAPLALIVAPTRELAMQVQQELLWL 140
Query: 427 GDHLNAKCHACIGGTNVREDIRQLENGVMLVVG-HSRSCIWI**TRPCASCQQPSNFWFL 603
A+ +CIGG + R + + LE G +VVG R C + R S + L
Sbjct: 141 YGPAGARVVSCIGGMDARREAQALERGCHIVVGTPGRLCDHLGRGRLNLSRLRAV---VL 197
Query: 604 MKADEMLSRGFKGQI 648
+ADEML GF+ ++
Sbjct: 198 DEADEMLDLGFRDEL 212
>UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box
helicase, n-terminal; n=3; Bacteria|Rep: HeliCase,
c-terminal:dead/deah box helicase, n-terminal -
Stigmatella aurantiaca DW4/3-1
Length = 608
Score = 65.7 bits (153), Expect = 1e-09
Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE---CQALILAPTRELAQQIQKVVIAL 426
++G+D++ A +GTGKTA FS+ +LQ+I AL+L PTRELA Q+ + +
Sbjct: 71 LEGKDLLGIAATGTGKTAAFSLPLLQRITPGAHAPFTASALVLVPTRELAMQVAEAIHRY 130
Query: 427 GDHLNAKCHACIGGTNVREDIRQLENGVMLVVG-HSRSCIWI**TRPCASCQQPSNFWFL 603
G L GG + + +R L+ GV +VV R+ + R +Q L
Sbjct: 131 GQKLGISVVPLYGGQVISQQLRVLKRGVDVVVATPGRALDHL--QRKTLKLEQ-VRVVVL 187
Query: 604 MKADEMLSRGF 636
+ADEML GF
Sbjct: 188 DEADEMLDMGF 198
>UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellular
organisms|Rep: ATP-dependent RNA helicase -
Janthinobacterium sp. (strain Marseille) (Minibacterium
massiliensis)
Length = 778
Score = 65.7 bits (153), Expect = 1e-09
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ RDV+ QAQ+GTGKTA+F++ IL +ID QAL+LAPTRELA Q+ + +
Sbjct: 42 LNNRDVLGQAQTGTGKTASFALPILARIDIKQTTPQALVLAPTRELAIQVAEAFQRYATY 101
Query: 436 L-NAKCHACIGGTNVREDIRQLENGVMLVVG 525
+ GG + + L GV +VVG
Sbjct: 102 IPGFHVLPIYGGQSYGAQLSALRRGVHVVVG 132
>UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 400
Score = 65.7 bits (153), Expect = 1e-09
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Frame = +1
Query: 253 FIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 432
F++ +DVIA+A +GTGKT F I +++ ID QAL+LAPTRELA QIQ + L +
Sbjct: 46 FMEWKDVIAKAPTGTGKTFAFGIPMVEHIDPESDAVQALVLAPTRELALQIQDELRDLCE 105
Query: 433 HLNAKCHACI-GGTNVREDIRQLENGVMLVV 522
C+ GG + + I L+ +VV
Sbjct: 106 FKEGVRSVCLYGGAPIEKQITTLKKHPQIVV 136
>UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA
helicase SA1885; n=13; Staphylococcus|Rep: Probable
DEAD-box ATP-dependent RNA helicase SA1885 -
Staphylococcus aureus (strain N315)
Length = 506
Score = 65.7 bits (153), Expect = 1e-09
Identities = 33/90 (36%), Positives = 52/90 (57%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+QG D++ QAQ+GTGKT F I +++++ + Q+LILAPTRELA Q+ + +
Sbjct: 37 LQGIDILGQAQTGTGKTGAFGIPLIEKV-VGKQGVQSLILAPTRELAMQVAEQLREFSRG 95
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
+ GG + I+ L+ G +VVG
Sbjct: 96 QGVQVVTVFGGMPIERQIKALKKGPQIVVG 125
>UniRef50_Q6MQY6 Cluster: ATP-dependent RNA helicase; n=1;
Bdellovibrio bacteriovorus|Rep: ATP-dependent RNA
helicase - Bdellovibrio bacteriovorus
Length = 473
Score = 65.3 bits (152), Expect = 2e-09
Identities = 35/91 (38%), Positives = 52/91 (57%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 429
A + G D+IA AQ+G+GKT F++S+L + E + LIL P+RE+AQQI KV + L
Sbjct: 66 ASLDGSDIIAIAQTGSGKTLAFALSLLTTLQKK-PEARGLILVPSREMAQQIYKVFLELC 124
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
+ IGGT + QL+ L++
Sbjct: 125 AEMPVSVCLAIGGTTGSKQANQLKKNPRLII 155
>UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59;
Betaproteobacteria|Rep: ATP-dependent RNA helicase RhlE
- Burkholderia mallei (Pseudomonas mallei)
Length = 482
Score = 65.3 bits (152), Expect = 2e-09
Identities = 38/97 (39%), Positives = 55/97 (56%), Gaps = 8/97 (8%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQ----QIDTSI----RECQALILAPTRELAQQIQK 411
+ GRDV+ AQ+GTGKTA+FS+ I+Q Q +TS +ALIL PTRELA Q+
Sbjct: 46 LSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAA 105
Query: 412 VVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
V A H + GG ++ + +L GV +++
Sbjct: 106 NVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILI 142
>UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein;
n=37; Gammaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Shewanella sp. (strain MR-4)
Length = 427
Score = 65.3 bits (152), Expect = 2e-09
Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 8/99 (8%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQK 411
A + GRDV+A A +G+GKTA F++ +LQ++ + S + + L+L PTRELAQQ+
Sbjct: 42 AVLSGRDVLAGANTGSGKTAAFAVPLLQRLFEAKTAEKSAGQVRCLVLVPTRELAQQVAD 101
Query: 412 VVIALGDHLNA--KCHACIGGTNVREDIRQLENGVMLVV 522
++ H N K A GG +V ++ L G ++V
Sbjct: 102 SFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLV 140
>UniRef50_Q087U7 Cluster: DEAD/DEAH box helicase domain protein;
n=5; Gammaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Shewanella frigidimarina (strain NCIMB
400)
Length = 421
Score = 65.3 bits (152), Expect = 2e-09
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 14/145 (9%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI-----------DT---SIRECQALILAPTREL 393
+ G+DV+A AQ+GTGKTA F++ +L Q+ DT + AL+L PTREL
Sbjct: 36 LSGKDVMAGAQTGTGKTAAFALPLLHQLLTHQDNLAAQPDTQHINSTPITALVLVPTREL 95
Query: 394 AQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCAS 573
AQQ+ + + GG ++ E IRQL NG ++V + + R S
Sbjct: 96 AQQVHSSIEQYAYGSSVTSVMVYGGVSIGEQIRQLANGTHILVATPGRLLDLLRKR-ALS 154
Query: 574 CQQPSNFWFLMKADEMLSRGFKGQI 648
Q ++ F +AD ML GFK +I
Sbjct: 155 LSQLTHLVF-DEADRMLDMGFKDEI 178
>UniRef50_A7CUH7 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Opitutaceae bacterium TAV2|Rep: DEAD/DEAH box
helicase domain protein - Opitutaceae bacterium TAV2
Length = 536
Score = 65.3 bits (152), Expect = 2e-09
Identities = 51/175 (29%), Positives = 73/175 (41%), Gaps = 4/175 (2%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 429
A + GRDV AQ+GTGKTA F++ IL ++ R + L+L PTRELA Q+++
Sbjct: 166 AVLAGRDVTGSAQTGTGKTAAFALPILHKLGAHERRLRCLVLEPTRELALQVEEAFQKYS 225
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMK 609
+ + GG + L+ GV +V + L +
Sbjct: 226 KYTDLTATVVYGGVGYGKQREDLQRGVDVVAATPGRLLDH--IEQGTMTLADVEILVLDE 283
Query: 610 ADEMLSRGF----KGQIP*CPQDVVSLMFKSYLLSGLPCPDGWYLEVTSEAFIGE 762
D ML GF K + CPQ +L F + L L W L E IG+
Sbjct: 284 VDRMLDMGFLPDVKRIVQQCPQARQTLFFSATLPPELAQLASWALRDPVEIKIGQ 338
>UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1;
Planctomyces maris DSM 8797|Rep: ATP-dependent RNA
helicase - Planctomyces maris DSM 8797
Length = 445
Score = 65.3 bits (152), Expect = 2e-09
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC-----QALILAPTRELAQQIQKV 414
A ++GRDV+ AQ+GTGKTA ++ IL Q+ + R+ AL+LAPTRELA QI
Sbjct: 35 AALEGRDVLGCAQTGTGKTAALALPILNQLGKNSRKSIPHHPLALVLAPTRELAIQIGDS 94
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
A G HL + GG ++ L+ G ++V
Sbjct: 95 FDAYGRHLKLRSVLIYGGVGQGNQVKALKRGAHILV 130
>UniRef50_A4C6L9 Cluster: ATP-dependent RNA helicase, DEAD box
family protein; n=1; Pseudoalteromonas tunicata D2|Rep:
ATP-dependent RNA helicase, DEAD box family protein -
Pseudoalteromonas tunicata D2
Length = 416
Score = 65.3 bits (152), Expect = 2e-09
Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQ---IDTS---IRECQALILAPTRELAQQIQK 411
A + G D A A +GTGKTA + + LQ+ +D S +R +AL L PTRELA Q+++
Sbjct: 35 AVLSGTDTYAIAPTGTGKTAAYLLPTLQELSRVDNSAEQVRPVRALFLVPTRELAVQVEE 94
