Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30513
(551 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 83 9e-17
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 82 3e-16
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 82 3e-16
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 38 0.006
At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putati... 37 0.008
At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related... 36 0.018
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 33 0.13
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 33 0.13
At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2, put... 32 0.29
At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2, put... 32 0.29
At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2, put... 32 0.29
At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2, put... 32 0.29
At1g77770.2 68414.m09056 expressed protein 31 0.39
At1g77770.1 68414.m09055 expressed protein 31 0.39
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 31 0.51
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 30 0.89
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 29 1.6
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 29 2.7
At1g68140.1 68414.m07783 expressed protein 29 2.7
At1g56540.1 68414.m06502 disease resistance protein (TIR-NBS-LRR... 28 3.6
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 83.4 bits (197), Expect = 9e-17
Identities = 38/68 (55%), Positives = 49/68 (72%), Gaps = 3/68 (4%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKI---KSKNSK 231
M++ K++KM Q INYR+RV +QD R IG F AFD+HMNL+LGDCEEFRK+ K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 232 TADREEKR 255
+REE+R
Sbjct: 61 NEEREERR 68
Score = 32.3 bits (70), Expect = 0.22
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 231 NCRQRRKKTLGFVLLRGENIVSLTI 305
N + ++TLG VLLRGE ++S+T+
Sbjct: 61 NEEREERRTLGLVLLRGEEVISMTV 85
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 81.8 bits (193), Expect = 3e-16
Identities = 36/67 (53%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK--T 234
M++ K++KM Q INYR+RV +QD R +G F AFD+HMNL+LGDCEEFRK+ K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 235 ADREEKR 255
+RE++R
Sbjct: 61 EEREDRR 67
Score = 31.5 bits (68), Expect = 0.39
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 231 NCRQRRKKTLGFVLLRGENIVSLTI 305
N + ++TLG VLLRGE ++S+T+
Sbjct: 60 NEEREDRRTLGLVLLRGEEVISMTV 84
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 81.8 bits (193), Expect = 3e-16
Identities = 36/67 (53%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK--T 234
M++ K++KM Q INYR+RV +QD R +G F AFD+HMNL+LGDCEEFRK+ K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 235 ADREEKR 255
+RE++R
Sbjct: 61 EEREDRR 67
Score = 31.5 bits (68), Expect = 0.39
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 231 NCRQRRKKTLGFVLLRGENIVSLTI 305
N + ++TLG VLLRGE ++S+T+
Sbjct: 60 NEEREDRRTLGLVLLRGEEVISMTV 84
>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 97
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
I R+ V L+ R G AFD+H+N+ILGD EE
Sbjct: 20 IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEE 54
>At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 98
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ R+ V L+ R G AFD+H+N+ILGD EE
Sbjct: 20 LDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEE 54
>At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related /
snRNP-related contains similarity to snRNP-associated
polypeptide N [Rattus norvegicus] GP|206694|gb|AAA42059
Length = 112
Score = 35.9 bits (79), Expect = 0.018
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 79 NKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKI-KSKNSKTADR 243
+++++ + ++ V ++D R F+G F DK N+IL D E+R I +S S T R
Sbjct: 25 SRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSSPSPTEQR 80
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 76 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL-GDCE 198
+ + +++ ++ V+L+D R +GT ++FD+ N +L G CE
Sbjct: 12 STSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACE 53
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 76 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL-GDCE 198
+ + +++ ++ V+L+D R +GT ++FD+ N +L G CE
Sbjct: 12 STSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACE 53
>At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 31.9 bits (69), Expect = 0.29
Identities = 16/53 (30%), Positives = 32/53 (60%)
Frame = +1
Query: 100 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRL 258
N +V + +++R +G +AFD+H N++L E R++ ++ KT ++K L
Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVL---ENVREMWTEVPKTGKGKKKAL 82
>At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 31.9 bits (69), Expect = 0.29
Identities = 16/53 (30%), Positives = 32/53 (60%)
Frame = +1
Query: 100 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRL 258
N +V + +++R +G +AFD+H N++L E R++ ++ KT ++K L
Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVL---ENVREMWTEVPKTGKGKKKAL 82
>At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 31.9 bits (69), Expect = 0.29
Identities = 16/53 (30%), Positives = 32/53 (60%)
Frame = +1
Query: 100 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRL 258
N +V + +++R +G +AFD+H N++L E R++ ++ KT ++K L
Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVL---ENVREMWTEVPKTGKGKKKAL 82
>At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 109
Score = 31.9 bits (69), Expect = 0.29
Identities = 16/53 (30%), Positives = 32/53 (60%)
Frame = +1
Query: 100 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRL 258
N +V + +++R +G +AFD+H N++L E R++ ++ KT ++K L
Sbjct: 34 NTQVLINCRNNRKLLGRVRAFDRHCNMVL---ENVREMWTEVPKTGKGKKKAL 83
>At1g77770.2 68414.m09056 expressed protein
Length = 264
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 64 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHM 174
T+ K+ +M H N + R +QD+ +F+G F+ KHM
Sbjct: 98 TVVKDARM--HFNSKRRTCMQDNCSFLGNFRKLKKHM 132
>At1g77770.1 68414.m09055 expressed protein
Length = 265
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 64 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHM 174
T+ K+ +M H N + R +QD+ +F+G F+ KHM
Sbjct: 98 TVVKDARM--HFNSKRRTCMQDNCSFLGNFRKLKKHM 132
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 31.1 bits (67), Expect = 0.51
Identities = 11/44 (25%), Positives = 29/44 (65%)
Frame = +1
Query: 70 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
G+ ++++++ ++++ L +R +GT + FD+ MNL++ + E
Sbjct: 5 GQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE 48
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 30.3 bits (65), Expect = 0.89
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 109 VRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
+ VI D R +G K FD+ N+IL + E
Sbjct: 15 ISVITNDGRNIVGVLKGFDQATNIILDESHE 45
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/44 (25%), Positives = 28/44 (63%)
Frame = +1
Query: 70 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
G+ ++++++ ++++ L +R GT + FD+ MNL++ + E
Sbjct: 5 GQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE 48
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR 243
+Q ++ + Q G FD++MNL+L + EE IK K K R
Sbjct: 21 LQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV-SIKKKTRKPLGR 72
>At1g68140.1 68414.m07783 expressed protein
Length = 334
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNL 180
+N + R+ +Q++ + GTFK KHM +
Sbjct: 140 LNLKKRICMQENCVYAGTFKELRKHMKV 167
>At1g56540.1 68414.m06502 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1096
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/81 (18%), Positives = 32/81 (39%)
Frame = +1
Query: 94 HINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRLWVLFF 273
H+ V SR + F + KH +++ + +N+ +E LW +
Sbjct: 945 HMVNPVSFFYPSSREIVLEFSSIHKHFDIVECGVQILTDETERNNNVGSADEDDLWYIHE 1004
Query: 274 YVEKI*FH*QSKDHLHQKKDC 336
+ E + + KD + + + C
Sbjct: 1005 FSESLRKEEKDKDSVAKSESC 1025
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,305,095
Number of Sequences: 28952
Number of extensions: 148693
Number of successful extensions: 409
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -