Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30515
(822 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 153 2e-38
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 141 9e-35
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 91 1e-19
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 67 2e-12
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 60 3e-10
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 60 3e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 59 7e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 59 7e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 56 5e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 55 1e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 55 1e-08
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 54 2e-08
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 53 4e-08
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 52 1e-07
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 51 2e-07
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 50 4e-07
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 49 9e-07
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 44 2e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 44 3e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 43 6e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 42 8e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 40 6e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 38 0.002
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 34 0.028
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|... 31 0.15
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 30 0.35
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 29 0.80
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.8
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 2.4
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 3.2
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 4.3
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 5.6
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 5.6
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 26 5.6
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 7.4
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 7.4
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 7.4
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 25 9.8
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 153 bits (372), Expect = 2e-38
Identities = 82/128 (64%), Positives = 98/128 (76%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 444
RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N
Sbjct: 57 RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 445 KCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKADEML 624
+CHACIGGT VR+D+ L+ GV +VVG + R A + L +ADEML
Sbjct: 117 ECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRR--ALPTDAVQMFVLDEADEML 174
Query: 625 SRGFKGQI 648
SRGFK QI
Sbjct: 175 SRGFKDQI 182
Score = 81.8 bits (193), Expect = 1e-16
Identities = 34/48 (70%), Positives = 44/48 (91%)
Frame = +2
Query: 110 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 253
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMP 52
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 141 bits (342), Expect = 9e-35
Identities = 79/141 (56%), Positives = 99/141 (70%), Gaps = 3/141 (2%)
Frame = +1
Query: 235 ATRNNAFIQ---GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 405
A ++ A IQ GRDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QI
Sbjct: 46 AVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQI 105
Query: 406 QKVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQP 585
Q VV+ALGDH+N +CHACIGGT+V DI++L+ G +V G + R + +
Sbjct: 106 QNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRT--RN 163
Query: 586 SNFWFLMKADEMLSRGFKGQI 648
L +ADE+L++GFK QI
Sbjct: 164 VKMLILDEADELLNQGFKEQI 184
Score = 58.4 bits (135), Expect = 1e-09
Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Frame = +2
Query: 110 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSK 262
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ K
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICK 57
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 91.5 bits (217), Expect = 1e-19
Identities = 44/90 (48%), Positives = 61/90 (67%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q +V LG H
Sbjct: 79 LSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKH 138
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
+N K GGT +R+DI +L + V +VVG
Sbjct: 139 MNVKVMVTTGGTTLRDDIIRLNDTVHIVVG 168
Score = 42.3 bits (95), Expect = 8e-05
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +2
Query: 62 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 229
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 230 IQQRAI 247
IQ+ +I
Sbjct: 70 IQEESI 75
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 67.3 bits (157), Expect = 2e-12
Identities = 30/61 (49%), Positives = 46/61 (75%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 444
R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G +
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 213
Query: 445 K 447
K
Sbjct: 214 K 214
Score = 43.6 bits (98), Expect = 3e-05
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +2
Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
V++F+++ LK ELL+GIY+ F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 60.5 bits (140), Expect = 3e-10
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
I G DV+ QA+SG GKTA F +S LQQI+ E L+L TRELA QI+ +
Sbjct: 86 ILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKY 145
Query: 436 L-NAKCHACIGGTNVREDIRQLEN 504
L + + GG N+++D+ ++
Sbjct: 146 LPDVRTAVFYGGINIKQDMEAFKD 169
Score = 33.1 bits (72), Expect = 0.049
Identities = 18/33 (54%), Positives = 19/33 (57%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPS 256
F D LK ELLR I GFE PS +QQ I S
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQS 85
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 60.5 bits (140), Expect = 3e-10
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++GR+ I A++G+GKTA F++ I+++ ALIL PTRELA QI + ALG +