Query: 412 VVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSN 591
+ G LN + + GG + + + + G +VV R + + + S +Q +
Sbjct: 95 SIAKYGKGLNLRTISVFGGVRIPSQVNRFKRGADIVVATPRRLVDLLKVK-AFSLEQVKH 153
Query: 592 FWFLMKADEMLSRGFKGQI 648
F + +AD ++S G ++
Sbjct: 154 F-VMDEADRLVSMGIVAEL 171
>UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase RhlE;
n=1; Campylobacter fetus subsp. fetus 82-40|Rep:
Putative ATP-dependent RNA helicase RhlE - Campylobacter
fetus subsp. fetus (strain 82-40)
Length = 624
Score = 65.3 bits (152), Expect = 2e-09
Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR-----ECQALILAPTRELAQQIQKV 414
A +QG+D++A A++GTGKTA F++ IL+++ + R + + L+L PTRELA Q+ +
Sbjct: 34 AIMQGKDILAGARTGTGKTAAFALPILEKLSSKERNKKRPQTRVLVLVPTRELANQVTQN 93
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
+ + L K GG + I+ L++G+ +VV
Sbjct: 94 IKSYAKKLPFKTLPVFGGVSSYPQIQALKSGIDIVV 129
>UniRef50_Q9LUW5 Cluster: DEAD-box ATP-dependent RNA helicase 53;
n=14; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 53 - Arabidopsis thaliana (Mouse-ear cress)
Length = 616
Score = 65.3 bits (152), Expect = 2e-09
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVV 417
++GRD+I +A++GTGKT F I I+ +I R L+LAPTRELA+Q++K
Sbjct: 139 MEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEF 198
Query: 418 IALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFW 597
L+ C GGT + + +RQL+ GV + VG I + + A F
Sbjct: 199 RESAPSLDTIC--LYGGTPIGQQMRQLDYGVDVAVGTPGRVIDL--MKRGALNLSEVQFV 254
Query: 598 FLMKADEMLSRGF 636
L +AD+ML GF
Sbjct: 255 VLDEADQMLQVGF 267
>UniRef50_Q8L4E9 Cluster: DEAD-box ATP-dependent RNA helicase 36;
n=7; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
36 - Oryza sativa subsp. japonica (Rice)
Length = 501
Score = 65.3 bits (152), Expect = 2e-09
Identities = 33/71 (46%), Positives = 46/71 (64%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++GRDV+ A++G+GKTA F++ IL ++ AL LAPTRELA Q+ + ALG
Sbjct: 112 LEGRDVLGIAETGSGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQFRALGAP 171
Query: 436 LNAKCHACIGG 468
L +C A IGG
Sbjct: 172 LGLRCLAAIGG 182
>UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=3;
Candidatus Phytoplasma|Rep: Superfamily II DNA and RNA
helicase - Onion yellows phytoplasma
Length = 552
Score = 64.9 bits (151), Expect = 2e-09
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALGD 432
I+G DVI QAQ+GTGKT F I I+++I+ I++ Q+LIL PTREL Q+ +++ L
Sbjct: 38 IKGHDVIGQAQTGTGKTFAFGIPIIEKIEPKIQKTQSLILCPTRELTLQVYEELKKLLRF 97
Query: 433 HLNAKCHACIGGTNVREDIRQLENGVMLVV 522
+ + GG + + R LE L++
Sbjct: 98 YQEIRIAVVYGGESYTKQFRALEAKPHLII 127
>UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase
protein; n=1; Spiroplasma citri|Rep: Putative
atp-dependent rna helicase protein - Spiroplasma citri
Length = 443
Score = 64.9 bits (151), Expect = 2e-09
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 1/129 (0%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ +D+I ++ +GTGKT F + ILQ ++T +++ QA+IL PT ELA QI + V +
Sbjct: 36 LNSQDIIGKSHTGTGKTVAFIVPILQNLNTHLKQPQAIILCPTHELASQIIEQVRKFATY 95
Query: 436 LNAKCHACI-GGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKA 612
L I GG++++ I L ++V R I R + L +A
Sbjct: 96 LEGVNATLICGGSHIQRQIYALRKSNIIVGTPGRIADHI--NRKTLRLDKIKTI-VLDEA 152
Query: 613 DEMLSRGFK 639
DEML GFK
Sbjct: 153 DEMLKMGFK 161
>UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Firmicutes|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 484
Score = 64.9 bits (151), Expect = 2e-09
Identities = 43/133 (32%), Positives = 69/133 (51%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 429
A ++ +D+I ++Q+G+GKTA F+I I Q +D + QAL+L PTRELA Q+++ + +G
Sbjct: 37 AILEHKDIIVKSQTGSGKTAAFAIPICQLVDWDENKPQALVLVPTRELAIQVKEDMFNIG 96
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMK 609
K A G ++L+ +VVG I + Q + + +
Sbjct: 97 RFKRLKVAAVYGKAPFYHQEKELKQKTHVVVGTPGRIIDHMEKGTFDTSQ--IKYLVIDE 154
Query: 610 ADEMLSRGFKGQI 648
ADEM + GF QI
Sbjct: 155 ADEMFNMGFVDQI 167
>UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH box
family protein; n=16; Staphylococcus|Rep: ATP-dependent
RNA helicase DEAD/DEAH box family protein -
Staphylococcus aureus (strain Newman)
Length = 448
Score = 64.9 bits (151), Expect = 2e-09
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = +1
Query: 268 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD-HLNA 444
++I Q+Q+GTGK+ F + ++Q ID+ I+E QA+++APTRELAQQ+ L
Sbjct: 43 NLIGQSQTGTGKSHAFLLPLMQLIDSEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGV 102
Query: 445 KCHACIGGTNVREDIRQLENGVMLVVG 525
IGGT++ +D ++ L++G
Sbjct: 103 SVKVFIGGTDIEKDRQRCNAQPQLIIG 129
>UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila
melanogaster|Rep: CG6539-PA - Drosophila melanogaster
(Fruit fly)
Length = 1028
Score = 64.9 bits (151), Expect = 2e-09
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +1
Query: 268 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL-GDHLNA 444
D+I Q++SGTGKT + I+++Q + +I + A+I+ PTRELA Q+Q L +
Sbjct: 64 DLIIQSKSGTGKTLIYVIAVVQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDF 123
Query: 445 KCHACIGGTNVREDIRQLENGVMLV 519
KC A IGGT+V +D +++ +++
Sbjct: 124 KCSAFIGGTDVAKDRKRMNESRVII 148
>UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog;
n=20; Pasteurellaceae|Rep: Cold-shock DEAD box protein A
homolog - Haemophilus influenzae
Length = 613
Score = 64.9 bits (151), Expect = 2e-09
Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ G DV+ AQ+G+GKTA F++ +L QID S + Q L++APTRELA Q+ +
Sbjct: 40 LNGNDVLGMAQTGSGKTAAFALPLLAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKY 99
Query: 436 L-NAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKA 612
+ GG +R L+ G +VVG + I R + + F L +A
Sbjct: 100 AQGTRIVTLYGGQRYDIQLRALKQGAQVVVG-TPGRILDHIRRGTLNLSE-LRFIVLDEA 157
Query: 613 DEMLSRGF 636
DEML GF
Sbjct: 158 DEMLRMGF 165
Score = 33.9 bits (74), Expect = 4.9
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 155 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
TF+D+ L E +L+ + GFE PS IQQ I
Sbjct: 6 TFNDLGLPEFILKAVSDLGFETPSPIQQSCI 36
>UniRef50_Q5KBP5 Cluster: ATP-dependent RNA helicase DBP5; n=3;
Filobasidiella neoformans|Rep: ATP-dependent RNA
helicase DBP5 - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 546
Score = 64.9 bits (151), Expect = 2e-09
Identities = 30/69 (43%), Positives = 48/69 (69%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 444
R++I Q+QSGTGKTA F++++L ++D +I QA+ +AP+RELA+QIQ+V+ +G
Sbjct: 188 RNLIGQSQSGTGKTAAFTLNMLSRVDPTIPTPQAICIAPSRELARQIQEVIDQIGQFTQV 247
Query: 445 KCHACIGGT 471
I G+
Sbjct: 248 GTFLAIPGS 256
Score = 44.0 bits (99), Expect = 0.005
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +2
Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
V++F ++NL E+L++GI A GF+KPS IQ++A+
Sbjct: 147 VQSFKELNLHEDLMKGIIAAGFQKPSKIQEKAL 179
>UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=2; Alteromonadales|Rep: ATP-dependent RNA
helicase, DEAD box family - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 399
Score = 64.5 bits (150), Expect = 3e-09
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKV 414
A I G D++ AQ+GTGKTA FS+ I+ + ID + ++LIL PTRELA QI +
