Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30513
(551 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P63162 Cluster: Small nuclear ribonucleoprotein-associa... 109 4e-23
UniRef50_Q4TAB6 Cluster: Chromosome undetermined SCAF7390, whole... 107 2e-22
UniRef50_UPI0000DA295F Cluster: PREDICTED: similar to small nucl... 99 3e-20
UniRef50_Q6P0Y5 Cluster: Putative uncharacterized protein; n=1; ... 94 2e-18
UniRef50_UPI00015561AA Cluster: PREDICTED: similar to Small nucl... 93 5e-18
UniRef50_Q9FI15 Cluster: Similarity to small nuclear ribonucleop... 83 3e-15
UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babe... 81 2e-14
UniRef50_Q55A45 Cluster: Putative small nuclear ribonucleopartic... 79 9e-14
UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2; Plasm... 72 1e-11
UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B, puta... 70 4e-11
UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3; Plasm... 69 1e-10
UniRef50_Q5CME6 Cluster: Similar to small nuclear ribonucleoprot... 68 1e-10
UniRef50_Q4P7M4 Cluster: Putative uncharacterized protein; n=1; ... 67 3e-10
UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167, w... 61 2e-08
UniRef50_Q4WP21 Cluster: Small nuclear ribonucleoprotein SmB, pu... 60 3e-08
UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associa... 60 4e-08
UniRef50_A2EG20 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 59 8e-08
UniRef50_Q10163 Cluster: Uncharacterized protein C26A3.08; n=38;... 57 2e-07
UniRef50_Q59KX5 Cluster: Potential spliceosomal snRNA Sm core bi... 56 5e-07
UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Re... 55 1e-06
UniRef50_A5E144 Cluster: Putative uncharacterized protein; n=1; ... 55 1e-06
UniRef50_A3LXX4 Cluster: Predicted protein; n=3; Saccharomycetac... 54 2e-06
UniRef50_UPI0000499A4F Cluster: small nuclear ribonucleoprotein ... 54 3e-06
UniRef50_Q6CWY1 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 53 5e-06
UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-... 46 8e-04
UniRef50_A7T7F0 Cluster: Predicted protein; n=3; Eumetazoa|Rep: ... 46 8e-04
UniRef50_Q4D159 Cluster: Small nuclear ribonucleoprotein protein... 44 0.003
UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm... 42 0.007
UniRef50_A2F7C1 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 41 0.017
UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core, ... 40 0.029
UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4; T... 40 0.051
UniRef50_UPI0000513250 Cluster: PREDICTED: similar to CG31950-PA... 39 0.067
UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm... 39 0.067
UniRef50_A2BIG9 Cluster: LSM domain-containing protein 1; n=14; ... 39 0.067
UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm... 39 0.067
UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11; Saccharomyc... 38 0.12
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 38 0.15
UniRef50_UPI0000D55DF4 Cluster: PREDICTED: similar to CG31950-PA... 38 0.20
UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis ... 38 0.20
UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog... 38 0.20
UniRef50_Q9BRA0 Cluster: LSM domain-containing protein 1; n=12; ... 37 0.27
UniRef50_Q014C2 Cluster: Small Nuclear ribonucleoprotein splicin... 37 0.36
UniRef50_Q0ULJ4 Cluster: Putative uncharacterized protein; n=1; ... 37 0.36
UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia... 36 0.47
UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm... 36 0.47
UniRef50_A4VDT4 Cluster: Putative uncharacterized protein; n=1; ... 36 0.47
UniRef50_A0CQT6 Cluster: Chromosome undetermined scaffold_24, wh... 36 0.47
UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm... 36 0.47
UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p... 36 0.63
UniRef50_Q5CLJ8 Cluster: U6 snRNA-associated sm-like protein; n=... 36 0.63
UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, wh... 36 0.63
UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1; Ae... 36 0.63
UniRef50_Q6NNL2 Cluster: At4g18372; n=4; Magnoliophyta|Rep: At4g... 36 0.83
UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella... 36 0.83
UniRef50_A7P4Z8 Cluster: Chromosome chr4 scaffold_6, whole genom... 36 0.83
UniRef50_Q4V620 Cluster: IP06106p; n=3; Sophophora|Rep: IP06106p... 36 0.83
UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, wh... 36 0.83
UniRef50_Q0UHH8 Cluster: Predicted protein; n=2; Pezizomycotina|... 36 0.83
UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm... 36 0.83
UniRef50_Q6QA14 Cluster: Lsm8p; n=6; Trypanosomatidae|Rep: Lsm8p... 35 1.1
UniRef50_A3FQL7 Cluster: Small nuclear ribonucleoprotein; n=2; C... 35 1.1
UniRef50_Q5K8A9 Cluster: RNA cap binding protein, putative; n=1;... 35 1.1
UniRef50_Q2HFG8 Cluster: Putative uncharacterized protein; n=1; ... 35 1.1
UniRef50_Q1DNR5 Cluster: Putative uncharacterized protein; n=1; ... 35 1.1
UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces cere... 35 1.4
UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm... 35 1.4
UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like pr... 35 1.4
UniRef50_Q7SG45 Cluster: Predicted protein; n=1; Neurospora cras... 34 1.9
UniRef50_A4RG53 Cluster: Predicted protein; n=1; Magnaporthe gri... 34 1.9
UniRef50_A3DP35 Cluster: Like-Sm ribonucleoprotein, core; n=1; S... 34 1.9
UniRef50_Q8SR04 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN D2; n=1... 34 2.5
UniRef50_O42978 Cluster: U6 snRNP-associated protein Lsm5; n=4; ... 34 2.5
UniRef50_A4RDX2 Cluster: Predicted protein; n=1; Magnaporthe gri... 34 2.5
