Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30514
         (836 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10132| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_47760| Best HMM Match : DUF1168 (HMM E-Value=2.1)                   29   4.7  
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)                 29   4.7  
SB_17309| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_47638| Best HMM Match : PPV_E2_N (HMM E-Value=9.1)                  29   6.2  
SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06)           29   6.2  
SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_17436| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_10132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +3

Query: 186 TPLPEVTQEA-SALPLSAADTELLYWWS---FWIPRWPFWRQHFP 308
           TPLP  T  + +  P    DT + YW +   +W P  P+W  + P
Sbjct: 29  TPLPYWTPHSLTRHPYPLLDTHIPYWTAHIPYWTPYLPYWTPYLP 73


>SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = +2

Query: 5   LSHRNISKVGVVLIGY*INYHRV--SSKRISL----VSSKHKMRAFVVLACVAMAYGRPE 166
           +SH  +  + + +IGY  +YHRV   S  I L    +SS H++  F+ L       G P 
Sbjct: 637 VSHFLLLGIPLRIIGYPTSYHRVVFLSSGIPLPIIGLSSYHRVSHFLSLGIPLPIIGIPL 696

Query: 167 PPVGYSYSAPR 199
           P +GY  S  R
Sbjct: 697 PIIGYPTSYHR 707


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 383 SEVMLDSVADMRVDTLVLLLYRNTSMFTYL-PQNQLSKDFLVSCCGSTPETLQDHLHQGP 559
           +  M+D++ + RV+ + LLL    SM  +L P+  L+    V  C +TP+      H  P
Sbjct: 427 NSAMMDALLNNRVEFVKLLLENGVSMGQFLTPERLLALYRGVRTCNATPDNNNRACHTTP 486

Query: 560 NSS 568
            ++
Sbjct: 487 GNN 489


>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 822 PNSHPPKAFPPNCHPPRIP 766
           P   PP + PP CHPP +P
Sbjct: 143 PPPPPPPSPPPPCHPPALP 161


>SB_47760| Best HMM Match : DUF1168 (HMM E-Value=2.1)
          Length = 438

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 600 NHKNEEEDTRNMCWV*ESLKKQALIINYSPTPSNP-IQPLQKPGSLTFNQNFPNP 761
           NHK EEED  ++ +V    K +A I    P+P  P  + +   G ++  +   NP
Sbjct: 249 NHKEEEEDL-DVAFVNPMFKNRAKITETEPSPITPEDESMASTGEISSEEGRVNP 302


>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
          Length = 1258

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 831 PFRPNSHPPKAFPPNCHPPRIP 766
           P  P    P ++ PN HPP++P
Sbjct: 254 PINPTPINPSSYQPNSHPPQLP 275


>SB_17309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 442 VQKHIYVHVPPPEPVEQRLPRILLWLHPRNITRSSSS 552
           V KH  +H P P P+  R   +  +L PR +T S ++
Sbjct: 67  VDKHNPIHNPSPTPLTLRYQSLQTFLAPRPVTLSQNA 103


>SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
 Frame = -3

Query: 462 NIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESI---RRVSAAKGNAAS 292
           N D+F  +++ + + R S T+S+I   +    +A    TT++++I   +   A++G    
Sbjct: 493 NKDIFRKQKTVQNTFRTSKTKSNIAELSMAVKSAARAKTTQSQNITKNKEEKASEGKGER 552

Query: 291 RKAT*GSRMTTNTTVL 244
           +K T  SR ++ T+ L
Sbjct: 553 KKNT--SRPSSVTSSL 566


>SB_47638| Best HMM Match : PPV_E2_N (HMM E-Value=9.1)
          Length = 349

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -3

Query: 534 NVSGVEPQQDTRKSLLNWFWGRYVNIDVFLYKRSTRVSTRISATESSI 391
           N  GVEPQ DTR  +L+ F  R  ++ +    R TR  T I +  S I
Sbjct: 303 NELGVEPQGDTRLQVLHGFGPRVDDLGLIGDSRKTR--TEIFSCSSGI 348


>SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06)
          Length = 1003

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 491 KDFLVSCCGSTPETLQDHLHQGPNSSHSYWPP*FPIQPQKRRRR 622
           +D   +  G+   T    +     +S S++PP  P+QP  RRRR
Sbjct: 313 EDIFENSSGTETPTSSTSVSLPSYNSSSFFPPEIPMQPSIRRRR 356


>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 380 ASEVMLDSVADMRVDTLVLLLYRNTSMFTYLPQNQLSKDFLV 505
           A +V  +   D++V  L  LL  NTSMF+   QN +SK  ++
Sbjct: 266 ARKVFTNKTQDIKVSKLTRLLVANTSMFS---QNLVSKSAVI 304


>SB_17436| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 718

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 513 VAPPQKHYKIIFIKGPTLPTPTGPHNFLSNHKNEEEDTRNM 635
           V PPQ++      +GP +P   GP    +  KN +E+   +
Sbjct: 28  VVPPQENAIQAQAQGPQMPAQNGPEKMAAQLKNLKEELETL 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,367,928
Number of Sequences: 59808
Number of extensions: 460644
Number of successful extensions: 1584
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1578
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)