Sbjct: 35 ALINGNDLLGIAQTGTGKTAAFSLPIINKFGRNKIDIKAKSTRSLILTPTRELASQIMQN 94
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
+ D L K GG + + +E G+ ++V
Sbjct: 95 IDDYSDGLGLKTKVVYGGVGRQAQVDSIELGLDILV 130
>UniRef50_A4B385 Cluster: ATP-dependent RNA helicase, DEAD box
family protein; n=2; Proteobacteria|Rep: ATP-dependent
RNA helicase, DEAD box family protein - Alteromonas
macleodii 'Deep ecotype'
Length = 441
Score = 64.5 bits (150), Expect = 3e-09
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSIS----ILQQIDTSIRECQALILAPTRELAQQIQKVVIA 423
IQG+D+IA +++G+GKT F + ++ Q S ++ +ALILAPTRELA+Q+ +
Sbjct: 36 IQGKDIIASSKTGSGKTFAFLVPAINRLMAQKALSRQDPRALILAPTRELAKQVFIEAKS 95
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
+ LN C +GG N + ++ L ++VG
Sbjct: 96 MCTGLNLTCSLIVGGENYNDQVKALRRNPHIIVG 129
>UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3;
Thermoprotei|Rep: Superfamily II helicase - Cenarchaeum
symbiosum
Length = 434
Score = 64.5 bits (150), Expect = 3e-09
Identities = 36/89 (40%), Positives = 52/89 (58%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ GRDV+ QA +GTGKT +SIS+LQ+I Q LI+APTRELA QI + V +
Sbjct: 37 LTGRDVVGQAHTGTGKTGAYSISMLQEIKEG-GGIQGLIVAPTRELAVQITEEVKKFAKY 95
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVV 522
+ A GG ++ + L+ G ++V
Sbjct: 96 TKVRPVAIYGGQSMGVQLDALKRGAEILV 124
>UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=23;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - Bradyrhizobium japonicum
Length = 530
Score = 64.1 bits (149), Expect = 4e-09
Identities = 45/136 (33%), Positives = 66/136 (48%), Gaps = 5/136 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKVVI 420
+ GRDV+ AQ+GTGKTA+F++ IL + I + + L+L+PTREL+ QI
Sbjct: 51 LTGRDVVGIAQTGTGKTASFALPILHRLLEHRIKPQPKTTRVLVLSPTRELSGQILDSFN 110
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWF 600
A G H+ IGG + +R L GV ++V + + + F
Sbjct: 111 AYGRHIRLSSTLAIGGVPMGRQVRSLMQGVEVLVATPGRLLDL--VQSNGLKLGSVEFLV 168
Query: 601 LMKADEMLSRGFKGQI 648
L +AD ML GF I
Sbjct: 169 LDEADRMLDMGFINDI 184
>UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1;
uncultured candidate division OP8 bacterium|Rep:
Putative uncharacterized protein - uncultured candidate
division OP8 bacterium
Length = 453
Score = 64.1 bits (149), Expect = 4e-09
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQ-IDTSIRECQALILAPTRELAQQIQKVVIALGD 432
+ GRDV+A A +G+GKTA F + IL Q ID +AL++ PTRELA QI + + L
Sbjct: 36 MSGRDVMASAVTGSGKTAAFLLPILHQLIDRPRGTTRALVITPTRELAAQILEDLNDLAV 95
Query: 433 HLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
H A GG ++R GV +++G
Sbjct: 96 HTPISAAAVFGGVSIRPQEHAFRRGVDVLIG 126
>UniRef50_A3ZXX1 Cluster: ATP-dependent RNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent RNA helicase -
Blastopirellula marina DSM 3645
Length = 447
Score = 64.1 bits (149), Expect = 4e-09
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID---TSIREC--QALILAPTRELAQQIQKVVI 420
++G D+I AQ+GTGKTA F++ IL Q+D + C Q L+L+PTRELA QI +
Sbjct: 31 LEGSDLIGCAQTGTGKTAAFALPILNQLDLDRSRADACAPQVLVLSPTRELAVQIAQSFN 90
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWF 600
G ++ + GG +R L+ GV + + + + + Q F
Sbjct: 91 VYGRNVKFRLTTIFGGVGQNPQVRALKRGVHVAIATPGRLLDL-MDQGYVDLSQAKTF-V 148
Query: 601 LMKADEMLSRGF 636
L +AD ML GF
Sbjct: 149 LDEADRMLDMGF 160
>UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1;
Clostridium cellulolyticum H10|Rep: DEAD/DEAH box
helicase-like - Clostridium cellulolyticum H10
Length = 542
Score = 64.1 bits (149), Expect = 4e-09
Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ D+I +++G+GKTA F +SILQ + Q LIL P RELA Q+ + + +
Sbjct: 38 LNNEDLIVMSKTGSGKTAVFGVSILQLTNPEEAGPQGLILTPARELAVQVDNDIRKMAKY 97
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKAD 615
L K A G N+ + + L GV +V G + ++ + S + F L +AD
Sbjct: 98 LKHKTTAIYGQHNINLETQILNKGVSIVTG-TPGRVFDHISHGTLSTKN-IRFLVLDEAD 155
Query: 616 EMLSRGFKGQ----IP*CPQDVVSLMFKS 690
ML GF Q + P++ ++L+F +
Sbjct: 156 RMLDMGFLDQVVRIVKTLPKERITLLFSA 184
>UniRef50_A0KZD5 Cluster: DEAD/DEAH box helicase domain protein;
n=19; Alteromonadales|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain ANA-3)
Length = 487
Score = 64.1 bits (149), Expect = 4e-09
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE---CQALILAPTRELAQQIQKVVIAL 426
++G+D++A AQ+GTGKTA+F++ +L+Q+ + +AL++ PTRELA Q+ +
Sbjct: 57 LEGKDIMACAQTGTGKTASFALPVLEQLSKQPNDKPLLRALVMTPTRELAIQVCANIQKY 116
Query: 427 GDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
L K A GG N+ + +E GV ++V
Sbjct: 117 SQFLPLKTLAVYGGANMNPQRKGVEQGVDILV 148
>UniRef50_Q5BXU1 Cluster: SJCHGC08663 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC08663 protein - Schistosoma
japonicum (Blood fluke)
Length = 193
Score = 64.1 bits (149), Expect = 4e-09
Identities = 29/50 (58%), Positives = 40/50 (80%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 414
+++IAQ+QSGTGKTATF +++L +I T + CQ L +APTRELA QI+ V
Sbjct: 116 QNMIAQSQSGTGKTATFLLAMLSRIRTDVHYCQCLCMAPTRELALQIESV 165
Score = 47.2 bits (107), Expect = 5e-04
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = +2
Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
V TF ++NLKE LL+GI A GF KPS IQ+RA+
Sbjct: 75 VRTFQELNLKEPLLKGIAAMGFYKPSTIQERAL 107
>UniRef50_Q22308 Cluster: Putative uncharacterized protein; n=7;
Bilateria|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 1022
Score = 64.1 bits (149), Expect = 4e-09
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Frame = +1
Query: 268 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 444
++IAQAQSGTGKTA F +++L +ID ++ Q + LAPT ELA+QI +VV +G + N
Sbjct: 659 NLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNL 718
Query: 445 KCHACIGGTNV 477
K H I G N+
Sbjct: 719 KIHYAIKGGNM 729
>UniRef50_P20447 Cluster: ATP-dependent RNA helicase DBP3; n=20;
Ascomycota|Rep: ATP-dependent RNA helicase DBP3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 523
Score = 64.1 bits (149), Expect = 4e-09
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALG 429
+ G+DV+ A++G+GKT F + + + D R Q L+++PTRELA QI +I L
Sbjct: 147 LSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLT 206
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMK 609
D + +C GG E QL+ ++V R + Q N+ L +
Sbjct: 207 DKVGMQCCCVYGGVPKDEQRIQLKKSQVVVATPGRLLDLL--QEGSVDLSQ-VNYLVLDE 263
Query: 610 ADEMLSRGFKGQI 648
AD ML +GF+ I
Sbjct: 264 ADRMLEKGFEEDI 276
>UniRef50_Q2S6I0 Cluster: ATP-dependent RNA helicase; n=1;
Salinibacter ruber DSM 13855|Rep: ATP-dependent RNA
helicase - Salinibacter ruber (strain DSM 13855)
Length = 478
Score = 63.7 bits (148), Expect = 5e-09
Identities = 53/154 (34%), Positives = 76/154 (49%), Gaps = 9/154 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI----QKVVIA 423
+ GRD+I Q+Q+G+GKT F + + ++ E Q LIL PTRELA+QI +++ IA
Sbjct: 76 LDGRDLIVQSQTGSGKTGAFLLPLFDLVNPDKEEQQVLILTPTRELARQIHEEFEQMKIA 135
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLENGVMLVVG-HSRSCIWI**TRPCASCQQPSNFWF 600
+ GG + I L+NG +V+G R I AS +
Sbjct: 136 TPRTNRMEAVLIYGGVGYQPQIDGLKNGAQVVIGTPGRILDHIKKDNFDASTLR---MLV 192
Query: 601 LMKADEMLSRGF----KGQIP*CPQDVVSLMFKS 690
L +ADEMLS GF K + P D VS M+ +
Sbjct: 193 LDEADEMLSMGFYPDMKDIVEHVPGDRVSYMYSA 226