Sbjct: 42 LEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGAN 101
Query: 436 LNAKCHACIGGTN-VREDI 489
LN K +GG + +R+ I
Sbjct: 102 LNLKHALIVGGMDMIRQSI 120
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 59.3 bits (137), Expect = 7e-10
Identities = 28/71 (39%), Positives = 46/71 (64%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 444
RDVI AQ+G+GKTA F++ ++Q++ + A++LAPTRELA QI + A+G +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGV 143
Query: 445 KCHACIGGTNV 477
+ +GG ++
Sbjct: 144 RSVVIVGGMDM 154
Score = 31.5 bits (68), Expect = 0.15
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +2
Query: 14 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 193
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 194 GIYAYGFEKPSAIQQRAI 247
GF+ P+ IQQ AI
Sbjct: 60 ACEKLGFKTPTPIQQEAI 77
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 59.3 bits (137), Expect = 7e-10
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQALILAPTRELAQQIQKVVIALG 429
++GRDV+ A++G+GKTA F I +++ + +++ +ALIL+P RELA Q KVV
Sbjct: 104 LEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFS 163
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
+ + A +GG ++ E L +VV
Sbjct: 164 KGTDLRSVAIVGGVSLEEQFSLLSGKPDIVV 194
Score = 31.5 bits (68), Expect = 0.15
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F M L + LLR I+ GF+ P+ IQ++ I
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTI 100
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 56.4 bits (130), Expect = 5e-09
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQKVV 417
++G+D++AQA++G+GKTA + I IL+ QID + R AL+L PTRELAQQ+ V+
Sbjct: 49 LEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL 108
Query: 418 IALGDHLNAKCHACIGGTNV 477
+ L A C I NV
Sbjct: 109 ----EKLTAFCSKHIRFINV 124
Score = 32.7 bits (71), Expect = 0.065
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 152 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
+TF D NL L R I+ FEKP+++Q I
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETI 45
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 54.8 bits (126), Expect = 1e-08
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQIQK 411
+Q +D+I A++G+GKTA F I ++ I + E A++LAPTRELAQQIQ
Sbjct: 284 LQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQV 343
Query: 412 VVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV---GHSRSCIWI**TRPCASCQQ 582
+ L +C + +GG E Q+ G +VV G C+ R Q
Sbjct: 344 EGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCL----ERRLFVLSQ 399
Query: 583 PSNFWFLMKADEMLSRGFKGQI 648
+ + +AD ML GF+ +
Sbjct: 400 -CTYVVMDEADRMLDMGFEDDV 420
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 54.8 bits (126), Expect = 1e-08
Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVIA 423
++GRD++ A++G+GKT F + +++ + TS+ AL+++PTRELA Q + ++
Sbjct: 74 LKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVK 133
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLENGVMLV 519
+G + IGG N +E+ +L +LV
Sbjct: 134 IGRLHSFSAGLIIGGNNYKEEKERLSRMNILV 165
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 54.0 bits (124), Expect = 2e-08
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGD 432
G+D++ A +G+GKTA F + IL+++ + + LIL PTRELA Q V +
Sbjct: 296 GKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIAS 355
Query: 433 HLNAKCHACIGGTNVREDIRQLENGVMLVV 522
+ CIGG +++ ++L +V+
Sbjct: 356 FTDIMVCLCIGGLSLKLQEQELRKRPDIVI 385
Score = 31.9 bits (69), Expect = 0.11
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 155 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
+F MNL +L+G+ GFE P+ IQ + I
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTI 290
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 53.2 bits (122), Expect = 4e-08
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIAL 426
+ GRDV+ A++G+GKT F I LQ ++ + + L+++PTRELA Q + + +L
Sbjct: 200 LAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSL 259
Query: 427 GDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLM 606
N K GG E R +N +++ R I C Q + L
Sbjct: 260 IQGTNLKAVVVYGGAPKSEQARAAKNASVIIGTPGRLLDLI--NDGSIDCSQ-VGYLVLD 316
Query: 607 KADEMLSRGFKGQI 648
+AD ML GF+ I
Sbjct: 317 EADRMLDTGFEQDI 330
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 51.6 bits (118), Expect = 1e-07
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDH 435
G D+I +A +G+GKT F I IL+ + + QAL++APTRELA QI + +
Sbjct: 159 GFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPS 218
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVV 522
N + + GG V++ R L +VV
Sbjct: 219 PNIRVMSITGGLAVQKQQRLLNKHPHVVV 247
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 50.8 bits (116), Expect = 2e-07
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKV 414
A GRDVI A++G+GKT F + + + I ++ + A+I+ PTRELA QI +
Sbjct: 451 AITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRE 510
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
LN + GG +++ I L+ G +VV
Sbjct: 511 CKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVV 546
Score = 26.6 bits (56), Expect = 4.3
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +2
Query: 134 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI--MPSSKDAM-LSLKPSQELEK 304
D + V ++ L + + I + G+EKP++IQ +AI + S +D + ++ S +
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471
Query: 305 LLLSLYR 325
LL ++R
Sbjct: 472 FLLPMFR 478
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 50.0 bits (114), Expect = 4e-07
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Frame = +1
Query: 226 CNPATRNNAFIQGRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPT 384
C PA N +D +AQ+G+GKT + + I+Q++ T A+I+APT
Sbjct: 169 CLPALLNT---DDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPT 225
Query: 385 RELAQQIQKVVIALGD----HLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
REL QQI V L + H C+ IGG + + ++ GV +++G
Sbjct: 226 RELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIG 275
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 48.8 bits (111), Expect = 9e-07
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIA 423
+ GRDV+ A++G+GKT F +I +L + R +I++PTRELA QI V
