Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30511
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0295 + 2279185-2279368,2279499-2279849,2279960-2280122,228...    32   0.53 
01_03_0013 + 11645786-11645853,11646674-11646802,11646906-116469...    30   1.6  
02_01_0039 - 271926-273503                                             29   2.8  
09_04_0098 - 14580949-14581176,14581213-14581470                       29   3.7  
07_03_0369 - 17356806-17356934,17357145-17357278,17357989-173582...    28   6.5  
04_04_0765 - 27910189-27912393,27912521-27912598                       28   6.5  
10_08_0827 + 20849312-20849833,20850352-20850417,20850786-208510...    28   8.6  

>03_01_0295 +
           2279185-2279368,2279499-2279849,2279960-2280122,
           2280141-2280177,2280747-2281367
          Length = 451

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 49  NSCVVDVKQSLEFELHMGYNNIECNVKQ 132
           N CV + +   EFEL++G N+ EC ++Q
Sbjct: 390 NICVFEGEDEAEFELYLGQNDEECTLEQ 417


>01_03_0013 +
           11645786-11645853,11646674-11646802,11646906-11646945,
           11647075-11647191
          Length = 117

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 719 MDITERKFIRT-AHSHCTGSASRHTRSHPRHGIAQLLTKGI*RP 591
           + + ER  +   A  H  G ASR+  S  R G+A L+ KG+ +P
Sbjct: 38  LKVEERSVVEQGAEGHFGGEASRYPFSRWRLGLAALILKGVSKP 81


>02_01_0039 - 271926-273503
          Length = 525

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
 Frame = -3

Query: 467 FHGNKFSHEDLEW*VGIHNFKSESQWISNFSGSNSIVTTPVCD---SHRYVG*VYNNFLG 297
           F G +   ++  W    H      QW   FS  N +V   V +   + R+   + NN LG
Sbjct: 76  FQGQRTPEDEKVWLASYHMTGEAQQWYIQFSKDNGLVNWSVFEHFVNMRFGPPIRNNILG 135

Query: 296 QTS 288
           + S
Sbjct: 136 ELS 138


>09_04_0098 - 14580949-14581176,14581213-14581470
          Length = 161

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 297 SEEVIVDSPNVAMRITDRSGDDTIASAEVGDPLA 398
           SEE  +     A R+ DR+GD  I + E+G  LA
Sbjct: 86  SEEATLGEAAAAFRVFDRNGDGFIDAGELGSVLA 119


>07_03_0369 -
           17356806-17356934,17357145-17357278,17357989-17358247,
           17358322-17358410,17358644-17358794,17358889-17359032,
           17359358-17359477,17359595-17359769,17359842-17360215
          Length = 524

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 112 IECNVKQNGLGRYLNDVVIQHHDTIVTSSDLGLAVTCQYDLTNKTV 249
           I  N+K   +G  L D  IQ+      S D+GL    Q++  NK V
Sbjct: 266 IHINLKGFAIGNGLTDPAIQYKAYTDYSLDMGLITKSQFNRINKIV 311


>04_04_0765 - 27910189-27912393,27912521-27912598
          Length = 760

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = -1

Query: 472 HHSMATSSRTKISNGELGSIISNRRANGSPTSAEAIVSSPL 350
           H + A +S + +++   G +++   A GSP +A+A+ +SP+
Sbjct: 332 HAAHAATSFSPLADDGRGLLLALPDATGSPAAADAVTASPV 372


>10_08_0827 +
           20849312-20849833,20850352-20850417,20850786-20851082,
           20851215-20851412,20851748-20851849,20851960-20852100,
           20852171-20852278,20852588-20852670,20852829-20852991,
           20853636-20853650,20853968-20854093
          Length = 606

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 93  QFKLKTLFDIYDARVWTSFSIDFAVKQFGCL 1
           +F   + F I +  +WT FS  + +K+F C+
Sbjct: 158 EFLFGSGFAIAEGALWTPFSFSYVLKKFPCI 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,994,999
Number of Sequences: 37544
Number of extensions: 418054
Number of successful extensions: 1007
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)