>UniRef50_Q12B10 Cluster: DEAD/DEAH box helicase-like; n=13;
Proteobacteria|Rep: DEAD/DEAH box helicase-like -
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Length = 422
Score = 63.7 bits (148), Expect = 5e-09
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDT----SIRECQALILAPTRELAQQIQKVV 417
A + GRDV+ AQ+G+GKTA F++ +LQQ+ + R + LIL PTRELA Q+ + +
Sbjct: 38 AILLGRDVVGSAQTGSGKTAAFALPMLQQLANAPTGTPRPTRGLILVPTRELAAQVGEAI 97
Query: 418 IALGDHL--NAKCHACIGGTNVREDIRQLENGVMLVV 522
+L K GG ++ + L G +VV
Sbjct: 98 AGFAKYLPQRVKVAVVFGGVSINPQMMNLRGGADIVV 134
>UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=5;
Bacteria|Rep: Possible ATP-dependent RNA helicase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 388
Score = 63.7 bits (148), Expect = 5e-09
Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDT----SIRECQALILAPTRELAQQIQKVV 417
A ++G+D++ AQ+G+GKTA+F + ILQ + T R AL+L PTRELA Q+ +V
Sbjct: 42 AILKGKDILGIAQTGSGKTASFVLPILQMLQTKPLGKNRHINALVLVPTRELAVQVGQVF 101
Query: 418 IALGDHL--NAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSN 591
A + L K A GG ++ + QL+ +L+ R + A
Sbjct: 102 QAFSNALPNKIKSLAVYGGVSINPQMIQLQGVEILIATPGRLLDLV---DSKAVYLSDVE 158
Query: 592 FWFLMKADEMLSRGFKGQI 648
L +AD+ML+ GFK ++
Sbjct: 159 VLVLDEADKMLNLGFKEEM 177
>UniRef50_Q0AR94 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Maricaulis maris (strain MCS10)
Length = 787
Score = 63.7 bits (148), Expect = 5e-09
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
Frame = +1
Query: 259 QGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQ---ALILAPTRELAQQIQKVVI 420
+GRD++ AQ+G+GKTA F +++ + + D ALI+APTRELA Q+Q+ +
Sbjct: 36 EGRDLLVSAQTGSGKTAAFGMAMAKTLLGDDDQFNRPDLPMALIVAPTRELALQVQRELA 95
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
L + +C+GG + R + + LE G +VVG
Sbjct: 96 WLYGEARGQIASCVGGMDPRAERKALERGCHIVVG 130
>UniRef50_Q2LZJ8 Cluster: GA19670-PA; n=1; Drosophila
pseudoobscura|Rep: GA19670-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 1007
Score = 63.7 bits (148), Expect = 5e-09
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ G D++ Q++SGTGKT + ++ LQ S + + L++ PTRELA Q+ + LG+
Sbjct: 60 LTGMDLLVQSKSGTGKTLIYVVTALQMCSLSTQHPEVLVILPTRELALQVHDIFRFLGEK 119
Query: 436 LNA-KCHACIGGTNVREDIRQLEN 504
L + K + +GGT+V D +L N
Sbjct: 120 LRSFKVSSFMGGTDVTRDREKLRN 143
>UniRef50_Q55RL6 Cluster: Putative uncharacterized protein; n=2;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 606
Score = 63.7 bits (148), Expect = 5e-09
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 6/89 (6%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA----LILAPTRELAQQIQKVVIA 423
+ G DV+AQA++GTGKT F + ++Q++ ++ A LIL+PTRELAQQI +V
Sbjct: 102 LAGDDVLAQAKTGTGKTLAFLVPVVQRLLSAPMPPSALTSILILSPTRELAQQINEVAER 161
Query: 424 LGDHLNAK--CHACIGGTNVREDIRQLEN 504
+ L+ K + +GGTN+ DI+ L++
Sbjct: 162 MSTALSKKFGTRSVVGGTNMDRDIKNLKS 190
>UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3;
Thermoplasma|Rep: ATP-dependent RNA helicase -
Thermoplasma volcanium
Length = 373
Score = 63.7 bits (148), Expect = 5e-09
Identities = 41/127 (32%), Positives = 68/127 (53%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ G D++ ++++G+GKTA + I I+ + +ALIL PTRELA Q+ KV ALG
Sbjct: 37 LAGSDLVVRSKTGSGKTAAYLIPIINNTAKE-KGIRALILLPTRELAVQVAKVSEALGKR 95
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKAD 615
+ GG ++ + I + G ++VG + + R + + S ++ L +AD
Sbjct: 96 SGIRTVVVYGGVSINKQIELILRGANIIVGTPGRTLDL-IDRGILNFDKVS-YFVLDEAD 153
Query: 616 EMLSRGF 636
EML GF
Sbjct: 154 EMLDMGF 160
>UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Xylella
fastidiosa
Length = 614
Score = 63.3 bits (147), Expect = 7e-09
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 429
A + GRDV+ QAQ+GTGKTA F++ +L + + + Q L+LAPTRELA Q+ +
Sbjct: 48 ALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVKPQVLVLAPTRELAIQVAEAFQRYA 107
Query: 430 DHLNA-KCHACIGGTNVREDIRQLENGVMLVVG 525
++ + GG + + + L+ GV ++VG
Sbjct: 108 ASISGFRVLPVYGGQSYGQQLAALKRGVHVIVG 140
>UniRef50_Q1GJ43 Cluster: DEAD/DEAH box helicase-like protein; n=30;
cellular organisms|Rep: DEAD/DEAH box helicase-like
protein - Silicibacter sp. (strain TM1040)
Length = 710
Score = 63.3 bits (147), Expect = 7e-09
Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 13/162 (8%)
Frame = +1
Query: 244 NNAFIQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQ---ALILAPTRELAQQI 405
+N + G D++ AQ+G+GKT F ++I I D + AL++APTRELA Q+
Sbjct: 33 SNPELAGADLLVSAQTGSGKTVGFGLAIAPTILGEDGTFERAASPLALVIAPTRELALQV 92
Query: 406 QKVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV---GHSRSCIWI**TRPCASC 576
++ + L A +C+GG ++R++ R LE G +VV G R I TR
Sbjct: 93 KRELSWLYGDAGAVLASCVGGMDMRDERRALERGAHIVVATPGRLRDHI----TRGSIDL 148
Query: 577 QQPSNFWFLMKADEMLSRGFKGQ----IP*CPQDVVSLMFKS 690
+ L +ADEML GF+ + P+D +L+F +
Sbjct: 149 SGVAAV-VLDEADEMLDLGFREDLEFILEETPEDRQTLLFSA 189
>UniRef50_O07897 Cluster: Heat resistant RNA dependent ATPase; n=3;
Thermus thermophilus|Rep: Heat resistant RNA dependent
ATPase - Thermus thermophilus
Length = 510
Score = 63.3 bits (147), Expect = 7e-09
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSI---RECQALILAPTRELAQQIQKVVIAL 426
++G+D+I QA++GTGKT F++ I +++ S R+ +AL+L PTRELA Q+ + A+
Sbjct: 36 LEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAV 95
Query: 427 GDHLNAKCHACIGGTNVREDIRQLENGVMLVVG-HSRSCIWI**TRPCASCQQPSNFWFL 603
HL K A GGT + L G VV R+ ++ R L
Sbjct: 96 APHL--KVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYL---RQGVLDLSRVEVAVL 150
Query: 604 MKADEMLSRGFKGQI 648
+ADEMLS GF+ ++
Sbjct: 151 DEADEMLSMGFEEEV 165
>UniRef50_A6PQ62 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Victivallis vadensis ATCC BAA-548|Rep: DEAD/DEAH
box helicase domain protein - Victivallis vadensis ATCC
BAA-548
Length = 542
Score = 63.3 bits (147), Expect = 7e-09
Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Frame = +1
Query: 223 FCNP--ATRNNAFIQGRDVIAQAQSGTGKTATFSISILQQ-IDTSIRE----C-QALILA 378
+C P A A ++GRD+ +AQ+GTGKTA F +++ + ++ + E C +AL+LA
Sbjct: 147 YCTPIQALTLPALLEGRDLAGKAQTGTGKTAAFLLAVFTRLLNHPLEERKPGCPRALVLA 206
Query: 379 PTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
PTRELA QIQK L GG + + R LE V LV+G
Sbjct: 207 PTRELAMQIQKDAEVLEIFTGLTSVVVFGGMDHEKQRRSLEQPVDLVIG 255
>UniRef50_A3J7I3 Cluster: ATP-independent RNA helicase; n=5;
Bacteroidetes|Rep: ATP-independent RNA helicase -
Flavobacteria bacterium BAL38
Length = 463
Score = 63.3 bits (147), Expect = 7e-09
Identities = 29/93 (31%), Positives = 54/93 (58%)
Frame = +1
Query: 247 NAFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL 426
+A ++ +++ + +G+GKT F + I Q ++ ++ Q LIL P+REL QI++V +
Sbjct: 28 SAILKENNILLLSPTGSGKTLAFLLPIFQMMEEEVKGVQCLILVPSRELGLQIEQVWKKM 87
Query: 427 GDHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
G H K + C GG ++ + + L N L++G
Sbjct: 88 GTHF--KVNTCYGGHSIETEFKNLSNPPALLIG 118
>UniRef50_A3I404 Cluster: Putative uncharacterized protein; n=1;
Bacillus sp. B14905|Rep: Putative uncharacterized
protein - Bacillus sp. B14905
Length = 382
Score = 63.3 bits (147), Expect = 7e-09
Identities = 29/92 (31%), Positives = 56/92 (60%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 429
