Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30515
(822 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 140 1e-33
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 140 1e-33
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 136 1e-32
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 132 4e-31
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 111 4e-25
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 86 3e-17
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 86 3e-17
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 82 5e-16
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 82 5e-16
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 76 2e-14
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 66 4e-11
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 65 5e-11
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 64 8e-11
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 63 2e-10
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 63 2e-10
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 63 2e-10
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 63 2e-10
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 63 2e-10
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 63 2e-10
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 63 2e-10
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 62 6e-10
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 61 8e-10
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 61 1e-09
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 60 2e-09
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 59 3e-09
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 59 4e-09
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 59 4e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 58 5e-09
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 58 5e-09
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 58 9e-09
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 57 1e-08
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 57 1e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 56 4e-08
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 56 4e-08
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 55 5e-08
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 55 5e-08
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 55 7e-08
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 53 2e-07
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 52 3e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 50 1e-06
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 50 1e-06
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 50 1e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 49 4e-06
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 49 4e-06
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 49 4e-06
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 47 2e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 47 2e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 46 3e-05
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 46 4e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 45 7e-05
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 45 7e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 44 1e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 44 2e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 43 3e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 43 3e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 42 4e-04
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 42 4e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 42 5e-04
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 40 0.002
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 40 0.002
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 37 0.019
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 36 0.032
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 35 0.075
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 31 0.70
At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative ... 31 1.2
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 30 1.6
At3g10020.1 68416.m01202 expressed protein 29 2.8
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 29 2.8
At2g28625.1 68415.m03480 expressed protein 29 3.7
At5g03500.1 68418.m00306 transcriptional co-activator-related lo... 29 4.9
At5g03220.1 68418.m00270 transcriptional co-activator-related co... 29 4.9
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 29 4.9
At3g04910.1 68416.m00533 protein kinase family protein contains ... 28 6.5
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 28 8.6
At1g76010.1 68414.m08825 expressed protein 28 8.6
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 28 8.6
At1g17270.1 68414.m02103 expressed protein 28 8.6
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 140 bits (339), Expect = 1e-33
Identities = 77/132 (58%), Positives = 94/132 (71%)
Frame = +1
Query: 253 FIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 432
F +G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD
Sbjct: 73 FCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGD 132
Query: 433 HLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKA 612