UniRef50_A2QP90 Cluster: Contig An07c0280, complete genome; n=3;... 34 2.5
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 34 2.5
UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm... 34 2.5
UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1; Plasm... 33 3.3
UniRef50_A7AWS6 Cluster: Small nuclear ribonucleoprotein, putati... 33 3.3
UniRef50_A6RWH0 Cluster: Predicted protein; n=10; Pezizomycotina... 33 3.3
UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1; ... 33 3.3
UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homol... 33 4.4
UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1; ... 33 4.4
UniRef50_Q2UPT0 Cluster: Predicted protein; n=2; Aspergillus|Rep... 33 4.4
UniRef50_Q3LW01 Cluster: MRNA splicing factor; n=1; Bigelowiella... 33 5.8
UniRef50_Q4UC24 Cluster: U6 snRNA-associated Sm-like potein, put... 33 5.8
UniRef50_Q9Y4Y9 Cluster: U6 snRNA-associated Sm-like protein LSm... 33 5.8
UniRef50_Q0M0F8 Cluster: YhhN-like; n=1; Caulobacter sp. K31|Rep... 32 7.7
UniRef50_Q55DS0 Cluster: Putative uncharacterized protein; n=1; ... 32 7.7
UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative; ... 32 7.7
UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2; ... 32 7.7
UniRef50_Q8SS46 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN F; n=1;... 32 7.7
UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep... 32 7.7
>UniRef50_P63162 Cluster: Small nuclear ribonucleoprotein-associated
protein N; n=94; Eukaryota|Rep: Small nuclear
ribonucleoprotein-associated protein N - Homo sapiens
(Human)
Length = 240
Score = 109 bits (262), Expect = 4e-23
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.36
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>UniRef50_Q4TAB6 Cluster: Chromosome undetermined SCAF7390, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF7390,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 268
Score = 107 bits (256), Expect = 2e-22
Identities = 48/65 (73%), Positives = 57/65 (87%)
Frame = +1
Query: 64 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR 243
T+GK++KM QHI++R+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK +R
Sbjct: 9 TVGKSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPER 68
Query: 244 EEKRL 258
EEKR+
Sbjct: 69 EEKRV 73
Score = 33.1 bits (72), Expect = 4.4
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI 305
+ K+ LG VLLRGEN+VS+T+
Sbjct: 68 REEKRVLGLVLLRGENLVSMTV 89
>UniRef50_UPI0000DA295F Cluster: PREDICTED: similar to small nuclear
ribonucleoparticle-associated protein; n=1; Rattus
norvegicus|Rep: PREDICTED: similar to small nuclear
ribonucleoparticle-associated protein - Rattus
norvegicus
Length = 195
Score = 99 bits (238), Expect = 3e-20
Identities = 45/67 (67%), Positives = 53/67 (79%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR R LQD R FIG FKAFDKHMN IL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRTRCFLQDGRIFIGIFKAFDKHMNSILCDCDEFRKIKPKNEKQTE 60
Query: 241 REEKRLW 261
EEKR++
Sbjct: 61 CEEKRVF 67
>UniRef50_Q6P0Y5 Cluster: Putative uncharacterized protein; n=1;
Homo sapiens|Rep: Putative uncharacterized protein -
Homo sapiens (Human)
Length = 208
Score = 94.3 bits (224), Expect = 2e-18
Identities = 42/66 (63%), Positives = 54/66 (81%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+EFRK+K KN+K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 241 REEKRL 258
REEKR+
Sbjct: 101 REEKRV 106
>UniRef50_UPI00015561AA Cluster: PREDICTED: similar to Small nuclear
ribonucleoprotein polypeptide N; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to Small nuclear
ribonucleoprotein polypeptide N - Ornithorhynchus
anatinus
Length = 154
Score = 92.7 bits (220), Expect = 5e-18
Identities = 41/52 (78%), Positives = 47/52 (90%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIK 216
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK
Sbjct: 103 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIK 154
>UniRef50_Q9FI15 Cluster: Similarity to small nuclear
ribonucleoprotein; n=6; Viridiplantae|Rep: Similarity to
small nuclear ribonucleoprotein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 254
Score = 83.4 bits (197), Expect = 3e-15
Identities = 38/68 (55%), Positives = 49/68 (72%), Gaps = 3/68 (4%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKI---KSKNSK 231
M++ K++KM Q INYR+RV +QD R IG F AFD+HMNL+LGDCEEFRK+ K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 232 TADREEKR 255
+REE+R
Sbjct: 61 NEEREERR 68
Score = 32.3 bits (70), Expect = 7.7
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 231 NCRQRRKKTLGFVLLRGENIVSLTI 305
N + ++TLG VLLRGE ++S+T+
Sbjct: 61 NEEREERRTLGLVLLRGEEVISMTV 85
>UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babesia
bovis|Rep: Sm domain containing protein - Babesia bovis
Length = 159
Score = 81.0 bits (191), Expect = 2e-14
Identities = 37/62 (59%), Positives = 43/62 (69%)
Frame = +1
Query: 70 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREE 249
GKN +MQQ + YRVRV ++D R F+GTF AFDKHMNL+L DCEEFR K K E
Sbjct: 3 GKNTRMQQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKVEL 62
Query: 250 KR 255
KR
Sbjct: 63 KR 64
Score = 34.7 bits (76), Expect = 1.4
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +3
Query: 249 KKTLGFVLLRGENIVSLT 302
K+TLGF++LRGENIVS T
Sbjct: 63 KRTLGFIMLRGENIVSFT 80
>UniRef50_Q55A45 Cluster: Putative small nuclear
ribonucleoparticle-associated protein; n=2;
Dictyostelium discoideum|Rep: Putative small nuclear
ribonucleoparticle-associated protein - Dictyostelium
discoideum AX4
Length = 274
Score = 78.6 bits (185), Expect = 9e-14
Identities = 35/61 (57%), Positives = 47/61 (77%)
Frame = +1
Query: 73 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK 252
K++KM Q+INYR+RV +QD R +G F AFDKHMN+++ D EEFR+I+ K + DREEK
Sbjct: 6 KSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKE--DREEK 63
Query: 253 R 255
R
Sbjct: 64 R 64
>UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2;
Plasmodium|Rep: Ribonucleoprotein, putative - Plasmodium
falciparum (isolate 3D7)
Length = 201
Score = 71.7 bits (168), Expect = 1e-11
Identities = 30/64 (46%), Positives = 49/64 (76%)
Frame = +1
Query: 67 IGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE 246
+GKN++++ + YRVRV + D+R F+GTF ++D+HMN++L D EEFRK+KS+ + +E
Sbjct: 1 MGKNSRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSL--KE 58
Query: 247 EKRL 258
KR+
Sbjct: 59 IKRV 62
>UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B,
putative; n=3; Eukaryota|Rep: Small nuclear
ribonucleoprotein B, putative - Theileria parva
Length = 155
Score = 69.7 bits (163), Expect = 4e-11
Identities = 29/57 (50%), Positives = 39/57 (68%)
Frame = +1
Query: 70 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
GKN +MQ + Y VRV L+D+R F+GT A+DK+MNL+L DCEEFR K+ +
Sbjct: 3 GKNTRMQHWLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNRTE 59
Score = 36.3 bits (80), Expect = 0.47
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +3
Query: 237 RQRRKKTLGFVLLRGENIVSLT 302
R K+TLGFVLLRGENIVS T
Sbjct: 57 RTEVKRTLGFVLLRGENIVSFT 78
>UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3;
Plasmodium (Vinckeia)|Rep: Ribonucleoprotein, putative -
Plasmodium berghei
Length = 194
Score = 68.5 bits (160), Expect = 1e-10
Identities = 25/54 (46%), Positives = 43/54 (79%)
Frame = +1
Query: 67 IGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNS 228
+GKN +++ + YRVRV + D+R ++GTF ++D+HMN++L D EEFR++K+K +
Sbjct: 1 MGKNYRLESWLQYRVRVTISDTRYYVGTFLSYDRHMNIVLVDAEEFRRVKNKEN 54
>UniRef50_Q5CME6 Cluster: Similar to small nuclear
ribonucleoprotein; n=2; Cryptosporidium|Rep: Similar to
small nuclear ribonucleoprotein - Cryptosporidium
hominis
Length = 139
Score = 68.1 bits (159), Expect = 1e-10
Identities = 25/44 (56%), Positives = 36/44 (81%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIK 216
MQ++INYR+RV +QD R +G AFD+HMNL+L DC+E+R++K
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVK 44
>UniRef50_Q4P7M4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 232
Score = 66.9 bits (156), Expect = 3e-10
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +1
Query: 73 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 231
K KM INYR+R+ L DSR +G AFD HMNL+L D +E+RK+KS+ +K
Sbjct: 7 KGGKMMSLINYRLRITLNDSRQIVGQLLAFDAHMNLVLADSQEYRKVKSRKAK 59
Score = 32.3 bits (70), Expect = 7.7
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +3
Query: 246 RKKTLGFVLLRGENIVSLTI 305
+K+TLG ++LRGENIVS+ I
Sbjct: 96 QKRTLGLLILRGENIVSMAI 115
>UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167,
whole genome shotgun sequence; n=3;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_167, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 138
Score = 60.9 bits (141), Expect = 2e-08
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +1
Query: 67 IGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 207
+ + +K Q I+YRVR+ L D R +GTF AFDKH+N+IL +CEE+R
Sbjct: 1 MSQKSKFFQWIDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEEYR 47
>UniRef50_Q4WP21 Cluster: Small nuclear ribonucleoprotein SmB,
putative; n=2; Eukaryota|Rep: Small nuclear
ribonucleoprotein SmB, putative - Aspergillus fumigatus
(Sartorya fumigata)
Length = 357
Score = 60.5 bits (140), Expect = 3e-08
Identities = 26/47 (55%), Positives = 32/47 (68%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTA 237
INYR+R+ L D R G AFDKHMNL+L D EEFR++K K+ A
Sbjct: 131 INYRMRITLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAA 177
>UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associated
protein B; n=4; Saccharomycetales|Rep: Small nuclear
ribonucleoprotein-associated protein B - Saccharomyces
cerevisiae (Baker's yeast)
Length = 196
Score = 59.7 bits (138), Expect = 4e-08
Identities = 25/66 (37%), Positives = 43/66 (65%)
Frame = +1
Query: 58 KMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTA 237
K+ + ++++ I+Y++RV+ QD R +IG AFDKHMNL+L +C E R K++ K
Sbjct: 3 KIQVAHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLR 62
Query: 238 DREEKR 255
R++ +
Sbjct: 63 PRKDSK 68
>UniRef50_A2EG20 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 158
Score = 58.8 bits (136), Expect = 8e-08
Identities = 23/76 (30%), Positives = 44/76 (57%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
M + +K+ + IN RV+V++ D R F+G AFD H N++L DCEE+R++ + +
Sbjct: 1 MQAPRGSKLSKFINSRVKVVISDHRYFVGQMLAFDTHSNIVLKDCEEYRRLNRRKAGELQ 60
Query: 241 REEKRLWVLFFYVEKI 288
++ + ++ E +
Sbjct: 61 EAKRNIGLMILRGETV 76
>UniRef50_Q10163 Cluster: Uncharacterized protein C26A3.08; n=38;
Fungi/Metazoa group|Rep: Uncharacterized protein
C26A3.08 - Schizosaccharomyces pombe (Fission yeast)
Length = 147
Score = 57.2 bits (132), Expect = 2e-07
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +1
Query: 82 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKN-SKTADREEKRL 258
KM +N+ + V +D RTF+G AFD MNL+L DC+E+R IK +N + EEKR+
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRM 64
>UniRef50_Q59KX5 Cluster: Potential spliceosomal snRNA Sm core
binding protein B/B'; n=1; Candida albicans|Rep:
Potential spliceosomal snRNA Sm core binding protein
B/B' - Candida albicans (Yeast)
Length = 110
