Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30513
(551 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 112 7e-25
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 112 7e-25
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 112 7e-25
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 112 7e-25
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 112 7e-25
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 112 7e-25
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 112 7e-25
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 112 7e-25
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 112 7e-25
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 112 7e-25
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 112 7e-25
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 111 2e-24
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 109 6e-24
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 109 6e-24
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 109 6e-24
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 109 6e-24
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 109 6e-24
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 109 6e-24
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 109 6e-24
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 109 6e-24
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 109 6e-24
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 107 2e-23
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 102 1e-21
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 102 1e-21
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 94 3e-19
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 94 3e-19
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 77 5e-14
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 39 0.010
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 39 0.010
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 39 0.010
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 39 0.010
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 39 0.010
BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein. 37 0.041
BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein. 37 0.041
BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1... 37 0.041
BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein. 37 0.041
AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate immuno... 37 0.041
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 36 0.12
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 36 0.12
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 36 0.12
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 36 0.12
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 36 0.12
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 33 0.88
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 33 0.88
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 33 0.88
BC012430-1|AAH12430.1| 360|Homo sapiens SEH1-like (S. cerevisia... 31 2.7
AK056940-1|BAB71317.1| 421|Homo sapiens protein ( Homo sapiens ... 31 2.7
AF514996-1|AAM76707.1| 360|Homo sapiens nucleoporin Seh1 protein. 31 2.7
AF431970-1|AAM44214.1| 421|Homo sapiens putative nucleoporin pr... 31 2.7
AF255625-1|AAM21169.1| 360|Homo sapiens putative nucleoporin pr... 31 2.7
AF136976-1|AAG49437.1| 360|Homo sapiens sec13-like protein prot... 31 2.7
U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein. 31 3.6
BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear ribonucle... 31 3.6
BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear ribonucle... 31 3.6
AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein. 31 3.6
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 112 bits (270), Expect = 7e-25
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 112 bits (270), Expect = 7e-25
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 112 bits (270), Expect = 7e-25
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 112 bits (270), Expect = 7e-25
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 112 bits (270), Expect = 7e-25
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 112 bits (270), Expect = 7e-25
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 112 bits (270), Expect = 7e-25
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 112 bits (270), Expect = 7e-25
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 112 bits (270), Expect = 7e-25
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 112 bits (270), Expect = 7e-25
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 33.1 bits (72), Expect = 0.67
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI 305
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 112 bits (270), Expect = 7e-25
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 33.1 bits (72), Expect = 0.67
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI 305
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 111 bits (266), Expect = 2e-24
Identities = 50/66 (75%), Positives = 59/66 (89%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNS+ A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 109 bits (262), Expect = 6e-24
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 109 bits (262), Expect = 6e-24
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 109 bits (262), Expect = 6e-24
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 109 bits (262), Expect = 6e-24
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 109 bits (262), Expect = 6e-24
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 109 bits (262), Expect = 6e-24
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 109 bits (262), Expect = 6e-24
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 109 bits (262), Expect = 6e-24
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 109 bits (262), Expect = 6e-24
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 107 bits (258), Expect = 2e-23
Identities = 49/66 (74%), Positives = 57/66 (86%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPE 60
Query: 241 REEKRL 258
REEKR+
Sbjct: 61 REEKRV 66
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 102 bits (244), Expect = 1e-21
Identities = 47/59 (79%), Positives = 52/59 (88%)
Frame = +1
Query: 82 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRL 258
KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR+
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 59
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 54 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 113
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 114 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 145
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 102 bits (244), Expect = 1e-21
Identities = 47/59 (79%), Positives = 52/59 (88%)
Frame = +1
Query: 82 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRL 258
KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR+
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 59
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 54 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 113
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 114 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 145
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 94.3 bits (224), Expect = 3e-19
Identities = 42/66 (63%), Positives = 54/66 (81%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+EFRK+K KN+K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 241 REEKRL 258
REEKR+
Sbjct: 101 REEKRV 106
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 94.3 bits (224), Expect = 3e-19
Identities = 42/66 (63%), Positives = 54/66 (81%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+EFRK+K KN+K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 241 REEKRL 258
REEKR+
Sbjct: 101 REEKRV 106
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 76.6 bits (180), Expect = 5e-14
Identities = 34/44 (77%), Positives = 38/44 (86%)
Frame = +1
Query: 127 DSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRL 258
D R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +REEKR+
Sbjct: 1 DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRV 44
Score = 36.7 bits (81), Expect = 0.054
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 407
+ K+ LG VLLRGEN+VS+T+
Sbjct: 39 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 98
Query: 408 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 503
RGVGGPSQQ M P RG ++A
Sbjct: 99 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 130
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 39.1 bits (87), Expect = 0.010
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 39.1 bits (87), Expect = 0.010
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 39.1 bits (87), Expect = 0.010
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 39.1 bits (87), Expect = 0.010
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 39.1 bits (87), Expect = 0.010
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 37.1 bits (82), Expect = 0.041
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 82 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK 210
+++ +N +R+ + D RT +G F D+ N+ILG +EF K
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLK 86
>BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 37.1 bits (82), Expect = 0.041
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 82 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK 210
+++ +N +R+ + D RT +G F D+ N+ILG +EF K
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLK 86
>BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1
protein.