+L K HAC+GGT+VRED R L+ GV +VVG + ++ R F L +A
Sbjct: 133 YLGVKVHACVGGTSVREDQRILQAGVHVVVG-TPGRVFDMLKRQSLRADNIKMF-VLDEA 190
Query: 613 DEMLSRGFKGQI 648
DEMLSRGFK QI
Sbjct: 191 DEMLSRGFKDQI 202
Score = 66.9 bits (156), Expect = 2e-11
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +2
Query: 131 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSK 262
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P K
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 140 bits (339), Expect = 1e-33
Identities = 75/132 (56%), Positives = 93/132 (70%)
Frame = +1
Query: 253 FIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 432
F +G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD
Sbjct: 75 FCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGD 134
Query: 433 HLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKA 612
+L K AC+GGT+VRED R L++GV +VVG + R + + L +A
Sbjct: 135 YLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDL--LRRQSLRADAIKMFVLDEA 192
Query: 613 DEMLSRGFKGQI 648
DEMLSRGFK QI
Sbjct: 193 DEMLSRGFKDQI 204
Score = 66.9 bits (156), Expect = 2e-11
Identities = 30/47 (63%), Positives = 38/47 (80%)
Frame = +2
Query: 122 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSK 262
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P K
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCK 77
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 136 bits (330), Expect = 1e-32
Identities = 74/132 (56%), Positives = 92/132 (69%)
Frame = +1
Query: 253 FIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 432
F +G DVI QAQSGTGKTATF +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+ ALGD
Sbjct: 73 FCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGD 132
Query: 433 HLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKA 612
+ K HAC+GGT+VRED R L+ GV +VVG + R + + L +A
Sbjct: 133 YQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM--LRRQSLRPDCIKMFVLDEA 190
Query: 613 DEMLSRGFKGQI 648
DEMLSRGFK QI
Sbjct: 191 DEMLSRGFKDQI 202
Score = 67.7 bits (158), Expect = 9e-12
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = +2
Query: 131 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSK 262
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P K
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 132 bits (318), Expect = 4e-31
Identities = 72/132 (54%), Positives = 92/132 (69%), Gaps = 1/132 (0%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+QGRDVIAQAQSGTGKT+ ++S+ Q +DTS RE QALIL+PTRELA Q +K + A+G H
Sbjct: 70 LQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLH 129
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVG-HSRSCIWI**TRPCASCQQPSNFWFLMKA 612
N + HACIGG +V EDIR+LE+GV +V G R C I + + + L ++
Sbjct: 130 ANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMI---KRRSLRTRAIKLLILDES 186
Query: 613 DEMLSRGFKGQI 648
DEMLSRGFK QI
Sbjct: 187 DEMLSRGFKDQI 198
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/41 (63%), Positives = 35/41 (85%)
Frame = +2
Query: 131 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 253
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMP 68
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 111 bits (268), Expect = 4e-25
Identities = 62/132 (46%), Positives = 88/132 (66%), Gaps = 1/132 (0%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++GRDVIAQAQSGTGKT+ +IS+ Q ++ S R+ Q L+L+P+RELA Q +K + A+G H
Sbjct: 57 LKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAH 116
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPS-NFWFLMKA 612
N + HACIGG ++ EDI++LE GV V G + ++ R S Q + L ++
Sbjct: 117 TNIQAHACIGGKSIGEDIKKLERGVHAVSG-TPGRVYDMIKR--GSLQTKAVKLLVLDES 173
Query: 613 DEMLSRGFKGQI 648
DEMLS+G K QI
Sbjct: 174 DEMLSKGLKDQI 185
Score = 53.6 bits (123), Expect = 2e-07
Identities = 20/38 (52%), Positives = 32/38 (84%)
Frame = +2
Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSK 262
+++FDDM + +++LRG+Y YG++KPS IQQRA++P K
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILK 58
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 85.8 bits (203), Expect = 3e-17
Identities = 47/131 (35%), Positives = 78/131 (59%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ GRD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q +V LG H
Sbjct: 166 LTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKH 225
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKAD 615
L + GGT++++DI +L V L+VG + + T+ + + + +AD
Sbjct: 226 LKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDL--TKKGVCVLKDCSVLVMDEAD 283
Query: 616 EMLSRGFKGQI 648
++LS+ F+ +
Sbjct: 284 KLLSQEFQPSV 294
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F+D LK ELL GIY GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 85.8 bits (203), Expect = 3e-17
Identities = 47/131 (35%), Positives = 78/131 (59%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ GRD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q +V LG H
Sbjct: 166 LTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKH 225
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLMKAD 615
L + GGT++++DI +L V L+VG + + T+ + + + +AD
Sbjct: 226 LKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDL--TKKGVCVLKDCSVLVMDEAD 283
Query: 616 EMLSRGFKGQI 648
++LS+ F+ +
Sbjct: 284 KLLSQEFQPSV 294
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F+D LK ELL GIY GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 81.8 bits (193), Expect = 5e-16
