Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30511
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 31 0.22
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 30 0.38
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 29 0.51
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 29 0.67
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 27 2.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.1
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 27 2.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual 26 4.7
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 26 6.3
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su... 26 6.3
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.3
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 26 6.3
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch... 26 6.3
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 8.3
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 30.7 bits (66), Expect = 0.22
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -1
Query: 472 HHSMATSSRTKISNGELGSIISNRRANGSPTSAEAIVSSPLLSVILIATLG 320
H S + S+ + E G+ ++NRR+ P S +S+P +++ LI +G
Sbjct: 315 HKSESHSALNNLHKSESGTSLNNRRSKVGPGSCFFCLSNPNVALHLIVAIG 365
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 29.9 bits (64), Expect = 0.38
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Frame = +1
Query: 394 WLSDLKLWIPTHHSRSSCENLL------PWNGVDSSEIT----LIDSNVALQNILSWGPL 543
W+S K I T H+ S ++ P+ + S E+ L++ N + L W PL
Sbjct: 541 WISVAKRLISTSHNMSIVRSITFIYAVWPYLDIKSKELVTLQWLLEENTFQELFLHWSPL 600
Query: 544 IQVHFKR 564
++ +F+R
Sbjct: 601 VRAYFQR 607
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 29.5 bits (63), Expect = 0.51
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -1
Query: 400 RANGSPTSAEAIVSSPLLSVILIATLGESTITSS 299
R+NGS ++E+ ++SP SV + +LG S T S
Sbjct: 291 RSNGSSPTSESALNSPASSVSSLPSLGASQTTDS 324
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 29.1 bits (62), Expect = 0.67
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 478 SQHHSMATSSRTKISNGELGSIISNRRANGSPTSAEAIVSSPLLSV 341
+Q S++ + +S GELG +I NR+ PT + I PLL++
Sbjct: 950 NQCGSLSLEELSDMSTGELGDLIHNRKM--GPTVKKFISKLPLLNI 993
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 348 RSGDDTIASAEVGDPLALRFEIMDPNSPFEIFVRELVAMEW 470
+SG+ SA+ P L I D S +EIF + V EW
Sbjct: 216 QSGNMANGSADAVKPAVLYPPIQDLTSSYEIFQKRRVIEEW 256
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.1
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -1
Query: 466 SMATSSRTKISNGELGSIISNRRANGS-PTSAEAIVSSPLLSVILIATLGESTITSS 299
S ++SS T S+ SIIS+ ++ S PTS + +SS S T STI+SS
Sbjct: 255 SSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSS-PTSTSSTISSS 310
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -3
Query: 389 ISNFSGSNSIVTTPVCDSHRYVG*VYNNFLGQTSLNVSV--NSKIDFLATVLF 237
++ S +++IVT VCD + V +NFL +++ ++D+L +V F
Sbjct: 581 LAKLSFTSTIVTMSVCDEYSLVVYTADNFLHHIRFDINELGRLELDYLTSVNF 633
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -1
Query: 466 SMATSSRTKISNGELGSIISNRRANGSPTSAEAIVSS 356
S +S T G L S I+ GSPTS+ VSS
Sbjct: 1064 SSTSSVATASITGSLSSSIATASVTGSPTSSVTAVSS 1100
>SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 410 NYGSQLTIRDLRARTCCHGMVLTPAKSRL 496
N+ S IRDL +T CH +V + S+L
Sbjct: 69 NHESLFVIRDLGVQTNCHSIVPWKSSSKL 97
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 270 IHGDIQTGLSEEVIVDSPNVAMRITD 347
I G+I+ L +IVDS ++AM I D
Sbjct: 107 ITGNIEDDLEYHLIVDSNSIAMEIDD 132
>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 118 CNVKQNGLGRYLNDVVIQHHDTIVTSSDLGL 210
C+++ RY + V+ +HD++V SS +GL
Sbjct: 65 CDIES--FARYASQVIPFYHDSLVPSSRMGL 93
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 226 YDLTNKTVAKKSILEFTETFKLVCPRKLL 312
Y+ N KK +FT + K V P KL+
Sbjct: 334 YETINVEETKKETYKFTRSIKTVIPNKLI 362
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 621 TTSDEGNLKAVENVIAASFPLKVDLN 544
T + + NL+ EN + + +P K DLN
Sbjct: 19 TFASDNNLRRKENFLKSRYPSKFDLN 44
>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 484 RWSQHHSMATSSRTKISNGELGSIISNRRANGSPTSAEAIVSS 356
RW+ HS +SS + S S+ +G+ SAE +SS
Sbjct: 89 RWANRHSNVSSSSGSRGRSSVSSRDSSPSYSGALRSAERSISS 131
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -2
Query: 615 SDEGNLKAVENVIAASFPLKVDLNKW 538
+D G VENVI P+ D W
Sbjct: 411 ADRGETNLVENVIVMGAPMPTDAKLW 436
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,397
Number of Sequences: 5004
Number of extensions: 65717
Number of successful extensions: 205
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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