A ++G+D++A++ +G+GKT + + +L +++ + ++ Q LI+AP++ELA QI +V+
Sbjct: 30 AMLEGKDIVAESPTGSGKTLAYVLPLLNKVNGAKKQTQGLIVAPSQELAMQIVEVIREWT 89
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
+ IGG N I +L+ +VVG
Sbjct: 90 AGTDITVQQLIGGANSARQIEKLKKKPTIVVG 121
>UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Algoriphagus sp. PR1|Rep: DEAD/DEAH box helicase-like
protein - Algoriphagus sp. PR1
Length = 399
Score = 63.3 bits (147), Expect = 7e-09
Identities = 32/92 (34%), Positives = 53/92 (57%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 429
A ++GRD++ + +G+GKT F I I++ + + ALI+ PTRELA QI + +L
Sbjct: 88 ALLEGRDLLGISNTGSGKTGAFLIPIIEHALKNPGQFTALIVTPTRELALQIDQEFKSLS 147
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
+ IGGTN+ D++ L + ++VG
Sbjct: 148 KGMRLHSATFIGGTNINTDMKVLSRKLHVIVG 179
>UniRef50_A5KB15 Cluster: ATP-dependent RNA helicase, putative; n=1;
Plasmodium vivax|Rep: ATP-dependent RNA helicase,
putative - Plasmodium vivax
Length = 1341
Score = 63.3 bits (147), Expect = 7e-09
Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 6/139 (4%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKV 414
A + GRDVIA A++G+GKT ++ +++ + +R A+IL PTREL++Q++
Sbjct: 702 ALMCGRDVIAIAETGSGKTLSYLFPLIRHVLHQPPLRNNDGPIAIILTPTRELSKQVKSE 761
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPC-ASCQQPSN 591
+N + A GG+N+ + L+ GV ++VG I I C + +
Sbjct: 762 ARPYCQAVNLRILAVYGGSNIGTQLNTLKRGVEILVGTPGRIIDILTISNCKVTNLNRVS 821
Query: 592 FWFLMKADEMLSRGFKGQI 648
F L +AD +L GF+ QI
Sbjct: 822 FVVLDEADRLLDLGFESQI 840
>UniRef50_Q1E273 Cluster: Putative uncharacterized protein; n=2;
Onygenales|Rep: Putative uncharacterized protein -
Coccidioides immitis
Length = 722
Score = 63.3 bits (147), Expect = 7e-09
Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 16/150 (10%)
Frame = +1
Query: 247 NAFIQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQ-----------ALILAPT 384
N + G+DV+AQA++GTGKT F + ++Q+I D S+R Q A++++PT
Sbjct: 116 NHTLNGKDVLAQAKTGTGKTLAFLVPVIQKIIRDDPSLRTGQKFRQRGGSNIRAVVISPT 175
Query: 385 RELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE-NGVMLVVGHSRSCIWI**TR 561
RELA+QI + + + +GGT E +R+++ G L+VG I I +
Sbjct: 176 RELAEQIAEEAQKIARFTGVQVRTAVGGTRKIEGLRKIQREGCHLLVGTPGRLIDI-FSD 234
Query: 562 PCASCQQPSNFWFLM-KADEMLSRGFKGQI 648
P + P+ F++ +AD +L GF I
Sbjct: 235 PRSGIAAPNLKAFVLDEADRLLDDGFAPSI 264
>UniRef50_P93008 Cluster: DEAD-box ATP-dependent RNA helicase 21;
n=8; Viridiplantae|Rep: DEAD-box ATP-dependent RNA
helicase 21 - Arabidopsis thaliana (Mouse-ear cress)
Length = 733
Score = 63.3 bits (147), Expect = 7e-09
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID-----TSIRECQ---ALILAPTRELAQQIQK 411
+Q RDVI A++G+GKTA F + +L I + E + A+++APTRELAQQI++
Sbjct: 348 LQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEE 407
Query: 412 VVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV---GHSRSCIWI**TRPCASCQQ 582
+ +L + + +GG ++ E ++ G +V+ G C+ R A Q
Sbjct: 408 ETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCL----ERRYAVLNQ 463
Query: 583 PSNFWFLMKADEMLSRGFKGQI 648
N+ L +AD M+ GF+ Q+
Sbjct: 464 -CNYVVLDEADRMIDMGFEPQV 484
>UniRef50_Q9NR30 Cluster: Nucleolar RNA helicase 2; n=51;
Euteleostomi|Rep: Nucleolar RNA helicase 2 - Homo
sapiens (Human)
Length = 783
Score = 63.3 bits (147), Expect = 7e-09
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 6/94 (6%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIA 423
G+D+IAQA++GTGKT +F+I +++++ + R Q L+LAPTRELA Q+ K
Sbjct: 223 GKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSD 282
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
+ L+ C GGT ++ NG+ ++VG
Sbjct: 283 ITKKLSVACF--YGGTPYGGQFERMRNGIDILVG 314
>UniRef50_Q9KKW0 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=19; Vibrio cholerae|Rep: ATP-dependent RNA
helicase, DEAD box family - Vibrio cholerae
Length = 428
Score = 62.9 bits (146), Expect = 9e-09
Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 429
A + G+DV A A +G+GKT + + +L+++ TS E QAL+L PTRELA Q+ +V+ +G
Sbjct: 55 AMLTGKDVFALANTGSGKTLAYGLPLLERLKTS-PEQQALVLVPTRELAMQVSEVLTHVG 113
Query: 430 DHLNAKCHACIGGTNVREDIRQL-ENGVMLVVGHSR 534
L GG + E L EN +LV R
Sbjct: 114 TALGLNTLCLCGGVDKTEQQNALAENPNILVATTGR 149
>UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2;
Gluconobacter oxydans|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 432
Score = 62.9 bits (146), Expect = 9e-09
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE-----CQALILAPTRELAQQIQKVVI 420
++GRD++ AQ+GTGKTA+F++ +L ++ + R + L+LAPTREL QI
Sbjct: 42 LEGRDLLGLAQTGTGKTASFALPLLHRLAATPRPAPKNGARVLVLAPTRELVSQIADGFE 101
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWF 600
+ H + GG + ++ LE GV ++V + + C Q +
Sbjct: 102 SFSRHQPVRVTTIFGGVSQVHQVKALEEGVDIIVAAPGRLLDLIEQGLCDLSQLET--LV 159
Query: 601 LMKADEMLSRGF 636
L +AD+ML GF
Sbjct: 160 LDEADQMLDMGF 171
>UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box
RNA-helicase; n=4; Gammaproteobacteria|Rep: Possible
ATP-dependent DEAD/DEAH box RNA-helicase - Psychrobacter
arcticum
Length = 567
Score = 62.9 bits (146), Expect = 9e-09
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID--TSI-RECQALILAPTRELAQQIQKVVIAL 426
+QGRD++ AQ+G+GKTA F I +L ++ TS + +ALIL PTRELAQQ+ V
Sbjct: 79 LQGRDLLLSAQTGSGKTAAFVIPVLDRLSRATSFDKLTKALILTPTRELAQQVHDSVRTY 138
Query: 427 G-DHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
D C +GG I L+ GV ++V
Sbjct: 139 SKDMRGLFCVPLVGGAPYNGQITALKKGVQVIV 171
>UniRef50_A0M3C7 Cluster: RhlE-like DEAD box family ATP-dependent
RNA helicase; n=4; Bacteroidetes|Rep: RhlE-like DEAD box
family ATP-dependent RNA helicase - Gramella forsetii
(strain KT0803)
Length = 455
Score = 62.9 bits (146), Expect = 9e-09
Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
Frame = +1
Query: 247 NAFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC-QALILAPTRELAQQIQKVVIA 423
++ + GRDV+ AQ+GTGKT + + +L+ + S ++ + LI+ PTREL Q+ + +
Sbjct: 41 SSIMSGRDVVGIAQTGTGKTFAYLLPLLRMLKYSEQKNPRILIMVPTRELVVQVVEEIEK 100
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFL 603
L ++N + GG N+ + L G+ +VV R ++ R + F +
Sbjct: 101 LAKYINLRVAGVYGGVNINTQHQDLMQGLDIVVATPRR-LYDLVLRRAVQLKSIQKF-VI 158
Query: 604 MKADEMLSRGFKGQI 648
+ D ML GFK Q+
Sbjct: 159 DEVDVMLDLGFKFQV 173
>UniRef50_Q019E9 Cluster: ATP-dependent RNA helicase; n=2;
Ostreococcus|Rep: ATP-dependent RNA helicase -
Ostreococcus tauri
Length = 683
Score = 62.9 bits (146), Expect = 9e-09
Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQIQK 411
+ G+DV+ +A++GTGKT FS+ +++++ R + ++LAPTRELA+Q++
Sbjct: 60 MDGQDVVGRARTGTGKTLAFSLPVIEKLLSNGRGSGGRGYRNPKCIVLAPTRELAKQVEN 119
Query: 412 VVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSN 591
+ L+ C GGT + + +L GV +VVG + + R A
Sbjct: 120 EIFITAPTLDTAC--VYGGTPIGQQESKLRRGVDIVVGTPGRIMDLMNRR--ALDLSEIE 175
Query: 592 FWFLMKADEMLSRGFKGQI 648
F L +AD+ML+ GF+ +
Sbjct: 176 FVVLDEADQMLNVGFEEDV 194
>UniRef50_Q53FI9 Cluster: Nucleolar protein GU2 variant; n=3;
Eutheria|Rep: Nucleolar protein GU2 variant - Homo
sapiens (Human)
Length = 363
Score = 62.9 bits (146), Expect = 9e-09
Identities = 34/95 (35%), Positives = 58/95 (61%), Gaps = 6/95 (6%)