Identities = 40/90 (44%), Positives = 59/90 (65%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ G D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q +V L +
Sbjct: 159 LTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
LN + GGT++R+DI +L V L+VG
Sbjct: 219 LNIQVMVTTGGTSLRDDIMRLHQPVHLLVG 248
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F+D LK +LL+GIY GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 81.8 bits (193), Expect = 5e-16
Identities = 40/90 (44%), Positives = 59/90 (65%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ G D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q +V L +
Sbjct: 159 LTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
LN + GGT++R+DI +L V L+VG
Sbjct: 219 LNIQVMVTTGGTSLRDDIMRLHQPVHLLVG 248
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F+D LK +LL+GIY GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 76.2 bits (179), Expect = 2e-14
Identities = 39/90 (43%), Positives = 56/90 (62%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ G D++A+A++GTGKT F I L++ID QA+IL PTRELA Q +V L +
Sbjct: 189 LTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKY 248
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVVG 525
L + GGT++R+DI +L V L+VG
Sbjct: 249 LKIEVMVTTGGTSLRDDIMRLYQPVHLLVG 278
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F+D LK +LLRGIY GFEKPS IQ+ +I
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESI 185
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 65.7 bits (153), Expect = 4e-11
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 5/156 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ GRDV+ AQ+G+GKTA F++ IL ++ AL++ PTRELA Q+ + ALG
Sbjct: 93 LAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSC 152
Query: 436 LNAKCHACIGGTNVREDIRQLENGVMLVV-GHSRSCIWI**TRPCASCQQPSNFWFLMKA 612
LN +C +GG ++ L + +V+ R + + + F L +A
Sbjct: 153 LNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEA 212
Query: 613 DEMLSRGFKGQI----P*CPQDVVSLMFKSYLLSGL 708
D +L GF+ ++ P+ +L+F + + S L
Sbjct: 213 DRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNL 248
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 65.3 bits (152), Expect = 5e-11
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVV 417
++GRD+I +A++GTGKT F I I+ +I R L+LAPTRELA+Q++K
Sbjct: 139 MEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEF 198
Query: 418 IALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFW 597
L+ C GGT + + +RQL+ GV + VG I + + A F
Sbjct: 199 RESAPSLDTIC--LYGGTPIGQQMRQLDYGVDVAVGTPGRVIDL--MKRGALNLSEVQFV 254
Query: 598 FLMKADEMLSRGF 636
L +AD+ML GF
Sbjct: 255 VLDEADQMLQVGF 267
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 64.5 bits (150), Expect = 8e-11
Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVV 417
++GRD+I +A++GTGKT F I I+ +I + Q L+LAPTRELA+Q++K
Sbjct: 151 MEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEF 210
Query: 418 IALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFW 597
L+ C GGT + + +R+L G+ + VG I + + A F
Sbjct: 211 RESAPSLDTIC--LYGGTPIGQQMRELNYGIDVAVGTPGRIIDL--MKRGALNLSEVQFV 266
Query: 598 FLMKADEMLSRGF 636
L +AD+ML GF
Sbjct: 267 VLDEADQMLQVGF 279
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 63.3 bits (147), Expect = 2e-10
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID-----TSIRECQ---ALILAPTRELAQQIQK 411
+Q RDVI A++G+GKTA F + +L I + E + A+++APTRELAQQI++
Sbjct: 348 LQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEE 407
Query: 412 VVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV---GHSRSCIWI**TRPCASCQQ 582
+ +L + + +GG ++ E ++ G +V+ G C+ R A Q
Sbjct: 408 ETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCL----ERRYAVLNQ 463
Query: 583 PSNFWFLMKADEMLSRGFKGQI 648
N+ L +AD M+ GF+ Q+
Sbjct: 464 -CNYVVLDEADRMIDMGFEPQV 484
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
+ ++++ L ELL+ + G++KPS IQ AI
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAI 344
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
I G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +
Sbjct: 81 ILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTY 140
Query: 436 L-NAKCHACIGGTNVR 480
L + K GG N++
Sbjct: 141 LPDTKVSVFYGGVNIK 156
Score = 32.3 bits (70), Expect = 0.40
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F D LK ELLR I GFE PS +Q I
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECI 77
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
I G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +
Sbjct: 81 ILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTY 140
Query: 436 L-NAKCHACIGGTNVR 480
L + K GG N++
Sbjct: 141 LPDTKVSVFYGGVNIK 156
Score = 32.3 bits (70), Expect = 0.40
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F D LK ELLR I GFE PS +Q I
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECI 77
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 62.9 bits (146), Expect = 2e-10
Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 423
+QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFL 603
G C GG +R LE G +VV I R S +Q S + L
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRR-ISLRQIS-YLVL 310
Query: 604 MKADEMLSRGFKGQI 648
+AD ML GF+ QI
Sbjct: 311 DEADRMLDMGFEPQI 325
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 62.9 bits (146), Expect = 2e-10
Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 423
+QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFL 603
G C GG +R LE G +VV I R S +Q S + L
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRR-ISLRQIS-YLVL 310
Query: 604 MKADEMLSRGFKGQI 648
+AD ML GF+ QI
Sbjct: 311 DEADRMLDMGFEPQI 325
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 62.9 bits (146), Expect = 2e-10
Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 423
+QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFL 603
G C GG +R LE G +VV I R S +Q S + L
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRR-ISLRQIS-YLVL 310
Query: 604 MKADEMLSRGFKGQI 648
+AD ML GF+ QI
Sbjct: 311 DEADRMLDMGFEPQI 325
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 62.9 bits (146), Expect = 2e-10
Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 10/141 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQI 405
++GRD++A AQ+G+GKTA F I+ I D ++ + A+IL+PTRELA QI
Sbjct: 194 LEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQI 253
Query: 406 QKVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQP 585
K GGT + + +R+LE GV ++V + Q
Sbjct: 254 HDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDL--LERARVSMQM 311
Query: 586 SNFWFLMKADEMLSRGFKGQI 648
F L +AD ML GF+ QI
Sbjct: 312 IRFLALDEADRMLDMGFEPQI 332
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 61.7 bits (143), Expect = 6e-10
Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALG 429
+ G DV+A A++G+GKTA F I +L+++ + + +ALIL+PTR+LA+Q K LG
Sbjct: 63 LSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELG 122
Query: 430 DHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
+ + +GG ++ + +L G +++
Sbjct: 123 KFTDLRVSLLVGGDSMEDQFEELTKGPDVII 153
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 61.3 bits (142), Expect = 8e-10
Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 10/138 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILAPTRELAQQI 405
+QGRD+IA+A++GTGKT F I I++++ T+ R + L+LAPTRELA+Q+
Sbjct: 137 LQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQV 196
Query: 406 QKVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQP 585
+K + +L+ C GG + L GV +VVG I + R +
Sbjct: 197 EKEIKESAPYLSTVC--VYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGE-- 252
Query: 586 SNFWFLMKADEMLSRGFK 639
+ L +AD+ML+ GF+
Sbjct: 253 VEYLVLDEADQMLAVGFE 270
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 60.9 bits (141), Expect = 1e-09
Identities = 54/140 (38%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQK 411
GRD++A AQ+G+GKTA F I+ I D I + A+IL+PTRELA QI
Sbjct: 183 GRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHD 242
Query: 412 VVIALGDHLNAKCHACIGGTNVREDIRQLENGV-MLVVGHSRSCIWI**TRPCASCQQPS 588
K GGT V + IR+LE GV +LV R + R S Q
Sbjct: 243 EARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLL--ERGRVSLQM-V 299
Query: 589 NFWFLMKADEMLSRGFKGQI 648
F L +AD ML GF+ QI
Sbjct: 300 RFLALDEADRMLDMGFEPQI 319
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +1
Query: 268 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 444
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L +
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 445 KCHACIGGTNVR 480
K GG N++
Sbjct: 62 KVSVFYGGVNIK 73
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIAL 426
+ GRD+ A A +G+GKTA F++ L+++ + + LIL PTRELA QI ++ L
Sbjct: 202 LTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNL 261
Query: 427 GDHLNAKCHACIGGTNVRE 483
+ KC +GG +VRE
Sbjct: 262 AQFTDIKCGLIVGGLSVRE 280
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 152 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
+TF ++NL LLR G++KP+ IQ I
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACI 198
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 58.8 bits (136), Expect = 4e-09
Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 423
+Q RD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ +
Sbjct: 264 MQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALK 323
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFL 603
G C GG ++++E GV +VV I + S Q S + L
Sbjct: 324 FGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKR-ISLHQVS-YLVL 381
Query: 604 MKADEMLSRGFKGQI 648
+AD ML GF+ QI
Sbjct: 382 DEADRMLDMGFEPQI 396
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 58.8 bits (136), Expect = 4e-09
Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 10/141 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVI 420
+ GRD I A++G+GKT F + +L+ I D E L++APTREL QQI +
Sbjct: 564 MSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIR 623
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSN--- 591
L +C GG+ V + I +L+ G +VV I I C S + +N
Sbjct: 624 KFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDI----LCTSSGKITNLRR 679
Query: 592 --FWFLMKADEMLSRGFKGQI 648
F + +AD M GF+ QI
Sbjct: 680 VTFLVMDEADRMFDMGFEPQI 700
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 58.4 bits (135), Expect = 5e-09
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 8/141 (5%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQI 405
A + G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q+
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
Query: 406 QKVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQP 585
+ LG L K +GG + + +++ GV L++G + + ++
Sbjct: 203 EDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDL-LSKHTIELDNI 261