Score = 56.0 bits (129), Expect = 5e-07
Identities = 24/49 (48%), Positives = 34/49 (69%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 231
M IN+R+++I D+RT++GT +FDKHMNL+L D EE R K S+
Sbjct: 1 MSDLINFRIKIITIDNRTYLGTLLSFDKHMNLVLSDTEESRITKKSYSQ 49
>UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Rep:
AER432Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 158
Score = 55.2 bits (127), Expect = 1e-06
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +1
Query: 64 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 207
T+ + ++ I+Y++RV+ QD R ++GT AFD HMNL+L DC E R
Sbjct: 4 TVSHRSTLKDLIDYKLRVLSQDGRVYVGTLLAFDAHMNLVLADCVEER 51
>UniRef50_A5E144 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 152
Score = 55.2 bits (127), Expect = 1e-06
Identities = 23/56 (41%), Positives = 37/56 (66%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK 252
M INYR+R++ D+RT++G+ +FDKH+NL+L D EE R K + ++ +K
Sbjct: 1 MSDLINYRLRILTVDNRTYVGSLLSFDKHLNLVLSDTEESRITKKSWIEMKNKSQK 56
>UniRef50_A3LXX4 Cluster: Predicted protein; n=3;
Saccharomycetaceae|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 142
Score = 54.0 bits (124), Expect = 2e-06
Identities = 25/52 (48%), Positives = 34/52 (65%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIK 216
+ I K KM I+YR+++ D+R FIG+ AFDKH+NL+L D EE R K
Sbjct: 4 LPITKTTKMSDLIHYRLKISTIDNRFFIGSLLAFDKHLNLVLSDTEETRITK 55
>UniRef50_UPI0000499A4F Cluster: small nuclear ribonucleoprotein F;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein F - Entamoeba histolytica HM-1:IMSS
Length = 205
Score = 53.6 bits (123), Expect = 3e-06
Identities = 23/65 (35%), Positives = 42/65 (64%)
Frame = +1
Query: 73 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK 252
K++K+ ++INY ++V + R F+G F AFDK+MN+IL + E R + +K ++ E+
Sbjct: 4 KSSKISKYINYTIKVTTIEGRNFVGKFLAFDKYMNMILSETIEKRTVINKKTREEKEIER 63
Query: 253 RLWVL 267
L ++
Sbjct: 64 SLGMM 68
>UniRef50_Q6CWY1 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome B of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 191
Score = 52.8 bits (121), Expect = 5e-06
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = +1
Query: 73 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 207
K K+ I+YR+RV D R +IG AFD +MNL++GDC E R
Sbjct: 9 KETKLSDLIDYRIRVATHDGRVYIGQLMAFDAYMNLVMGDCVEER 53
>UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-PA
- Drosophila melanogaster (Fruit fly)
Length = 95
Score = 45.6 bits (103), Expect = 8e-04
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ +IN+ V +I D R FIGT K FD+ +N+I+ +C E
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHE 42
>UniRef50_A7T7F0 Cluster: Predicted protein; n=3; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 86
Score = 45.6 bits (103), Expect = 8e-04
Identities = 22/59 (37%), Positives = 35/59 (59%)
Frame = +1
Query: 82 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRL 258
+++ +N +RV + D RT IG+F DK N+ILG C+EF + S D+E+ R+
Sbjct: 3 ELESWLNKLMRVKISDGRTLIGSFLCTDKDRNIILGSCQEFSLLLSLG---VDKEDPRI 58
>UniRef50_Q4D159 Cluster: Small nuclear ribonucleoprotein protein,
putative; n=5; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein protein, putative - Trypanosoma cruzi
Length = 114
Score = 43.6 bits (98), Expect = 0.003
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKR 255
M +IN +R++L D R G +D+HMN++LGD E R+ ++K K A +R
Sbjct: 6 MLHNINRTLRIVLIDGRELTGKLLVYDRHMNVVLGDATESRE-ETKKMKEAGISPQR 61
>UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=2; Saccharomyces cerevisiae|Rep: U6 snRNA-associated
Sm-like protein LSm3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 89
Score = 42.3 bits (95), Expect = 0.007
Identities = 20/62 (32%), Positives = 37/62 (59%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRLWV 264
++ +++ RV + L+ +RT +GT +AFD H N++L D E I N++ E+R +
Sbjct: 8 LKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE--TIYQLNNEELSESERRCEM 65
Query: 265 LF 270
+F
Sbjct: 66 VF 67
>UniRef50_A2F7C1 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 99
Score = 41.1 bits (92), Expect = 0.017
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 37 YLPN--HSDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 204
Y+P+ H + G ++ +N ++R+ L D R ++GTF AFDK N +L +E+
Sbjct: 6 YIPSILHLPEHPTGAVKEVMDLLNTQLRLELNDERVYVGTFTAFDKFGNFVLTKADEY 63
>UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core,
putative; n=2; Culicidae|Rep: Small nuclear
ribonucleoprotein, core, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 162
Score = 40.3 bits (90), Expect = 0.029
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 40 LPNHSDKMTIGKN-NKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
L N + + I + + ++ ++N V +I D R F+GT K FD+ +N+IL + E
Sbjct: 55 LSNRNQRYDIHETMSGLESYVNTTVSIITADGRNFVGTLKGFDQTINIILDESHE 109
>UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4;
Thermoplasmatales|Rep: Small nuclear ribonucleoprotein -
Thermoplasma volcanium
Length = 71
Score = 39.5 bits (88), Expect = 0.051
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
+++ +N RV ++L+D+R GT +D +MN++L D +E
Sbjct: 8 LEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDDVDE 46
>UniRef50_UPI0000513250 Cluster: PREDICTED: similar to CG31950-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to
CG31950-PA - Apis mellifera
Length = 103
Score = 39.1 bits (87), Expect = 0.067
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 82 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 204
K++ +N +R+ + D R IG F D+ N+ILG C EF
Sbjct: 35 KLRGWLNRNLRIKMTDGRVLIGAFLCTDRDANVILGSCSEF 75
>UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Plasmodium vivax
Length = 95
Score = 39.1 bits (87), Expect = 0.067
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ ++ + VI DSR F G K FD+ N+ILG+C E
Sbjct: 6 IESYLENEILVITNDSRIFTGKLKGFDQTTNIILGNCYE 44
>UniRef50_A2BIG9 Cluster: LSM domain-containing protein 1; n=14;
Euteleostomi|Rep: LSM domain-containing protein 1 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 109
Score = 39.1 bits (87), Expect = 0.067
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 82 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK 210
K++ +N +R+ + D RT +G F D+ N+ILG +EF K
Sbjct: 27 KLENLLNKSMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEFLK 69
>UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=23; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm8 - Homo sapiens (Human)
Length = 96
Score = 39.1 bits (87), Expect = 0.067
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11;
Saccharomycetales|Rep: Sm-like protein LSm1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 172
Score = 38.3 bits (85), Expect = 0.12
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE 246
++ ++ V+L+D R G + FD++ NLIL DC E R S+ +K A+ +
Sbjct: 50 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVE-RIYFSEENKYAEED 98
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 37.9 bits (84), Expect = 0.15
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
+N V + L+ R F G K+FD HMNL+L D EE
Sbjct: 22 LNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEE 56
>UniRef50_UPI0000D55DF4 Cluster: PREDICTED: similar to CG31950-PA;
n=2; Endopterygota|Rep: PREDICTED: similar to CG31950-PA
- Tribolium castaneum
Length = 134
Score = 37.5 bits (83), Expect = 0.20
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +1
Query: 82 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRL 258
K++ +N +R+ + D R +G F D+ N+ILG C E+ + T EE R+
Sbjct: 38 KLRSWLNKSLRIQMFDGRVLVGVFLCTDRDANVILGSCTEYLPAEDNGDGTI--EEPRM 94
>UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 84
Score = 37.5 bits (83), Expect = 0.20
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +1
Query: 106 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRLWVLFFYVEK 285
RV+V +Q+ + G A+D+H N+ILGD E KN K + ++ +LF ++
Sbjct: 18 RVKVKVQEGQELEGVLHAYDEHYNIILGDVLESIMGLDKNGKFIPVRQNQIDMLFVRGDR 77
Query: 286 I 288
I
Sbjct: 78 I 78
>UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog;
n=5; Thermoproteaceae|Rep: Small nuclear
ribonucleoprotein homolog - Pyrobaculum aerophilum
Length = 80
Score = 37.5 bits (83), Expect = 0.20
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
+Q I +V V L+DS G ++FD+H+NL+L D EE
Sbjct: 16 LQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEE 54
>UniRef50_Q9BRA0 Cluster: LSM domain-containing protein 1; n=12;
Theria|Rep: LSM domain-containing protein 1 - Homo
sapiens (Human)
Length = 125
Score = 37.1 bits (82), Expect = 0.27
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 82 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK 210
+++ +N +R+ + D RT +G F D+ N+ILG +EF K
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLK 86
>UniRef50_Q014C2 Cluster: Small Nuclear ribonucleoprotein splicing
factor; n=1; Ostreococcus tauri|Rep: Small Nuclear
ribonucleoprotein splicing factor - Ostreococcus tauri
Length = 110
Score = 36.7 bits (81), Expect = 0.36
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ RV V+ D R +GT + FD+ N+IL DC E
Sbjct: 12 VHARVHVLTNDGRHVVGTLRGFDQVTNVILEDCAE 46
>UniRef50_Q0ULJ4 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 234
Score = 36.7 bits (81), Expect = 0.36
Identities = 13/57 (22%), Positives = 34/57 (59%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRLWVL 267
++ +V V+L+D + +IG +++D+ NL+L +C E ++ +++ + W++
Sbjct: 101 VDKKVDVLLRDEKEYIGILRSYDQFANLVLTECHERIAARNPDAEPSSAPSVPRWLI 157
>UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_122_3813_3433 - Giardia lamblia ATCC
50803
Length = 126
Score = 36.3 bits (80), Expect = 0.47
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +1
Query: 106 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
RV V+LQ++ + G +FD+HMNLIL + EE
Sbjct: 64 RVSVLLQNNSSITGLLASFDEHMNLILINAEE 95
>UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Piroplasmida|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Theileria parva
Length = 94
Score = 36.3 bits (80), Expect = 0.47
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++Q I V VI D R F+G K FD+ NL+L +C E
Sbjct: 5 LEQFIECSVFVISVDGRVFVGVLKGFDQLTNLVLYNCLE 43
>UniRef50_A4VDT4 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 107
Score = 36.3 bits (80), Expect = 0.47
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 79 NKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKT 234
N +++ + ++++I D + IG K D+ +N IL DC E N+KT
Sbjct: 15 NPLEKLLFKKIQIITTDGKVLIGILKGLDQALNSILSDCVERVFSSENNTKT 66
>UniRef50_A0CQT6 Cluster: Chromosome undetermined scaffold_24, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_24,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 152
Score = 36.3 bits (80), Expect = 0.47
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Frame = +1
Query: 121 LQDSRTFIGTFKAFDKHMNLILGDCEEF-----RKIKSKNSKTADRE-EKRLWVLFFYVE 282
L+++R +G KAFD+HMN+IL + E ++ K K+ R+ + + ++F+Y+
Sbjct: 76 LRNNRKHLGRVKAFDRHMNMILENLTEMWIEISKETKGKSPCYKQRKIQNQYKIIFYYIP 135
Query: 283 KI 288
K+
Sbjct: 136 KM 137
>UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=5; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm5 - Saccharomyces cerevisiae (Baker's yeast)
Length = 93
