Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30513
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 57 2e-09
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 35 0.009
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 34 0.016
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 34 0.016
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 31 0.11
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo... 28 0.80
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 28 1.1
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 26 3.2
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 9.8
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 57.2 bits (132), Expect = 2e-09
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +1
Query: 82 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKN-SKTADREEKRL 258
KM +N+ + V +D RTF+G AFD MNL+L DC+E+R IK +N + EEKR+
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRM 64
Score = 28.3 bits (60), Expect = 0.80
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 231 NCRQRRKKTLGFVLLRGENIVSLTI 305
N K+ LG V+LRGE IVSL++
Sbjct: 56 NSVYEEKRMLGLVILRGEFIVSLSV 80
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 34.7 bits (76), Expect = 0.009
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 109 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRL 258
V V L+ R G A+D+H+N++LGD EE I D+ K +
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTI 71
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 33.9 bits (74), Expect = 0.016
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 106 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
RV+VI D R +G+ K FD NLIL D E
Sbjct: 10 RVQVITNDGRVVLGSLKGFDHTTNLILSDSFE 41
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 33.9 bits (74), Expect = 0.016
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MTI + + I + VI++ R F GT FD ++N++L D E+ + K ++
Sbjct: 3 MTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE 62
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 31.1 bits (67), Expect = 0.11
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
+ ++ + R++ R G K FD+ MNL+L D EE
Sbjct: 28 LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEE 66
>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
Smd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 115
Score = 28.3 bits (60), Expect = 0.80
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +1
Query: 58 KMTIGKNNKMQQHINYRVRVIL--QDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNS 228
+ + G + +QQ + +V++ ++++ + KAFD+H N++L + +E K + +
Sbjct: 24 EFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTA 82
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 231
+QQH + + Q G + FD+ MN++L D + + +KN+K
Sbjct: 20 LQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQ---VDAKNNK 65
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -3
Query: 543 EGHPSWGL-LAFEEEQKVDHDFLVPCVVEMARLLLWQDLEDPEVLRPGQCLYQQHEH 376
+GH SW + F+ + D ++ + V +LLLW D + RP +Y + H
Sbjct: 403 QGHKSWVTDVIFDAWRCDDDNYRIASVGLDRKLLLW-DFSVSAIHRPKSAVYYVNHH 458
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 441 WQDLEDPEVLRPGQ 400
W DLE+P VL+ GQ
Sbjct: 572 WHDLENPIVLKKGQ 585
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,195
Number of Sequences: 5004
Number of extensions: 29705
Number of successful extensions: 83
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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