Query: 586 SNFWFLMKADEMLSRGFKGQI 648
F L + D ML RGF+ Q+
Sbjct: 262 MTF-VLDEVDCMLQRGFRDQV 281
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 58.4 bits (135), Expect = 5e-09
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 8/141 (5%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQI 405
A + G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q+
Sbjct: 6 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 65
Query: 406 QKVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQP 585
+ LG L K +GG + + +++ GV L++G + + ++
Sbjct: 66 EDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDL-LSKHTIELDNI 124
Query: 586 SNFWFLMKADEMLSRGFKGQI 648
F L + D ML RGF+ Q+
Sbjct: 125 MTF-VLDEVDCMLQRGFRDQV 144
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 57.6 bits (133), Expect = 9e-09
Identities = 47/135 (34%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 423
+Q RD++A A++G+GKT + I +L+ R LILAPTRELA QIQ +
Sbjct: 470 LQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALR 529
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFL 603
G C GG +++LE G +VV I QQ S L
Sbjct: 530 FGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDI-LEMKMIDFQQVS-LLVL 587
Query: 604 MKADEMLSRGFKGQI 648
+AD ML GF+ QI
Sbjct: 588 DEADRMLDMGFEPQI 602
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 57.2 bits (132), Expect = 1e-08
Identities = 46/140 (32%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVI 420
++GRD+I A++G+GKT + + L + R Q LILAPTRELA QIQ+
Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESR 259
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPS---- 588
G + GG IR L GV +V+ I CQ +
Sbjct: 260 KFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI------DMLECQHTNLKRV 313
Query: 589 NFWFLMKADEMLSRGFKGQI 648
+ L +AD ML GF+ QI
Sbjct: 314 TYLVLDEADRMLDMGFEPQI 333
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 57.2 bits (132), Expect = 1e-08
Identities = 46/140 (32%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVI 420
++GRD+I A++G+GKT + + L + R Q LILAPTRELA QIQ+
Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESR 259
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPS---- 588
G + GG IR L GV +V+ I CQ +
Sbjct: 260 KFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI------DMLECQHTNLKRV 313
Query: 589 NFWFLMKADEMLSRGFKGQI 648
+ L +AD ML GF+ QI
Sbjct: 314 TYLVLDEADRMLDMGFEPQI 333
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 55.6 bits (128), Expect = 4e-08
Identities = 25/55 (45%), Positives = 39/55 (70%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 429
+ +IAQA +G+GKT F + +L ++D ++RE QAL + PTRELA Q +V+ +G
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYA-YGFEKPSAIQ 235
F+D+NL EL++G+Y FEKPS IQ
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQ 119
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 55.6 bits (128), Expect = 4e-08
Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 10/148 (6%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVI 420
+ GRD I A++G+GKT F + +L+ I D E L++APTREL QQI +
Sbjct: 431 MSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIR 490
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSN--- 591
L C GG+ V + I +L+ G +VV I I C S + +N
Sbjct: 491 KFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDI----LCTSSGKITNLRR 546
Query: 592 --FWFLMKADEMLSRGFKGQIP*CPQDV 669
+ + +AD M GF+ QI Q++
Sbjct: 547 VTYLVMDEADRMFDMGFEPQITRIVQNI 574
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 55.2 bits (127), Expect = 5e-08
Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKV 414
RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNF 594
K GGT + + +R+LE G ++V + Q F
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDL--LERARVSMQMIRF 306
Query: 595 WFLMKADEMLSRGFKGQI 648
L +AD ML GF+ QI
Sbjct: 307 LALDEADRMLDMGFEPQI 324
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 55.2 bits (127), Expect = 5e-08
Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKV 414
RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNF 594
K GGT + + +R+LE G ++V + Q F
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDL--LERARVSMQMIRF 306
Query: 595 WFLMKADEMLSRGFKGQI 648
L +AD ML GF+ QI
Sbjct: 307 LALDEADRMLDMGFEPQI 324
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 54.8 bits (126), Expect = 7e-08
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVI 420
++GRD+I A++G+GKT ++ + + ++ L+LAPTRELA QIQ+
Sbjct: 134 MKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEAS 193
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWF 600
G K GG +R L+ GV +V+ I + + + +
Sbjct: 194 KFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM--MESNNTNLRRVTYLV 251
Query: 601 LMKADEMLSRGFKGQI 648
L +AD ML GF QI
Sbjct: 252 LDEADRMLDMGFDPQI 267
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 12/83 (14%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------------ALILAPTRELAQ 399
++G+DVI AQ+G+GKT F+I ILQ + + + + A +L+PTRELA
Sbjct: 44 LEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAI 103
Query: 400 QIQKVVIALGDHLNAKCHACIGG 468
QI + ALG ++ +C +GG
Sbjct: 104 QIAEQFEALGADISLRCAVLVGG 126
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 140 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
++VV+TF ++ ++EEL++ G++ PS IQ A+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEAL 40
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 52.4 bits (120), Expect = 3e-07