Score = 36.3 bits (80), Expect = 0.47
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF---RKIKSKNSKTADREEKRL 258
IN +V ++LQ +R F GT FD +N+IL D E+ + +S+N K + L
Sbjct: 16 INQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRML 72
>UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p -
Drosophila melanogaster (Fruit fly)
Length = 103
Score = 35.9 bits (79), Expect = 0.63
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ +V V +++ R G AFD+H+N++LGD EE
Sbjct: 26 LDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEE 60
>UniRef50_Q5CLJ8 Cluster: U6 snRNA-associated sm-like protein; n=2;
Cryptosporidium|Rep: U6 snRNA-associated sm-like protein
- Cryptosporidium hominis
Length = 98
Score = 35.9 bits (79), Expect = 0.63
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = +1
Query: 76 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKN 225
++ ++Q IN V V+ D++ ++G FD+ N++L +C E KI +K+
Sbjct: 3 SSTLEQFINKTVSVLTVDNKVYVGNLVGFDQLTNIVLQNCSE--KIYNKD 50
>UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 83
Score = 35.9 bits (79), Expect = 0.63
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 82 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
K+Q HIN V + Q R GT +FD +NL+L + E
Sbjct: 11 KLQSHINKEVVIQFQGGRQVKGTLLSFDNQLNLVLDEVRE 50
>UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1;
Aeropyrum pernix|Rep: Putative snRNP Sm-like protein -
Aeropyrum pernix
Length = 77
Score = 35.9 bits (79), Expect = 0.63
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 52 SDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
S +T+ M +++ V V L+ G K +D+H+N+ILGD EE
Sbjct: 2 SGPITLPTLRMMLDYVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEE 51
>UniRef50_Q6NNL2 Cluster: At4g18372; n=4; Magnoliophyta|Rep:
At4g18372 - Arabidopsis thaliana (Mouse-ear cress)
Length = 78
Score = 35.5 bits (78), Expect = 0.83
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 121 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKI-KSKNSKTADR 243
++D R F+G F DK N+IL D E+R I +S S T R
Sbjct: 5 IKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSSPSPTEQR 46
>UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 101
Score = 35.5 bits (78), Expect = 0.83
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRLWV 264
+N ++ + D+ F G + FDKH NL+L D E K ++ ++++ + +EK +
Sbjct: 27 LNSKIIISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSLKKKVVIKEKFIPK 86
Query: 265 LFF 273
LFF
Sbjct: 87 LFF 89
>UniRef50_A7P4Z8 Cluster: Chromosome chr4 scaffold_6, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr4 scaffold_6, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 145
Score = 35.5 bits (78), Expect = 0.83
Identities = 23/75 (30%), Positives = 41/75 (54%)
Frame = +1
Query: 43 PNHSDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSK 222
PN S+ +T K++ + R+ V + D R F+G+F DK N+IL D E+R ++
Sbjct: 51 PNGSNPVT-----KVRMLLFRRMLVGVSDGRFFLGSFHCMDKQGNIILQDTVEYR--STR 103
Query: 223 NSKTADREEKRLWVL 267
S + E++ L ++
Sbjct: 104 RSSPSPMEQRCLGLI 118
>UniRef50_Q4V620 Cluster: IP06106p; n=3; Sophophora|Rep: IP06106p -
Drosophila melanogaster (Fruit fly)
Length = 121
Score = 35.5 bits (78), Expect = 0.83
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 204
+T G+ K+Q+ + +R+++ D R +G F D+ N++L C E+
Sbjct: 38 LTPGRR-KLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEY 84
>UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_33,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 104
Score = 35.5 bits (78), Expect = 0.83
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 70 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
G + ++ R+++ L RT IGT FD MNL+L C+E
Sbjct: 13 GYQADLNKYFGKRLKIKLNAKRTIIGTVIGFDIFMNLVLDHCKE 56
>UniRef50_Q0UHH8 Cluster: Predicted protein; n=2;
Pezizomycotina|Rep: Predicted protein - Phaeosphaeria
nodorum (Septoria nodorum)
Length = 98
Score = 35.5 bits (78), Expect = 0.83
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE 246
+ ++N RV V+ D RT IGT + D MNL+L + E R I+ + + E
Sbjct: 3 LNAYLNKRVTVLTLDGRTMIGTLFSCDGSMNLVLQEAVE-RIIRPREEEVPSEE 55
>UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=39; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm3 - Homo sapiens (Human)
Length = 102
Score = 35.5 bits (78), Expect = 0.83
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>UniRef50_Q6QA14 Cluster: Lsm8p; n=6; Trypanosomatidae|Rep: Lsm8p -
Trypanosoma brucei
Length = 129
Score = 35.1 bits (77), Expect = 1.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
+ Q++ RV V+ D R +G A D+ MNL+L C E
Sbjct: 2 LSQYLRRRVSVVTVDGRYLVGVLHAADQLMNLVLTSCAE 40
>UniRef50_A3FQL7 Cluster: Small nuclear ribonucleoprotein; n=2;
Cryptosporidium|Rep: Small nuclear ribonucleoprotein -
Cryptosporidium parvum Iowa II
Length = 106
Score = 35.1 bits (77), Expect = 1.1
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 100 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 231
N ++ V +++R +G KAFD+H NL+L D E K+ K
Sbjct: 32 NTQILVNCRNNRKILGRVKAFDRHCNLLLTDAREIWTESMKSGK 75
>UniRef50_Q5K8A9 Cluster: RNA cap binding protein, putative; n=1;
Filobasidiella neoformans|Rep: RNA cap binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 135
Score = 35.1 bits (77), Expect = 1.1
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ +V VIL+D R IG F+++D+ N +L C E
Sbjct: 17 VDKKVLVILRDGRKLIGLFRSYDQFANFLLESCVE 51
>UniRef50_Q2HFG8 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 189
Score = 35.1 bits (77), Expect = 1.1
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 207
+++ IN +RV DSR F GTF D NLIL E+R
Sbjct: 17 LERLINKNLRVTTTDSRMFWGTFVCTDHESNLILKHAYEYR 57