Frame = +1
Query: 259 QGRDVIAQAQSGTGKTATFSISILQQIDTS------IRECQALILAPTRELAQQIQKVVI 420
+G+D+IAQA++GTGKT +F+I +++++ + R + L+LAPT ELA Q+ K
Sbjct: 173 EGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTGELANQVAKDFK 232
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
+ L+ C GGT+ + I + NG+ ++VG
Sbjct: 233 DITRKLSVACF--YGGTSYQSQINHIRNGIDILVG 265
>UniRef50_Q8EJQ5 Cluster: ATP-dependent RNA helicase rhlB; n=62;
Gammaproteobacteria|Rep: ATP-dependent RNA helicase rhlB
- Shewanella oneidensis
Length = 439
Score = 62.9 bits (146), Expect = 9e-09
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Frame = +1
Query: 223 FCNP--ATRNNAFIQGRDVIAQAQSGTGKTATFSISILQQIDTS-------IRECQALIL 375
FC P A +Q +D+ QAQ+GTGKT F ++ + +S + + +A+I+
Sbjct: 31 FCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSSSIPEGRQLNQPRAIIM 90
Query: 376 APTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
APTRELA QI K I L H K GG + + L+ GV +++G
Sbjct: 91 APTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLDQGVDILIG 140
>UniRef50_Q9HXE5 Cluster: ATP-dependent RNA helicase rhlB; n=22;
Gammaproteobacteria|Rep: ATP-dependent RNA helicase rhlB
- Pseudomonas aeruginosa
Length = 397
Score = 62.9 bits (146), Expect = 9e-09
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPTRELAQQIQKV 414
++G+D I +AQ+GTGKTA F ISI+ Q+ + + E +ALI+APTREL QI K
Sbjct: 44 LRGQDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKD 103
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLE 501
AL + +GG + + ++QLE
Sbjct: 104 AAALTKYTGLNVMTFVGGMDFDKQLKQLE 132
>UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;
n=27; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
15 - Arabidopsis thaliana (Mouse-ear cress)
Length = 427
Score = 62.9 bits (146), Expect = 9e-09
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
I G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +
Sbjct: 81 ILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTY 140
Query: 436 L-NAKCHACIGGTNVR 480
L + K GG N++
Sbjct: 141 LPDTKVSVFYGGVNIK 156
>UniRef50_Q5KME7 Cluster: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5; n=1; Filobasidiella neoformans|Rep:
Pre-mRNA-processing ATP-dependent RNA helicase PRP5 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 1072
Score = 62.9 bits (146), Expect = 9e-09
Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQI----DTSIRECQ-ALILAPTRELAQQIQKV 414
A + GRDVI A++G+GKT F + +L+ + S E A++++PTRELA QI K
Sbjct: 436 AIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQRPVSGSEGPIAVVMSPTRELASQIYKE 495
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
LN + C+GG+++ EDI ++ G +V+
Sbjct: 496 CQPFLKVLNIRASCCVGGSSISEDIAAMKKGAEVVI 531
>UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase
MJ0669; n=11; cellular organisms|Rep: Probable
ATP-dependent RNA helicase MJ0669 - Methanococcus
jannaschii
Length = 367
Score = 62.9 bits (146), Expect = 9e-09
Identities = 40/123 (32%), Positives = 71/123 (57%)
Frame = +1
Query: 268 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 447
+++AQA++G+GKTA+F+I +++ ++ + +A+IL PTRELA Q+ + +L + N K
Sbjct: 46 NIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPTRELAIQVADEIESLKGNKNLK 104
Query: 448 CHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKADEMLS 627
GG + I+ L+N ++V R I R + + ++ L +ADEML+
Sbjct: 105 IAKIYGGKAIYPQIKALKNANIVVGTPGRILDHI--NRGTLNLKN-VKYFILDEADEMLN 161
Query: 628 RGF 636
GF
Sbjct: 162 MGF 164
>UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=30; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 481
Score = 62.5 bits (145), Expect = 1e-08
Identities = 38/131 (29%), Positives = 72/131 (54%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+Q +D++ ++Q+G+GKTA+F I + + ++ + QAL+L PTRELA Q+++ + +G
Sbjct: 39 LQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRF 98
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKAD 615
K A G + +L+ +VVG + + + S ++ + + +AD
Sbjct: 99 KRIKAAAIYGKSPFARQKLELKQKTHIVVG-TPGRVLDHIEKGTLSLER-LKYLVIDEAD 156
Query: 616 EMLSRGFKGQI 648
EML+ GF Q+
Sbjct: 157 EMLNMGFIDQV 167
>UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6;
Proteobacteria|Rep: ATP-independent RNA helicase -
Erwinia carotovora subsp. atroseptica (Pectobacterium
atrosepticum)
Length = 460
Score = 62.5 bits (145), Expect = 1e-08
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 429
A + G DV A+A++G+GKTA F I +L +I S QAL+L PTRELA Q+ K + L
Sbjct: 37 AVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSDFTTQALVLCPTRELADQVSKELRRLA 96
Query: 430 DHL-NAKCHACIGGTNVREDIRQLENGVMLVVG 525
N K GG + + + L + +VVG
Sbjct: 97 RFAQNIKILTLCGGQPMGQQLDSLVHAPHIVVG 129
>UniRef50_A1VA48 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Deltaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Desulfovibrio vulgaris subsp. vulgaris
(strain DP4)
Length = 577
Score = 62.5 bits (145), Expect = 1e-08
Identities = 31/88 (35%), Positives = 49/88 (55%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 441
GRD++ Q+++G+GKT F + +L+++D + QAL+L PTRELA Q++ L +
Sbjct: 74 GRDLMVQSRTGSGKTGAFLLPLLERLDPAEASTQALVLVPTRELALQVEHEARTLFEGTG 133
Query: 442 AKCHACIGGTNVREDIRQLENGVMLVVG 525
+ A GG + L G VVG
Sbjct: 134 LRVAAVYGGVGYGKQNDALREGAHFVVG 161
>UniRef50_Q7QQX6 Cluster: GLP_383_7421_6129; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_383_7421_6129 - Giardia lamblia ATCC
50803
Length = 430
Score = 62.5 bits (145), Expect = 1e-08
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-- 438
RDV+A+A++GTGKT +F I ILQ ++ + QAL+L TRELA Q KV L ++
Sbjct: 59 RDVVARAKNGTGKTGSFLIPILQMVNPAKDHIQALVLLHTRELAMQTAKVAKTLSKNMPD 118
Query: 439 -NAKCHACIGGTNVREDIRQLENGVMLVV 522
+ IGG ++ ED + ++V+
Sbjct: 119 VTGRIMCAIGGVSIAEDRERAREKPLVVL 147
>UniRef50_Q688Z4 Cluster: Putative uncharacterized protein; n=3;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 871
Score = 62.5 bits (145), Expect = 1e-08
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDT-SIRECQALILAPTRELAQQIQKVVIALGD 432
+ G+DV+A +++G+GKTA F I +LQ++ +AL+++PTRELA Q KVV LG
Sbjct: 59 MDGKDVVAMSRTGSGKTAAFVIPMLQKLKRRDTTGIRALMVSPTRELALQTFKVVKELGR 118
Query: 433 HLNAKCHACIGGTNVREDIRQL-ENGVMLVVGHSR 534
+C +GG + E + EN +L+ R
Sbjct: 119 FTGLRCACLVGGDQIEEQFSTIHENPDILLATPGR 153
>UniRef50_A4QQK0 Cluster: Putative uncharacterized protein; n=3;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 568
Score = 62.5 bits (145), Expect = 1e-08
Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
Frame = +1
Query: 235 ATRNNAFIQGRDVIAQAQSGTGKTATFSISILQQI----DTSIRECQALILAPTRELAQQ 402
AT + DV+AQA++GTGKT F + LQ + + + L+++PTRELA Q
Sbjct: 106 ATIRHLIADRGDVLAQAKTGTGKTIAFLLPALQTLLRRPSSRGNDVSVLVISPTRELALQ 165
Query: 403 IQKVVIALGDHL-NAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQ 579
I K AL L K IGGTN + R++ G +++G + + A
Sbjct: 166 IAKEAEALLQRLPQYKVCTAIGGTNKDAEQRRILRGCQILIGTPGRLMDHLEEQSVAEML 225
Query: 580 QPSNFWFLMKADEMLSRGFKGQI 648
Q + + L +AD +L GF Q+
Sbjct: 226 QSVDTFVLDEADRLLDMGFMPQL 248
>UniRef50_Q9BUQ8 Cluster: Probable ATP-dependent RNA helicase DDX23;
n=50; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX23 - Homo sapiens (Human)
Length = 820