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 5/136 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVVI 420
+ GRDVI A++G+GKTA F + ++ I ++ + +I APTRELA QI
Sbjct: 263 LSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAK 322
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWF 600
+ A GG + E ++L+ G +VV I + + A +++
Sbjct: 323 KFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDM--LKMKALTMMRASYLV 380
Query: 601 LMKADEMLSRGFKGQI 648
L +AD M GF+ Q+
Sbjct: 381 LDEADRMFDLGFEPQV 396
Score = 31.1 bits (67), Expect = 0.92
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 134 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
D + V+TF+D +++ I +EKP+AIQ +A+
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQAL 259
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/51 (47%), Positives = 32/51 (62%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 414
GRD I AQ+G+GKT T+ + I I+ QA+I+ PTREL Q+ KV
Sbjct: 113 GRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIA 423
++G+DV+ A++G+GKT F ++ +L + S R +++ PTRELA Q + V
Sbjct: 124 LEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEE 183
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
L H + IGG N R + +++ +G LV+
Sbjct: 184 LLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVI 216
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 50.4 bits (115), Expect = 1e-06
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC---------QALILAPTRELAQQIQ 408
+ GRD+I A++G+GKT F I + + ++ L+L+PTRELA QI
Sbjct: 149 LDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQIS 208
Query: 409 KVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
V+ G+ K GG++ I + +GV +V+G
Sbjct: 209 DVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIG 247
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 48.8 bits (111), Expect = 4e-06
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELA-QQIQ 408
+QG+D++A+A++GTGKT F + ++ + D L++ PTRELA Q
Sbjct: 115 LQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAA 174
Query: 409 KVVIALGDHLNAKCHACIGGTNVREDIRQLENG--VMLVVGHSRSCIWI**TRPCASCQQ 582
+ I L H + IGGT + + R+L+ +LV R I T A+
Sbjct: 175 EANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLM 234
Query: 583 PSNFWFLMKADEMLSRGFKGQI 648
L +AD +L GF+ +I
Sbjct: 235 GVKVLVLDEADHLLDMGFRREI 256
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/79 (29%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIALGDHLN 441
RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR+LA Q++ V A+ +
Sbjct: 63 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVG 122
Query: 442 AKCHACIGGTNVREDIRQL 498
+ +G +++ +I QL
Sbjct: 123 LSVGSAVGQSSIAGEISQL 141
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQ 402
A ++ + V+ + +G+GKT + + I+Q + T R + ++L PTREL++Q
Sbjct: 145 AVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQ 204
Query: 403 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
+ +V ++ H + GG+ +R L N + +VVG
Sbjct: 205 VYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVG 245
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 46.8 bits (106), Expect = 2e-05
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELAQQIQKVVIALG 429
GRD++ A++G+GKT F I IL+++ + +I++PTRELA Q V+ +G
Sbjct: 108 GRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVG 167
Query: 430 DHLNAKCHACIGG-TNVREDIRQLENGVMLVVGHSRSCIWI**TRPCASCQQPSNFWFLM 606
IGG V + ++ +LV R + T P C Q L
Sbjct: 168 KFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQHMDET-PNFECPQ-LQILILD 225
Query: 607 KADEMLSRGFKGQI 648
+AD +L FKGQ+
Sbjct: 226 EADRVLDSAFKGQL 239
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 46.8 bits (106), Expect = 2e-05
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ-IQ 408
+QG+DV+A+A++GTGKT F + ++ + D+ L++ PTRELA Q
Sbjct: 417 LQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAA 476
Query: 409 KVVIALGDHLNAKCHACIGGTNVREDIRQLENG--VMLVVGHSRSCIWI**TRPCASCQQ 582
+ L H + IGGT + + R+++ +LV R I T A+
Sbjct: 477 EANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLM 536
Query: 583 PSNFWFLMKADEMLSRGFKGQI 648
L +AD +L GF+ I
Sbjct: 537 GVKVLVLDEADHLLDMGFRRDI 558
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 46.0 bits (104), Expect = 3e-05
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIAL 426
+DV+ A +G+GKT F + ++ I S + +I++PTREL+ QI KV
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPF 113
Query: 427 GDHL-NAKCHACIGGTNVREDIRQL-ENGVMLVVG 525
L N +GG V D+ L E G L++G
Sbjct: 114 VSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIG 148
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 45.6 bits (103), Expect = 4e-05
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSI----------RECQALILAPTRELAQQI 405
+ G D++ +A++G GKT F + IL+ + R L+L PTRELA+Q+
Sbjct: 131 LDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQV 190
Query: 406 QKVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
A G L GG + +L+ GV +VVG
Sbjct: 191 AADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVG 230
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 44.8 bits (101), Expect = 7e-05
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ-IQ 408
++G+DV+A+A++GTGKT F + ++ + D AL++ PTRELA Q
Sbjct: 89 LKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAAT 148
Query: 409 KVVIALGDHLNAKCHACIGGTNVREDIRQLENG--VMLVVGHSRSCIWI**TRPCASCQQ 582