Length = 173
Score = 37.1 bits (82), Expect = 0.041
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 82 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK 210
+++ +N +R+ + D RT +G F D+ N+ILG +EF K
Sbjct: 92 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLK 134
>BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 37.1 bits (82), Expect = 0.041
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 82 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK 210
+++ +N +R+ + D RT +G F D+ N+ILG +EF K
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLK 86
>AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate
immuno-associated protein 2 protein.
Length = 125
Score = 37.1 bits (82), Expect = 0.041
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 82 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK 210
+++ +N +R+ + D RT +G F D+ N+ILG +EF K
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLK 86
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.12
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.12
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.12
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.12
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.12
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 32.7 bits (71), Expect = 0.88
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 204
I R+ ++++ + +GT FD +N++L D EF
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF 57
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 32.7 bits (71), Expect = 0.88
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 204
I R+ ++++ + +GT FD +N++L D EF
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF 57
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 32.7 bits (71), Expect = 0.88
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 204
I R+ ++++ + +GT FD +N++L D EF
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF 57
>BC012430-1|AAH12430.1| 360|Homo sapiens SEH1-like (S. cerevisiae)
protein.
Length = 360
Score = 31.1 bits (67), Expect = 2.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 76 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 195
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AK056940-1|BAB71317.1| 421|Homo sapiens protein ( Homo sapiens
cDNA FLJ32378 fis, clone SKMUS1000022, weakly similar to
NUCLEAR PORE PROTEIN SEH1 HOMOLOG. ).
Length = 421
Score = 31.1 bits (67), Expect = 2.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 76 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 195
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF514996-1|AAM76707.1| 360|Homo sapiens nucleoporin Seh1 protein.
Length = 360
Score = 31.1 bits (67), Expect = 2.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 76 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 195
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF431970-1|AAM44214.1| 421|Homo sapiens putative nucleoporin
protein SEH1B protein.
Length = 421
Score = 31.1 bits (67), Expect = 2.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 76 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 195
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF255625-1|AAM21169.1| 360|Homo sapiens putative nucleoporin
protein SEH1A protein.
Length = 360
Score = 31.1 bits (67), Expect = 2.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 76 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 195
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF136976-1|AAG49437.1| 360|Homo sapiens sec13-like protein
protein.
Length = 360
Score = 31.1 bits (67), Expect = 2.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 76 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 195
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein.
Length = 118
Score = 30.7 bits (66), Expect = 3.6
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 100 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 231
N +V + ++++ +G KAFD+H N++L + +E K+ K
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGK 82
>BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 30.7 bits (66), Expect = 3.6
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 100 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 231
N +V + ++++ +G KAFD+H N++L + +E K+ K
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGK 82
>BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 30.7 bits (66), Expect = 3.6
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 100 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 231
N +V + ++++ +G KAFD+H N++L + +E K+ K
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGK 82
>AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein.
Length = 118
Score = 30.7 bits (66), Expect = 3.6
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 100 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 231
N +V + ++++ +G KAFD+H N++L + +E K+ K
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGK 82
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,217,042
Number of Sequences: 237096
Number of extensions: 1080160
Number of successful extensions: 2417
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 2315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2417
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5477474182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -