Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30513
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18)                  106   1e-23
SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   8e-05
SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)                   33   0.16 
SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)                   30   1.4  
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_54435| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  

>SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18)
          Length = 327

 Score =  106 bits (254), Expect = 1e-23
 Identities = 48/67 (71%), Positives = 56/67 (83%)
 Frame = +1

Query: 58  KMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTA 237
           K TIGK++KM  HINYR+R  LQD R FIGTF AFDKHMN+ILGDC+EFRKIK K+SK  
Sbjct: 23  KPTIGKSSKMLLHINYRMRCTLQDGRVFIGTFLAFDKHMNVILGDCDEFRKIKGKSSKAQ 82

Query: 238 DREEKRL 258
           +REEKR+
Sbjct: 83  EREEKRV 89



 Score = 31.1 bits (67), Expect = 0.63
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +3

Query: 240 QRRKKTLGFVLLRGENIVSLTI 305
           +  K+ LG VLLRGE++VS+T+
Sbjct: 84  REEKRVLGLVLLRGEHLVSMTV 105


>SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = +1

Query: 73  KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 204
           +  +++  +N  +RV + D RT IG+F   DK  N+ILG C+EF
Sbjct: 29  QRKELESWLNKLMRVKISDGRTLIGSFLCTDKDRNIILGSCQEF 72


>SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)
          Length = 75

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 97  INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
           ++ R+ V +++ R   G   A+D+H+N+IL D EE
Sbjct: 24  LDERIYVKMRNDRELRGRLHAYDQHLNMILSDVEE 58


>SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)
          Length = 443

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 100 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 231
           N +V +  +++R  +   KAFD+H N++L + +E      K+ K
Sbjct: 29  NTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGK 72


>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 37  YLPNHSDKMTIGKNNKMQQHINY--RVRVILQDSR 135
           ++P H+  M IGK  +M + I +  RVR I+  SR
Sbjct: 334 FIPEHAMGMVIGKKGRMLEEIKHKTRVRPIIDKSR 368


>SB_54435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 197 KNSEKLNLKIVKLQTEKKK 253
           K   KLN+K+ KL+TEKKK
Sbjct: 34  KEVRKLNIKVEKLKTEKKK 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,132,789
Number of Sequences: 59808
Number of extensions: 216670
Number of successful extensions: 438
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)