Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30514
(836 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23230.1 68414.m02906 expressed protein 34 0.10
At5g28120.1 68418.m03396 hypothetical protein 30 1.7
At3g30816.1 68416.m03949 hypothetical protein 30 2.2
At2g06860.1 68415.m00768 Ulp1 protease family protein contains P... 30 2.2
At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At5g05320.1 68418.m00573 monooxygenase, putative (MO3) similar t... 29 5.1
At4g05300.1 68417.m00803 hypothetical protein 29 5.1
At2g43000.1 68415.m05336 no apical meristem (NAM) family protein... 28 6.7
At5g28110.1 68418.m03395 hypothetical protein 28 8.8
At4g26555.1 68417.m03826 immunophilin / FKBP-type peptidyl-proly... 28 8.8
At4g21900.1 68417.m03166 MATE efflux family protein similar to r... 28 8.8
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t... 28 8.8
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops... 28 8.8
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = -3
Query: 468 YVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 316
Y+N D FL + + +SA E+S++ Q AAA G S T ++S+ VS
Sbjct: 126 YINWDTFL----PSLLSSVSAAEASLSQGVQAAAATAGSSATSSQSVVPVS 172
>At5g28120.1 68418.m03396 hypothetical protein
Length = 506
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -3
Query: 441 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 289
++S R STRISA+E + S KGES T+ RR++ K + +R
Sbjct: 342 EKSVRGSTRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391
>At3g30816.1 68416.m03949 hypothetical protein
Length = 342
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 441 KRSTRVSTRISATESSITSEAQTAAAAKGESTTE--TESIRRVSAAKGNAASRK 286
K+S R STRISA+E + S KGEST T I +GN +++
Sbjct: 179 KKSVRGSTRISASEHTQGSPMDAILPIKGESTKNGVTRWITNGKVHRGNRWTKR 232
>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 938
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 438 RSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 286
+S R STRISA+E + S KGEST E+ RR KG++ +
Sbjct: 843 KSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDRRSVRPKGDSTDNQ 895
>At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger)
family protein contains a Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518
Length = 688
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +3
Query: 111 KCALSWYSPVWLWPMAALNLQWDTATPLPEVTQEASALPLSAADTELLYWWSFWI 275
KC L P L P +++QW + + + +L E+LY W+ W+
Sbjct: 262 KCLLPKAYPSHLPPYFLISVQWMNPDKISSLCSKLDSLWSEQPGQEVLYQWTDWL 316
>At5g05320.1 68418.m00573 monooxygenase, putative (MO3) similar to
GI:3426064; identical to cDNA monooxygenase 3, partial
GI:3426065
Length = 406
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 384 EAQTAAAAKGESTTETESIRRV-SAAKGNAASRKAT*GSRMTTNTTV 247
EA A KGE+ E ES RR+ K A SRK +TT+ TV
Sbjct: 319 EAMKAKNMKGETEDENESYRRIEDGLKKYAGSRKWRSIDLITTSYTV 365
>At4g05300.1 68417.m00803 hypothetical protein
Length = 387
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -3
Query: 441 KRSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 286
++S R STRISA+E + S KGEST E+ +R KG++ +
Sbjct: 301 EKSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDQRSVRPKGDSTDNQ 354
>At2g43000.1 68415.m05336 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 275
Score = 28.3 bits (60), Expect = 6.7
Identities = 29/101 (28%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Frame = +2
Query: 383 SEVMLDSVADM-RVDTLVLLLYRNTSMF--TYLPQNQLSKDFLVSCCGSTPETLQDHLHQ 553
S DS A V TL + R TS T LP N+ L C T DH
Sbjct: 145 STTKTDSPAQQAEVWTLCRIFKRVTSQRNPTILPPNRKPVITLTDTCSKTSSLDSDHTSH 204
Query: 554 GPNSSHSYWPP*FPIQPQKRRRRHS*YVLGLRKPEEASLDN 676
S S+ PP PQ + + +++G +P DN
Sbjct: 205 RTVDSMSHEPP----LPQPQNPYWNQHIVGFNQPTYTGNDN 241
>At5g28110.1 68418.m03395 hypothetical protein
Length = 493
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -3
Query: 441 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 289
++S R S RISA+E + S KGES T+ RR++ K + +R
Sbjct: 342 EKSVRGSIRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391
>At4g26555.1 68417.m03826 immunophilin / FKBP-type peptidyl-prolyl
cis-trans isomerase family protein similar to
FK506-binding protein (Peptidyl-prolyl cis-trans
isomerase) (PPiase) (Rotamase) (SP:P25138) [{Neisseria
meningitidis]; contains Pfam profile: PF00254 FKBP-type
peptidyl-prolyl cis-trans isomerases; similar to
FK506-binding protein 39 kDa (Peptidyl-prolyl cis-trans
isomerase) (PPiase) (EC 5.2.1.8) (SP:O74191)
{Schizosaccharomyces pombe}
Length = 207
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 833 FPSARIPTPQRPSPQIATHQEFPFGV-WKILIEG 735
FPS P PQ P++ + P GV ++ +IEG
Sbjct: 63 FPSLAAPVPQMKEPEVIRTLKLPSGVRYQEIIEG 96
>At4g21900.1 68417.m03166 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
MatE
Length = 1094
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -3
Query: 426 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT 280
VS+ IS ESS+T+ A+ AAAKG+ + ++ + A G + R T
Sbjct: 576 VSSGISPNESSVTAVAR-LAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 623
>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 182
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 836 KFPSARIPTPQRPSPQIAT 780
K PS ++PTP PSP + T
Sbjct: 43 KVPSPKVPTPSVPSPYVPT 61
>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
thaliana, EMBL:AC007020
Length = 745
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = -3
Query: 489 LNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 316
LN ++G ID+ RST + T+ S S SEA + ++TTE ESI +++
Sbjct: 689 LNSYFGTQQWIDL---ARSTGLQTQKSIPASKEISEALEEPTVECDTTTEEESIDKLN 743
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,722,278
Number of Sequences: 28952
Number of extensions: 347625
Number of successful extensions: 1327
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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