>UniRef50_Q1DNR5 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 101
Score = 35.1 bits (77), Expect = 1.1
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 207
++ +N VR+ D+R F+G FK D N+IL + E+R
Sbjct: 10 LESLLNRTVRLHTSDTRLFVGLFKCTDNDRNIILSNTYEYR 50
>UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like; n=1; Debaryomyces
hansenii|Rep: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like - Debaryomyces hansenii
(Yeast) (Torulaspora hansenii)
Length = 93
Score = 34.7 bits (76), Expect = 1.4
Identities = 12/40 (30%), Positives = 27/40 (67%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 204
+ + I ++++V++ + + F GT FD ++N++L + EEF
Sbjct: 27 IDKSIGHKIQVLMTNDKEFKGTLIGFDDYVNMVLENVEEF 66
>UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm;
n=1; Aeropyrum pernix|Rep: Putative small nucleolar RNP
protein Sm - Aeropyrum pernix
Length = 94
Score = 34.7 bits (76), Expect = 1.4
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 58 KMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
K + +++H+N ++ V L+D ++G A D MNLIL D E
Sbjct: 7 KQLVNPFKYLKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIE 54
>UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm3; n=8; Ascomycota|Rep: Probable U6
snRNA-associated Sm-like protein LSm3 -
Schizosaccharomyces pombe (Fission yeast)
Length = 93
Score = 34.7 bits (76), Expect = 1.4
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 109 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRL 258
V V L+ R G A+D+H+N++LGD EE I D+ K +
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTI 71
>UniRef50_Q7SG45 Cluster: Predicted protein; n=1; Neurospora
crassa|Rep: Predicted protein - Neurospora crassa
Length = 178
Score = 34.3 bits (75), Expect = 1.9
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = +1
Query: 22 PNI**YLPNHSDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
PNI +LP D T N+ + N +RV + D R F G FK D N+IL E
Sbjct: 5 PNIT-FLPEDRDDATDWLNSLL----NKNLRVSVTDGRMFWGQFKCVDAESNIILHSAYE 59
Query: 202 FR 207
+R
Sbjct: 60 YR 61
>UniRef50_A4RG53 Cluster: Predicted protein; n=1; Magnaporthe
grisea|Rep: Predicted protein - Magnaporthe grisea (Rice
blast fungus) (Pyricularia grisea)
Length = 128
Score = 34.3 bits (75), Expect = 1.9
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 207
+N +RV D+R F G FK D NLIL E+R
Sbjct: 14 LNKYLRVTTTDTRMFYGVFKCTDPDRNLILAHAHEYR 50
>UniRef50_A3DP35 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Staphylothermus marinus F1|Rep: Like-Sm
ribonucleoprotein, core - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 91
Score = 34.3 bits (75), Expect = 1.9
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 204
++ +N V V ++D +IGT D MN++L +C+E+
Sbjct: 15 LKSAVNQIVLVKIKDGHEYIGTLNMVDHTMNVVLSNCQEY 54
>UniRef50_Q8SR04 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN D2; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN D2 - Encephalitozoon cuniculi
Length = 135
Score = 33.9 bits (74), Expect = 2.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 109 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE 246
V V L+ +R +G A+D+H NL++ D +E + KN R+
Sbjct: 35 VLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGKNKGRKKRQ 80
>UniRef50_O42978 Cluster: U6 snRNP-associated protein Lsm5; n=4;
Eukaryota|Rep: U6 snRNP-associated protein Lsm5 -
Schizosaccharomyces pombe (Fission yeast)
Length = 80
Score = 33.9 bits (74), Expect = 2.5
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MTI + + I + VI++ R F GT FD ++N++L D E+ + K ++
Sbjct: 3 MTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE 62
>UniRef50_A4RDX2 Cluster: Predicted protein; n=1; Magnaporthe
grisea|Rep: Predicted protein - Magnaporthe grisea (Rice
blast fungus) (Pyricularia grisea)
Length = 992
Score = 33.9 bits (74), Expect = 2.5
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -3
Query: 480 LVPCVVEMARLLLWQDLEDPEVLRPGQCLYQQHEHFQARP*LPVRE 343
++P V++ A LLLWQ+ PE LRPG + E+ + L R+
Sbjct: 662 VMPQVLKAAGLLLWQEGRSPEALRPGTYVPLNAENLRVHTELQQRD 707
>UniRef50_A2QP90 Cluster: Contig An07c0280, complete genome; n=3;
Trichocomaceae|Rep: Contig An07c0280, complete genome -
Aspergillus niger
Length = 275
Score = 33.9 bits (74), Expect = 2.5
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 207
I +RV D+R F+GTFK D N+IL E+R
Sbjct: 14 IGRTLRVHATDTRIFVGTFKCTDAARNIILASTYEYR 50
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 33.9 bits (74), Expect = 2.5
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
+ + IN V + L+ ++T G FD+HMNL+L EE
Sbjct: 10 LDESINQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEE 48
>UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=1; Schizosaccharomyces pombe|Rep: U6 snRNA-associated
Sm-like protein LSm8 - Schizosaccharomyces pombe
(Fission yeast)
Length = 94
Score = 33.9 bits (74), Expect = 2.5
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 106 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
RV+VI D R +G+ K FD NLIL D E
Sbjct: 10 RVQVITNDGRVVLGSLKGFDHTTNLILSDSFE 41
>UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 74
Score = 33.5 bits (73), Expect = 3.3
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 133 RTFIGTFKAFDKHMNLILGDCEEFRK--IKSKNSKTADREEKRLWVLF 270
R IG A+D H+N+IL + E K +K + +T + E+ L ++F
Sbjct: 13 RELIGKLDAYDNHLNMILSNVRETYKYSVKENDEETVKKMERNLDMVF 60
>UniRef50_A7AWS6 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Babesia bovis|Rep: Small nuclear ribonucleoprotein,
putative - Babesia bovis
Length = 162