+ L H + IGGT + + ++++ +LV R I T A+ +
Sbjct: 149 EANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLK 208
Query: 583 PSNFWFLMKADEMLSRGFKGQI 648
L +AD +L GF+ I
Sbjct: 209 GVKVLVLDEADHLLDMGFRKDI 230
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 44.8 bits (101), Expect = 7e-05
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 15/148 (10%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQI-------------DTSIRECQALILAPTRE 390
A I+G D + Q+ +G+GKT + + IL +I + E QA+I+AP+RE
Sbjct: 143 AIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRE 202
Query: 391 LAQQI-QKVVIALGDHLNAKCHACIGGTN-VREDIRQLENGVMLVVGHSRSCIWI**TRP 564
L QI ++V LG +GG N +R++ +N +VVG I ++
Sbjct: 203 LGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAEI--SKG 260
Query: 565 CASCQQPSNFWFLMKADEMLSRGFKGQI 648
F L + DE+LS F+ I
Sbjct: 261 GKLHTHGCRFLVLDEVDELLSFNFREDI 288
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 44.0 bits (99), Expect = 1e-04
Identities = 29/103 (28%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRE---CQALILAPTRELAQQIQKVV 417
++G+DV+A+A++G+GKT + + +LQ++ D+ ++ A IL P+REL QQ+ V
Sbjct: 81 LEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEV 140
Query: 418 IALGDHLNAKCHAC-IGGTNVREDIRQLENGVMLVVGHSRSCI 543
+L + + A + + D+R G+ ++ + +CI
Sbjct: 141 SSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPACI 183
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 140 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
++ ++F+++ L L+R + G EKP+ IQQ AI
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAI 77
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 43.6 bits (98), Expect = 2e-04
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTRELAQQIQ 408
+ G+D + +A++GTGK+ F + ++L+ +++ + LIL PTRELA QI
Sbjct: 410 LDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIA 469
Query: 409 KVVIA-LGDHLNAKCHACIGGTNVREDIRQLEN 504
A L +H IGGT R D ++LE+
Sbjct: 470 AEGKALLKNHDGIGVQTLIGGTRFRLDQQRLES 502
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 42.7 bits (96), Expect = 3e-04
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 20/113 (17%)
Frame = +1
Query: 244 NNAFIQGRDVIAQAQSGTGKTATFSISILQQ-IDTSIR----------ECQ--------- 363
N A QG+DVI A++G+GKT F + ILQ+ +D + E Q
Sbjct: 222 NVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLR 281
Query: 364 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
ALI+ PTRELA Q+ + + +L+ K +GG + R+L+ +VV
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVV 334
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 42.7 bits (96), Expect = 3e-04
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 12/95 (12%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTRELAQQIQ 408
+ G+D + +A++GTGK+ F + ++L+ +++ + ALIL PTRELA QI
Sbjct: 363 LDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIA 422
Query: 409 ---KVVIALGDHLNAKCHACIGGTNVREDIRQLEN 504
K ++ D + + IGGT + D ++LE+
Sbjct: 423 AEGKALLKFHDGIGVQ--TLIGGTRFKLDQQRLES 455
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 42.3 bits (95), Expect = 4e-04
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIA 423
+ G DV+ A++G+GKT F ++ +L ++ + R L++ PTRELA Q V
Sbjct: 189 MMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKE 248
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
L + + IGG + + L GV L+V
Sbjct: 249 LLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLV 281
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 42.3 bits (95), Expect = 4e-04
Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQ---ALILAPTRELAQQ--- 402
+ GRD+I A +G+GKT F + ++ ++I I + AL++ P+RELA+Q
Sbjct: 132 LSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYD 191
Query: 403 -IQKVVIALGD--HLNAKCHACIGGTNVREDIRQLENGVMLVV 522
+++ V +L + + + CIGG ++R + ++ GV +VV
Sbjct: 192 VVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVV 234
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 41.9 bits (94), Expect = 5e-04
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Frame = +1
Query: 223 FCNP--ATRNNAFIQGRDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILA 378
FC P A +DV A +G+GKT F + +++ + S + +I++
Sbjct: 38 FCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIIS 97
Query: 379 PTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQL-ENGVMLVVG 525
PTREL+ QI V L N +GG V+ D++ + E G +++G
Sbjct: 98 PTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIG 148
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 40.3 bits (90), Expect = 0.002
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 14/103 (13%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATF-----SISILQQIDTSIRECQ---ALILAPTRELAQQIQK 411
+ GRD+I A +G+GKT F I++ +++ I + LI+ P+RELA+Q +
Sbjct: 181 LAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYE 240
Query: 412 VV------IALGDHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
VV + + + CIGG ++R + ++ GV +VV
Sbjct: 241 VVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVV 283
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIAL 426
+DV+ A +G+GKT F + ++ I S + +I++PTREL+ QI KV A+
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAV 114
Query: 427 GDHLNAKCHACIGGTNVREDIRQLENGVMLVVG 525
AKC N E E G L++G
Sbjct: 115 RLDF-AKCREVEADMNTLE-----EEGANLLIG 141
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 36.7 bits (81), Expect = 0.019
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVV 417