Score = 62.5 bits (145), Expect = 1e-08
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDT-----SIRECQ----ALILAPTRELAQQIQ 408
+Q RD+I A++G+GKTA F I +L I T I E A+ILAPTRELAQQI+
Sbjct: 426 LQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIE 485
Query: 409 KVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPS 588
+ I G L + A IGG + + +L G +V+ I + R +
Sbjct: 486 EETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSR--C 543
Query: 589 NFWFLMKADEMLSRGFKGQI 648
+ L +AD M+ GF+ +
Sbjct: 544 TYVVLDEADRMIDMGFEPDV 563
>UniRef50_P20448 Cluster: ATP-dependent RNA helicase DBP4; n=13;
Saccharomycetales|Rep: ATP-dependent RNA helicase DBP4 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 770
Score = 62.5 bits (145), Expect = 1e-08
Identities = 31/94 (32%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVIA 423
+QG DV+A A++G+GKT F + +++++ T ALI++PTRELA QI +V+
Sbjct: 76 LQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTK 135
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
+G H + IGG +V+ ++ ++ + +++G
Sbjct: 136 IGSHTSFSAGLVIGGKDVKFELERISR-INILIG 168
>UniRef50_Q03YT1 Cluster: Superfamily II DNA and RNA helicase; n=1;
Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293|Rep: Superfamily II DNA and RNA helicase -
Leuconostoc mesenteroides subsp. mesenteroides (strain
ATCC 8293 /NCDO 523)
Length = 431
Score = 62.1 bits (144), Expect = 2e-08
Identities = 30/80 (37%), Positives = 47/80 (58%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 441
G + A +GTGKT F + +L +IDT+++ Q LILAP++ELA Q +V G+ +
Sbjct: 30 GDSIFGLAPTGTGKTLAFVLPVLSRIDTNLKRTQVLILAPSQELAMQTTQVAREWGNAVG 89
Query: 442 AKCHACIGGTNVREDIRQLE 501
A + IGG N R +++
Sbjct: 90 ASVASLIGGANGRRQADKIK 109
>UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 722
Score = 62.1 bits (144), Expect = 2e-08
Identities = 46/125 (36%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELA-QQIQKVVIALGDHLN 441
RDV+ AQ+GTGKTA F + +L +D R QAL+LAPTRELA Q Q +
Sbjct: 83 RDVVGIAQTGTGKTAAFGLPLLAIVDADERNVQALVLAPTRELAMQSAQAIEDFAARTAR 142
Query: 442 AKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKADEM 621
GG+ I L+ G +VVG I + A L +ADEM
Sbjct: 143 LDVVPVYGGSPYGPQIGALKRGAQVVVGTPGRVIDL--IEKGALDLSHVRMLVLDEADEM 200
Query: 622 LSRGF 636
L GF
Sbjct: 201 LRMGF 205
>UniRef50_A4RYJ1 Cluster: Predicted protein; n=3; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 407
Score = 62.1 bits (144), Expect = 2e-08
Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 10/98 (10%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL----- 426
G DVIAQA+SGTGKT TF + L+++D R QAL LAPTRE A Q + + +
Sbjct: 74 GCDVIAQAKSGTGKTMTFVVIALERVDAGRRRTQALALAPTRECAVQTHECFVEMIEKFK 133
Query: 427 ---GDHLNAKCHAC--IGGTNVREDIRQLENGVMLVVG 525
GD C +GG V+ED +L + +VVG
Sbjct: 134 DMDGD-ARGGIETCLLVGGLPVKEDRARLASQPHVVVG 170
>UniRef50_Q7QNT5 Cluster: GLP_88_2286_3572; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_88_2286_3572 - Giardia lamblia ATCC
50803
Length = 428
Score = 62.1 bits (144), Expect = 2e-08
Identities = 29/84 (34%), Positives = 47/84 (55%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
IQG+ + AQ+G+GKTA F IS+L ++ CQA+I++PT+EL+ Q +V+ LG
Sbjct: 38 IQGQSISVNAQTGSGKTAAFGISLLSLVNPQKSICQAVIISPTKELSNQTLEVINTLGTR 97
Query: 436 LNAKCHACIGGTNVREDIRQLENG 507
+ G +E ++ G
Sbjct: 98 SGIRGVCLTSGVMAKEQFEKITKG 121
>UniRef50_A4RHM4 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 617
Score = 62.1 bits (144), Expect = 2e-08
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 18/108 (16%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI---DTSIREC--------------QALILAPT 384
++G+D++AQA++GTGKT F I ++Q+I D S++E +A+I++PT
Sbjct: 13 LKGKDLVAQAKTGTGKTLAFLIPVIQKILDADPSLKEVSRGRPRRFAQRQSIKAIIISPT 72
Query: 385 RELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE-NGVMLVVG 525
RELA+QI K L +GGT RE +R++ G L+VG
Sbjct: 73 RELAEQIGKEATRLCQRNGVTVQTAVGGTGKRESLRRIHMEGCHLLVG 120
>UniRef50_Q6CZD9 Cluster: ATP-dependent RNA helicase rhlB; n=2;
Gammaproteobacteria|Rep: ATP-dependent RNA helicase rhlB
- Erwinia carotovora subsp. atroseptica (Pectobacterium
atrosepticum)
Length = 430
Score = 62.1 bits (144), Expect = 2e-08
Identities = 38/97 (39%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPTRELAQQIQKV 414
+ GRDV QAQ+GTGKT F S + + + +ALI+APTRELA QI
Sbjct: 44 LSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSD 103
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
AL K GG + ++ LENGV ++VG
Sbjct: 104 AEALSHLTGLKLGLAYGGDGYDKQLKVLENGVDILVG 140
>UniRef50_UPI0000E48294 Cluster: PREDICTED: similar to DEAD
(Asp-Glu-Ala-Asp) box polypeptide 21a; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
DEAD (Asp-Glu-Ala-Asp) box polypeptide 21a -
Strongylocentrotus purpuratus
Length = 657
Score = 61.7 bits (143), Expect = 2e-08
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISIL---QQI-DTSIRECQALILAPTRELAQQIQKVVIALG 429
G DVIAQA++GTGKT +F + ++ QQ S R+ L LAPTRELA+QI + A+G
Sbjct: 139 GFDVIAQARTGTGKTLSFVLPLVEKWQQFPQKSGRQPIILALAPTRELAKQISEYFEAIG 198
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
HL+ C GGT+ + G+ +VVG
Sbjct: 199 PHLSTTC--IYGGTSYWPQESAIRRGLDVVVG 228
>UniRef50_Q88NB7 Cluster: ATP-dependent RNA helicase rhlB; n=18;
Proteobacteria|Rep: ATP-dependent RNA helicase rhlB -
Pseudomonas putida (strain KT2440)
Length = 398
Score = 61.7 bits (143), Expect = 2e-08
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTS-------IRECQALILAPTRELAQQIQKV 414
++G+D I +AQ+GTGKTA F ISI+ Q+ + + E +ALI+APTREL QI K
Sbjct: 44 LRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKD 103
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLE 501
AL + + +GG + + ++ LE
Sbjct: 104 AAALTKYTGLNVMSFVGGMDFDKQLKALE 132
>UniRef50_O49289 Cluster: Putative DEAD-box ATP-dependent RNA
helicase 29; n=4; core eudicotyledons|Rep: Putative
DEAD-box ATP-dependent RNA helicase 29 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 845
Score = 61.7 bits (143), Expect = 2e-08
Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALG 429
+ G DV+A A++G+GKTA F I +L+++ + + +ALIL+PTR+LA+Q K LG
Sbjct: 63 LSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELG 122
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
+ + +GG ++ + +L G +++
Sbjct: 123 KFTDLRVSLLVGGDSMEDQFEELTKGPDVII 153
>UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4;
Leptospira|Rep: ATP-dependent RNA helicase - Leptospira
interrogans
Length = 521
Score = 61.3 bits (142), Expect = 3e-08
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++G+D+I AQ+GTGKTA F+I ++ ++ + QALIL PTREL Q+ + L +
Sbjct: 44 LKGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRELVIQVSEQFRKLIKY 103
Query: 436 L-NAKCHACIGGTNVREDIRQLENGVMLVV 522
N + GG + +R L +V+
Sbjct: 104 KGNFEVVPIYGGQEIERQLRALRKNPQIVI 133
>UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box
helicase, N-terminal; n=9; Bacteroidetes/Chlorobi
group|Rep: Helicase, C-terminal:DEAD/DEAH box helicase,
N-terminal - Chlorobium limicola DSM 245
Length = 499
Score = 61.3 bits (142), Expect = 3e-08
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDT-----SIRECQALILAPTRELAQQIQKVVI 420
+ G D++ AQ+GTGKTA F+I +LQ ++ R+ ++LI+ PTRELA QI +