Sbjct: 124 LAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKE 183
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
L + + IGG N R + +L GV L+V
Sbjct: 184 LLKYHHQTFGIVIGGANRRAEADKLVKGVNLLV 216
Score = 32.7 bits (71), Expect = 0.065
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 253
+E F D+ L E + + I GFE + IQ+R+I P
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPP 122
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 44.4 bits (100), Expect = 2e-05
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVI 420
+ GRD++ + +G+GKT ++ + + I+ L+LAPTRELA QIQ+
Sbjct: 157 MSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECT 216
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWF 600
G + GG IR L GV + + + + + + +
Sbjct: 217 KFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDM--LDSNKTNLRRVTYLV 274
Query: 601 LMKADEMLSRGFKGQI 648
L +AD ML GF+ QI
Sbjct: 275 LDEADRMLDMGFEPQI 290
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 244
V TF++ +L+ + GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 44.0 bits (99), Expect = 3e-05
Identities = 52/159 (32%), Positives = 70/159 (44%), Gaps = 20/159 (12%)
Frame = +1
Query: 232 PATRNNAFI--QGRDVIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQ 363
P +N+ I GRD++A AQ+G+GKTA F IL Q R +
Sbjct: 194 PVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRK 253
Query: 364 A----LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHS 531
A LILAPTREL QI + + A GG ++R IRQ++ G L+
Sbjct: 254 AYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATP 313
Query: 532 RSCIWI**TRPCASCQQPSNFWFLMKADEMLSRGFKGQI 648
+ + R S F L +AD ML GF+ QI
Sbjct: 314 GRLVDL-IDRGRISLAN-IKFLVLDEADRMLDMGFEPQI 350
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 42.7 bits (96), Expect = 6e-05
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Frame = +1
Query: 253 FIQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKV 414
F++ +D++ +A +G+GKT + + ++ DT ALI+APTRELA QI V
Sbjct: 35 FLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNV 91
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 42.3 bits (95), Expect = 8e-05
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRELAQQIQK 411
RD++A A +G+GKT + ILQ++ + +A+I+APTREL +QI +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 39.5 bits (88), Expect = 6e-04
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALGDHL 438
G DV A +G+GKT ++ I I+Q + ++ + +++ PTREL Q+ K
Sbjct: 173 GGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGA 232
Query: 439 NAKCHACIGGTNVREDIRQLENG 507
+ A G ++R + QL NG
Sbjct: 233 GLQVCAWTGQKSLRHETYQL-NG 254
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 37.9 bits (84), Expect = 0.002
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Frame = +1
Query: 244 NNAFIQGRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQ 408
N F + + QA++GTGKT F + + + + + ++IL+PTRELA QI
Sbjct: 70 NEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIF 129
Query: 409 KVVIALGDHLNAKCHACIGGTNVREDIRQLENG 507
+ L + IGG + + + G
Sbjct: 130 EEARKLTYGTGIRVSYAIGGNSKMREENAIRRG 162
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 33.9 bits (74), Expect = 0.028
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +1
Query: 217 KTFCNPATRNNAFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELA 396
KT+ + A N G VI + +GK+ + I ILQ + + A + PT+ LA
Sbjct: 311 KTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLA 369
Query: 397 QQIQKVVI 420
Q +K +I
Sbjct: 370 QDQKKSLI 377
>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
3|||Manual
Length = 700
Score = 31.5 bits (68), Expect = 0.15
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = -2
Query: 767 GISPIKASEVTSKYHPSGHGKPESKYDLNIKLTTS*GHHGIWPLKPLDNISSAFIKNQK 591
GI+ K + +T YH +G +++YDL L S W K +D ++S F ++Q+
Sbjct: 645 GINRHKMTTLTPSYHAETYGVDDNRYDLRQFLYPS----WTWQNKKIDALASKFEQHQR 699
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 30.3 bits (65), Expect = 0.35
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 125 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSKD 265
LDT+W V + NL+ + + I + F PS I + MPS D
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLND 230
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 29.1 bits (62), Expect = 0.80
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 128 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKP--SAIQQRAIMPSSKDAMLSLKPSQELE 301
DTDWD +V + D++L+ RGI A G + + Q+ A + SSK +LK ++
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSKKMNENLKAAKNQS 673
Query: 302 KLLLSLYRFYNKS 340
L+ ++ + S
Sbjct: 674 SESLTSFKGHTDS 686
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 122 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 214
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 292 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 408
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 324 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 425
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 99 DLREWTLGHLTPT 137
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 664 DVVSLMFKSYLLSGLPCPDGWY 729
D + + S +LS LPCPD +Y
Sbjct: 1799 DELDITLLSDILSQLPCPDAYY 1820
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 438 QVITKSYHHLLNLLGQLSCGSQDQ 367
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 610 LSSRTKSLMVVGMKRTDEFIISIYTTWSAQQLT*HHSPVGEYLHGHW 470
L++ S+ + T F IS++ W A SP+GE L+ HW
Sbjct: 196 LANVASSMCDIFTPETVGFGISLFV-WGANAGASIGSPIGEALYDHW 241
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 403 IQKVVIALGDHLNAKCHACIGGTNVRED 486
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -1
Query: 498 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 397
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 119 QGPFPEVHRNYLDPSMAHFWNPLANL 42
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 810 VKASSLSGTKVCRTRNLSNKGF 745
+KA + S T+ C T++L +GF
Sbjct: 921 LKAQNFSATRACLTQSLEEEGF 942
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,835,037
Number of Sequences: 5004
Number of extensions: 87092
Number of successful extensions: 267
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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