Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30513
(551 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical pr... 101 3e-22
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 34 0.059
AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical ... 34 0.059
AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 34 0.078
Z78012-3|CAB01413.1| 118|Caenorhabditis elegans Hypothetical pr... 32 0.32
Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 31 0.42
U42436-7|AAO61428.2| 223|Caenorhabditis elegans Hypothetical pr... 31 0.42
AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G ... 27 9.0
AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear... 27 9.0
>Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical
protein W08E3.1 protein.
Length = 160
Score = 101 bits (243), Expect = 3e-22
Identities = 44/66 (66%), Positives = 53/66 (80%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MTI KNNKM H+NYR+++ILQD RTFIG FKAFDKHMN++L +CEE R+IK K K D
Sbjct: 1 MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTD 60
Query: 241 REEKRL 258
EEKR+
Sbjct: 61 GEEKRI 66
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3
Query: 249 KKTLGFVLLRGENIVSLTI 305
K+ LG VL+RGE+IVS+T+
Sbjct: 64 KRILGLVLVRGEHIVSMTV 82
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 34.3 bits (75), Expect = 0.059
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRLWV 264
+ + ++ +RV Q R G + FD+ +N++L DC E+ + S D E ++L +
Sbjct: 16 LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGD-ETRQLGL 74
Query: 265 L 267
+
Sbjct: 75 I 75
>AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical
protein Y62E10A.12 protein.
Length = 102
Score = 34.3 bits (75), Expect = 0.059
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRLWVL 267
++ RV V +++ R G +AFD+H+N++L + EE R++ + ++ KR+ +
Sbjct: 25 LDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTFEEIYKQTKRVVPM 84
Query: 268 FF 273
F
Sbjct: 85 LF 86
>AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like
protein protein 8 protein.
Length = 98
Score = 33.9 bits (74), Expect = 0.078
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
+ ++N V V+ D R +G K FD+ +NL++ D E
Sbjct: 5 LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHE 43
>Z78012-3|CAB01413.1| 118|Caenorhabditis elegans Hypothetical
protein C52E4.3 protein.
Length = 118
Score = 31.9 bits (69), Expect = 0.32
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +1
Query: 100 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
N++V + ++++ +G KAFD+H N++L + +E
Sbjct: 39 NHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 72
>Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical
protein F28F8.3 protein.
Length = 91
Score = 31.5 bits (68), Expect = 0.42
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 204
I ++ VI+++ + +GT FD ++N++L D E+
Sbjct: 22 IGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEY 57
>U42436-7|AAO61428.2| 223|Caenorhabditis elegans Hypothetical
protein C49H3.4 protein.
Length = 223
Score = 31.5 bits (68), Expect = 0.42
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 88 QQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
Q+ I RVR ++ R F G FD+H NL++ D E
Sbjct: 120 QKRIEVRVRSAIRIDRIFEGIPTTFDEHFNLMMKDVTE 157
>AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G
protein.
Length = 77
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/43 (20%), Positives = 26/43 (60%)
Frame = +1
Query: 82 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK 210
+++++++ + + L +R G + FD MN+++ + E++K
Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQK 50
>AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 7 protein.
Length = 77
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/43 (20%), Positives = 26/43 (60%)
Frame = +1
Query: 82 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK 210
+++++++ + + L +R G + FD MN+++ + E++K
Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQK 50
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,911,757
Number of Sequences: 27780
Number of extensions: 163325
Number of successful extensions: 543
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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