Score = 33.5 bits (73), Expect = 3.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 100 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
N +V + + +R +G KAFD+H N+IL D E
Sbjct: 90 NSQVLINCRSNRKLLGRVKAFDRHFNMILTDVRE 123
>UniRef50_A6RWH0 Cluster: Predicted protein; n=10;
Pezizomycotina|Rep: Predicted protein - Botryotinia
fuckeliana B05.10
Length = 98
Score = 33.5 bits (73), Expect = 3.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
+ ++N +V ++ DSRT +GT + D+ NL+L E
Sbjct: 3 LSSYVNKKVLILTADSRTLVGTLLSCDQQTNLVLSQTIE 41
>UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1;
uncultured crenarchaeote|Rep: Putative uncharacterized
protein - uncultured crenarchaeote
Length = 89
Score = 33.5 bits (73), Expect = 3.3
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR 243
+Q+ + V V L+ R+ G K FDK MN+++ + E + +S N+ +++
Sbjct: 11 LQESVGKIVLVKLKGRRSVKGKIKGFDKQMNIVITEATEVIEQQSNNNDNSEK 63
>UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homolog,
U6 small nuclear RNA associated; n=3; Homo/Pan/Gorilla
group|Rep: PREDICTED: similar to LSM3 homolog, U6 small
nuclear RNA associated - Homo sapiens
Length = 101
Score = 33.1 bits (72), Expect = 4.4
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 106 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
R+ V +++ R G +D+H+N+ILGD EE
Sbjct: 27 RICVKMRNDRELRGRLHTYDQHLNMILGDVEE 58
>UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 129
Score = 33.1 bits (72), Expect = 4.4
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ ++ V+L+D R FIG + FD+ N++L D E
Sbjct: 9 VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIE 43
>UniRef50_Q2UPT0 Cluster: Predicted protein; n=2; Aspergillus|Rep:
Predicted protein - Aspergillus oryzae
Length = 118
Score = 33.1 bits (72), Expect = 4.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 207
++ I +RV D+R F+G FK D N+IL E+R
Sbjct: 10 LESLIGQTLRVHATDTRIFVGAFKCTDSARNIILASTYEYR 50
>UniRef50_Q3LW01 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 82
Score = 32.7 bits (71), Expect = 5.8
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFK------AFDKHMNLILGDCEEFRKIKSKNSKTADRE 246
++++IN R+ ++ ++ G +K A+DK MNL+L D EE+ I K R
Sbjct: 8 LKKYINKRINIVTKNYDRINGRYKKFYRLLAYDKFMNLVLSDVEEY--INDKKDSQEIRR 65
Query: 247 EKRLWVL 267
L VL
Sbjct: 66 VLGLMVL 72
>UniRef50_Q4UC24 Cluster: U6 snRNA-associated Sm-like potein,
putative; n=1; Theileria annulata|Rep: U6
snRNA-associated Sm-like potein, putative - Theileria
annulata
Length = 113
Score = 32.7 bits (71), Expect = 5.8
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 109 VRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
V VI D R F+G K FD+ NL+L +C E
Sbjct: 20 VFVISVDGRVFVGVLKGFDQLTNLVLYNCLE 50
>UniRef50_Q9Y4Y9 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=27; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm5 - Homo sapiens (Human)
Length = 91
Score = 32.7 bits (71), Expect = 5.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 204
I R+ ++++ + +GT FD +N++L D EF
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF 57
>UniRef50_Q0M0F8 Cluster: YhhN-like; n=1; Caulobacter sp. K31|Rep:
YhhN-like - Caulobacter sp. K31
Length = 210
Score = 32.3 bits (70), Expect = 7.7
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -3
Query: 540 GHPSWGLLAFEEEQKVDHDF--LVPCVVEMARLLLWQDLEDPEVLRPGQCLY 391
GH ++GLL + E VD F P VV A ++LW+ L+P LY
Sbjct: 86 GHVAYGLLFWRERGAVDGAFWATAPLVVLAAAVMLWRLWPSLGALKPAVALY 137
>UniRef50_Q55DS0 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 114
Score = 32.3 bits (70), Expect = 7.7
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 40 LPNH--SDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL 186
+ NH ++ +T K+Q+ +++ +++I +R G F FDK N++L
Sbjct: 11 IENHEPNESITSEAIKKVQEWMDHEIQIIATGNRMIKGVFTCFDKQQNILL 61
>UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative;
n=2; Theileria|Rep: U6 snRNA-associated protein,
putative - Theileria parva
Length = 104
Score = 32.3 bits (70), Expect = 7.7
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRLWV 264
+ +H+N V V R G + D NL+L D E+ K S +SK E++ L +
Sbjct: 17 LNKHLNKEVYVKFSGGREVKGVLRGHDAMSNLVLDDTVEYLKDSSDSSKLTG-EKRNLGL 75
Query: 265 L 267
L
Sbjct: 76 L 76
>UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 67
Score = 32.3 bits (70), Expect = 7.7
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 145 GTFKAFDKHMNLILGDCEEF 204
GT +FD++MN++L DCEE+
Sbjct: 5 GTLVSFDEYMNILLNDCEEW 24
>UniRef50_Q8SS46 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN F; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN F - Encephalitozoon cuniculi
Length = 81
Score = 32.3 bits (70), Expect = 7.7
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 55 DKMTIGKNNK--MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
DK +N K +Q+ N VRV L+ + + GT A D + N++L +C E
Sbjct: 6 DKKPARENPKQFLQRMKNRSVRVALKWGQVYEGTLVASDNYFNILLDECTE 56
>UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep:
Sm-like protein - Sulfolobus acidocaldarius
Length = 87
Score = 32.3 bits (70), Expect = 7.7
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK 210
+N V V L++ ++G + D MNL+L DC E+R+
Sbjct: 16 LNKIVLVKLKNGEEYVGRLEQSDGTMNLVLKDCTEYRE 53
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 422,420,471
Number of Sequences: 1657284
Number of extensions: 6558104
Number of successful extensions: 17358
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 17008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17356
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36238783989
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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