Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30514
         (836 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0659 + 20395422-20396765                                         33   0.21 
06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398     31   1.1  
05_03_0614 - 16206005-16206586,16207585-16207608,16209746-162098...    30   2.0  
03_06_0316 + 33091194-33091370,33091451-33092155                       29   3.5  
12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012     29   4.6  
08_02_0229 - 14540302-14540736                                         29   4.6  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    29   6.1  
04_04_0063 - 22441549-22442961                                         28   8.0  
01_07_0263 - 42381238-42381816,42382256-42382420                       28   8.0  
01_01_0077 - 585670-585787,585921-586687                               28   8.0  

>07_03_0659 + 20395422-20396765
          Length = 447

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 447 ETHLCSRTSPRTS*AKTSSYPAVAPPQKHYKIIFIKGPTLPTPTGP 584
           E H CS +  R     + + P ++ P + Y+ +F+ GP L  P GP
Sbjct: 349 ELHECSPSRARKG-KMSKAQPLLSVPSRPYQGVFLNGPDLQAPRGP 393


>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
          Length = 187

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = -3

Query: 426 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 283
           V+T  SA   S +S A  AAAA G  T  + +    SA+ GNAAS  A
Sbjct: 109 VTTDASACAKSASSSATAAAAAAGAGTAGSTAAS--SASTGNAASTAA 154


>05_03_0614 -
           16206005-16206586,16207585-16207608,16209746-16209879,
           16210703-16210832
          Length = 289

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = +3

Query: 444 TETHLCSRTSPRTS*AKTSSYPAVAPPQKHYKIIFIKGPTLPTPTGPHNFLSNHKNEEE 620
           T  H CS     +S A TSS   ++PP      I I G   PTPT     L++  N  E
Sbjct: 205 TRDHRCSWAPTSSSMAMTSSPAPLSPPS--IASILISGSHFPTPTTSALALTSSSNLTE 261


>03_06_0316 + 33091194-33091370,33091451-33092155
          Length = 293

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -3

Query: 426 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 283
           ++T ++ATE  + +E   AAA +  +T       + + AK  AA RKA
Sbjct: 1   MATDVAATEPEVAAEEAAAAAPETTATAGDSKPAKEAKAKKAAAPRKA 48


>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
          Length = 296

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = -3

Query: 441 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 283
           KRST+ S+  S+ +      A  AAA    STT T +    S+A   AA+  A
Sbjct: 148 KRSTKKSSSSSSRQGGGAGNA-AAAATSSSSTTSTSTTATTSSAAAPAAAAAA 199


>08_02_0229 - 14540302-14540736
          Length = 144

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -2

Query: 370 CRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHQYNSSVSAADRGR 221
           CRR+G      R  Q++ RR+G  C   G  G     + N++V AAD GR
Sbjct: 71  CRRRGGTSGGLRGKQRAGRRRGGGCDAGGGDGTAG-RRANAAVGAADDGR 119


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 507 PAVAPPQKHYKIIFIKGPTLPTPTGP 584
           PA  PP++H++I     P LPTP  P
Sbjct: 77  PAPRPPRRHHRIPPPPPPLLPTPPPP 102


>04_04_0063 - 22441549-22442961
          Length = 470

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -3

Query: 423 STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKG--NAASRKAT*GSRMTT 259
           +T  +AT  S  + A+TA+ A         S+R VS+AKG   AAS + T   +  T
Sbjct: 310 TTTTTATACSTPASARTASVADYGFDQHLPSVRLVSSAKGTPEAASHRWTAADKSRT 366


>01_07_0263 - 42381238-42381816,42382256-42382420
          Length = 247

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 760 PKGNSWWV-AIWGEGLWGVGI 819
           P+GN   + A WGEGL GVG+
Sbjct: 71  PQGNGCCIDAAWGEGLTGVGV 91


>01_01_0077 - 585670-585787,585921-586687
          Length = 294

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 534 YKIIFIKGPTLPTPTGPHN 590
           ++I+    PTLPTP  PHN
Sbjct: 3   HQILHTSNPTLPTPPQPHN 21


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,524,527
Number of Sequences: 37544
Number of extensions: 455313
Number of successful extensions: 1871
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1867
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)