+ GRDV+ A +GTGKT + ++ + + AL++ PTREL Q+ + +
Sbjct: 65 LSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETL 124
Query: 418 IALGDHLNAKCHACI-GGTNVREDIRQLENGVMLVV 522
L + + GG ++ +L G+ +++
Sbjct: 125 EKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILI 160
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 35.9 bits (79), Expect = 0.032
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIREC-QALILAPTRELAQQIQ 408
I G+ I QSG+GKT + + ++Q++ S C + ++L PT ELA Q+
Sbjct: 409 IDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVL 468
Query: 409 KVVIALG-DHLNAKCHACIGGTNVREDIRQLENGVMLVV 522
++ + + GG R + LE GV +++
Sbjct: 469 ANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLI 507
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 34.7 bits (76), Expect = 0.075
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQ 402
+ GR+ A A +G+GKT F +L ++ S +A+IL+P RELA Q
Sbjct: 176 LSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 31.5 bits (68), Expect = 0.70
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 367 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI-RQLENGVMLVVGH 528
LILA T + + K ++ LG ++NA C GGT + R L + V L++ H
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGTPLHHAAKRGLVHTVKLLLSH 100
>At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative
similar to RNA-directed RNA polymerase GB:CAA09697
GI:4138282 [Nicotiana tabacum]
Length = 1107
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 669 CQLDVQVIFTLWLTMP*WMVFGSNLRSLYWRDSWY 773
CQ+ + TLW + FG +R L++ SWY
Sbjct: 106 CQVSTKKFLTLWSAQDVCVSFGIGMRKLHFSFSWY 140
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +1
Query: 316 SISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 468
+++ L+++ +++EC +A+ + P+ A Q++ + + LG+ NA+ H C G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 68 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 241
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140
Query: 242 AIMP 253
+ P
Sbjct: 141 EVDP 144
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 14/75 (18%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ--------------ALILAPTR 387
+ + G+DVI A++G+GKT + I+ Q+ + + + +LIL P
Sbjct: 113 SILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNV 172
Query: 388 ELAQQIQKVVIALGD 432
L +Q+ ++V L D
Sbjct: 173 MLCEQVVRMVNGLVD 187
>At2g28625.1 68415.m03480 expressed protein
Length = 98
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = -1
Query: 570 SARTSLSYPYTRPGVPNN*HDTILQLANIFTDIGATNASMAFSIQVITKSYHHLLNLLGQ 391
S+ +SLS P++ G N H L+ +F+ +N+S+ F HH+ + Q
Sbjct: 32 SSVSSLSQPFSPEGSSNKSHVLENNLSFVFSLDHNSNSSLMFPRDRPCSCLHHVFEWILQ 91
Query: 390 LSCG 379
CG
Sbjct: 92 RCCG 95
>At5g03500.1 68418.m00306 transcriptional co-activator-related low
similarity to transcriptional co-activator CRSP33 [Homo
sapiens] GI:4220890
Length = 443
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 504 ILQLANIFTDIGATNASMAFSIQVITKSYHHLLNLL 397
IL+LA++ D + A I I K+ HHLLN L
Sbjct: 85 ILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120
>At5g03220.1 68418.m00270 transcriptional co-activator-related
contains weak similarity to Cofactor required for Sp1
transcriptional activation subunit 9 (Transcriptional
co-activator CRSP33) (RNA polymerase transcriptional
regulation mediator subunit 7 homolog) (hMED7)
(Activator-recruited cofactor 34 kDa component) (ARC34)
(Swiss-Prot:O43513) [Homo sapiens]
Length = 168
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 504 ILQLANIFTDIGATNASMAFSIQVITKSYHHLLNLL 397
IL+LA++ D + A I I K+ HHLLN L
Sbjct: 85 ILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -2
Query: 770 PGISPIKASEVTSKYHPSGHGKPESKYDLNIKLTTS*GHHGIWPLKPLDNISSAFIKNQK 591
P I+P + T +H H P +T + HH + P P I++ I NQK
Sbjct: 162 PTITPPVTTTTTGHHH---HRPPPPPPATTTPITNTSDHHQLHPPPPATTITTTTISNQK 218
>At3g04910.1 68416.m00533 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/47 (25%), Positives = 20/47 (42%)
Frame = -3
Query: 568 RTDEFIISIYTTWSAQQLT*HHSPVGEYLHGHWCHQCKHGI*HSSDH 428
R F+ ++T+ + +Q H V HWC Q G+ + H
Sbjct: 98 RNINFVTELFTSGTLRQYRLRHKRVNIRAMKHWCRQILRGLHYLHSH 144
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 334 QIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 468
+++ +++EC +A+ P+ A Q++ + + LG+ NA+ H C+ G
Sbjct: 260 RLEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSG 306
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +2
Query: 23 SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 121
S R D P + +GPS+ +G YDGP G G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 247 NAFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL 426
NA + GRDV+ +G GK S+ Q+ +R L+++P L Q + AL
Sbjct: 99 NAIMTGRDVLVIMAAGGGK------SLCYQLPAMLRGGTTLVVSPLLSLIQDQVMGLAAL 152
Query: 427 G 429
G
Sbjct: 153 G 153
>At1g17270.1 68414.m02103 expressed protein
Length = 564
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 212 FEKPSAIQQRAIMPSSKDAMLS-LKPSQELEKLLLSLYRFYNKSIQA 349
F +AI ++ + K A+L + ++E+E++LLS +R N SI A
Sbjct: 133 FNSSNAISSSVVIDNVKAALLKQISVNKEIEEVLLSPHRTGNYSITA 179
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,312,481
Number of Sequences: 28952
Number of extensions: 469870
Number of successful extensions: 1515
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1465
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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