Sbjct: 117 LDGNDLLGCAQTGTGKTAAFAIPVLQLLNAVKTNEKKRKIRSLIITPTRELAIQIGESFK 176
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWF 600
A G H GG N L+ G+ +++ + + + F+
Sbjct: 177 AYGRHTGLTSTVIFGGVNQNPQTASLQKGIDILIATPGRLLDL--MNQGHLHLRNIEFFV 234
Query: 601 LMKADEMLSRGF 636
L +AD ML GF
Sbjct: 235 LDEADRMLDMGF 246
>UniRef50_A3PFY9 Cluster: DEAD/DEAH box helicase domain protein;
n=10; Alphaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9)
Length = 793
Score = 61.3 bits (142), Expect = 3e-08
Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVV 417
+ GRD + AQ+G+GKT F I+I QI AL +APTRELA Q+ + +
Sbjct: 50 VAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTPIALAIAPTRELALQVAREL 109
Query: 418 IALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
L A C+GG + R + R L+ G +VVG
Sbjct: 110 GWLYGEAGAHIATCVGGMDYRTERRALDRGAHIVVG 145
>UniRef50_Q8I416 Cluster: ATP-dependent RNA helicase, putative; n=2;
Plasmodium|Rep: ATP-dependent RNA helicase, putative -
Plasmodium falciparum (isolate 3D7)
Length = 1490
Score = 61.3 bits (142), Expect = 3e-08
Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 6/139 (4%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKV 414
A + GRDVIA A++G+GKT ++ +++ + +R ++IL PTREL+ Q++
Sbjct: 756 ALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQEPLRNNDGPISIILTPTRELSIQVKNE 815
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPC-ASCQQPSN 591
+N + A GG+N+ ++ L+ GV ++VG I I C + +
Sbjct: 816 AKIYCKAVNIEILAVYGGSNIARQLKVLKKGVEILVGTPGRIIDILTISNCKVTNLNRVS 875
Query: 592 FWFLMKADEMLSRGFKGQI 648
F L +AD +L GF+ QI
Sbjct: 876 FVVLDEADRLLDLGFESQI 894
>UniRef50_Q54Y81 Cluster: Putative RNA helicase; n=2; Dictyostelium
discoideum|Rep: Putative RNA helicase - Dictyostelium
discoideum AX4
Length = 834
Score = 61.3 bits (142), Expect = 3e-08
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQIQK 411
+ GRD++ A++G+GKT F I +L I DT AL++APTREL QQI+K
Sbjct: 448 LTGRDILGIAETGSGKTCAFVIPMLIYISKQPRLTKDTEADGPYALVMAPTRELVQQIEK 507
Query: 412 VVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV---GHSRSCIWI**TRPCASCQQ 582
H + + +GG ++ + Q+ G +++ G C+ + Q
Sbjct: 508 ETRNFAQHFGFRVVSLVGGQSIEDQAYQVSKGCEIIIATPGRLNDCL----EKRYLVLNQ 563
Query: 583 PSNFWFLMKADEMLSRGFKGQI 648
N+ L +AD M+ GF+ Q+
Sbjct: 564 -CNYIVLDEADMMIDLGFEPQV 584
Score = 33.9 bits (74), Expect = 4.9
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
+ T+ + NL E+L I G+EKPS IQ ++I
Sbjct: 412 IRTWQESNLPREILEAIRQLGYEKPSPIQMQSI 444
>UniRef50_Q22MC1 Cluster: Type III restriction enzyme, res subunit
family protein; n=1; Tetrahymena thermophila SB210|Rep:
Type III restriction enzyme, res subunit family protein
- Tetrahymena thermophila SB210
Length = 440
Score = 61.3 bits (142), Expect = 3e-08
Identities = 32/90 (35%), Positives = 50/90 (55%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++ + VIA A++G+GKTATF+ ILQ + A++L RELA QI + G
Sbjct: 37 LRKQHVIANAETGSGKTATFAFPILQDLAKDPFGVFAIVLTANRELAMQISEQFTIFGSS 96
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
LN + +GG + + + +LE +VVG
Sbjct: 97 LNLRVSTLVGGVDFNKQLSELERIPHIVVG 126
>UniRef50_A0T1H5 Cluster: SF2-family helicase; n=6; Plasmodium|Rep:
SF2-family helicase - Plasmodium falciparum
Length = 490
Score = 61.3 bits (142), Expect = 3e-08
Identities = 42/147 (28%), Positives = 80/147 (54%), Gaps = 1/147 (0%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
IQG++VI +++G+GKT + SILQ+++ ++ +LIL PTREL QI + G
Sbjct: 105 IQGKNVIGSSETGSGKTICYCWSILQELNKNVYGIFSLILLPTRELVFQIIEQFHLYGSK 164
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVG-HSRSCIWI**TRPCASCQQPSNFWFLMKA 612
+ +CIGG ++ E + + ++VG R + + +C + F L +A
Sbjct: 165 IGVMILSCIGGFSLIEQRKSVMTKPHIIVGTPGRISDILESSIDIQNCFKRLRFLVLDEA 224
Query: 613 DEMLSRGFKGQIP*CPQDVVSLMFKSY 693
D +L + F+ ++ Q++++ + K+Y
Sbjct: 225 DLLLQKCFEDKL----QNILNNLPKNY 247
>UniRef50_P54475 Cluster: Probable ATP-dependent RNA helicase yqfR;
n=12; Bacillaceae|Rep: Probable ATP-dependent RNA
helicase yqfR - Bacillus subtilis
Length = 438
Score = 61.3 bits (142), Expect = 3e-08
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL- 426
A ++ VI Q+Q+GTGKT + + +L +ID + Q +I APTRELA QI + + +
Sbjct: 37 AVLKKESVIGQSQTGTGKTHAYLLPLLNKIDPAKDVVQVVITAPTRELANQIYQEALKIT 96
Query: 427 ----GDHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
G + +KC IGGT+ ++ I +L+ LVVG
Sbjct: 97 QGEEGSQIRSKCF--IGGTDKQKSIDKLKIQPHLVVG 131
>UniRef50_Q8L7S8 Cluster: DEAD-box ATP-dependent RNA helicase 3;
n=13; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 3 - Arabidopsis thaliana (Mouse-ear cress)
Length = 748
Score = 61.3 bits (142), Expect = 3e-08
Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 10/138 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILAPTRELAQQI 405
+QGRD+IA+A++GTGKT F I I++++ T+ R + L+LAPTRELA+Q+
Sbjct: 137 LQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQV 196
Query: 406 QKVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQP 585
+K + +L+ C GG + L GV +VVG I + R +
Sbjct: 197 EKEIKESAPYLSTVC--VYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGE-- 252
Query: 586 SNFWFLMKADEMLSRGFK 639
+ L +AD+ML+ GF+
Sbjct: 253 VEYLVLDEADQMLAVGFE 270
>UniRef50_A4RIF1 Cluster: ATP-dependent RNA helicase DBP5; n=7;
Ascomycota|Rep: ATP-dependent RNA helicase DBP5 -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 504
Score = 61.3 bits (142), Expect = 3e-08
Identities = 30/56 (53%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALG 429
R++IAQ+QSGTGKT F ++IL ++D + QAL LAP+RELA+QIQ V+ ++G
Sbjct: 136 RNMIAQSQSGTGKTGAFVVTILSRVDFNQPNQPQALALAPSRELARQIQSVIQSIG 191
>UniRef50_Q8YH70 Cluster: ATP-DEPENDENT RNA HELICASE RHLE; n=10;
Rhizobiales|Rep: ATP-DEPENDENT RNA HELICASE RHLE -
Brucella melitensis
Length = 535
Score = 60.9 bits (141), Expect = 4e-08
Identities = 32/94 (34%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVI 420
++G+D++ AQ+G+GKTA FS+ ILQ+I + +ALILAPTRELA QI++ +
Sbjct: 122 LEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQIEQTIR 181
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
+ + +GG + I+++ G+ +++
Sbjct: 182 NVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 215
>UniRef50_Q6A6U7 Cluster: ATP-dependent RNA helicase; n=3;
Actinomycetales|Rep: ATP-dependent RNA helicase -
Propionibacterium acnes
Length = 700
Score = 60.9 bits (141), Expect = 4e-08
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC---QALILAPTRELAQQIQKVVIAL 426
I GRDV+ +A +G+GKT F + +L ++ + RE +ALIL+PTRELA QI + +L
Sbjct: 264 IAGRDVLGRASTGSGKTLAFGVPLLSRLSATPREDNRPRALILSPTRELAMQIADALSSL 323
Query: 427 GDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
+ GG + + + GV LVV
Sbjct: 324 ASSMGLSTILIAGGMSYGPQTKAFKRGVDLVV 355
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 941,308,931
Number of Sequences: 1657284
Number of extensions: 21120609
Number of successful extensions: 60098
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 56193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59393
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 70914189703
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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