Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30511
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)                 30   1.7  
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)                   30   1.7  
SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_38931| Best HMM Match : TP2 (HMM E-Value=6.7)                       28   8.8  

>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
          Length = 714

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 264 LGIHGDIQTGLSEEVIVDSPNVAMRITDRSGDDT 365
           +G+H  +Q+  + +VI  SPNV + + D   D T
Sbjct: 551 IGVHDVVQSLANAQVIASSPNVTVLVKDEPADAT 584


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 466 SMATSSRTKISNGELGSIISNRRANGSPTSAEAIVSSPLLS--VILIATLGESTITSSD 296
           S+ +S+ +KI   E   I SN+R    PT  E++V+ P+ +   +   T  ES +T  +
Sbjct: 260 SLTSSNDSKIHPSENDVITSNKRTVIKPTPTESVVTKPIPAEGAVTKQTSTESAVTQPE 318


>SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
          Length = 407

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 466 SMATSSRTKISNGELGSIISNRRANGSPTSAEAIVSSPLLS--VILIATLGESTITSSD 296
           S+ +S+ +KI   E   I SN+R    PT  E++V+ P+ +   +   T  ES +T  +
Sbjct: 12  SLTSSNDSKIHPSENDVITSNKRTVIKPTPTESVVTKPIPAEGAVTKQTSTESAVTQPE 70


>SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 140 SPFCLTLHSILL*PMCSSNSRLCLTSTTQEFGLP 39
           +P CLT    L  P C+S+S+L   S  Q  G+P
Sbjct: 188 NPICLTHMHTLTTPSCTSHSKLTALSVRQRPGVP 221


>SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 521 TFYHGGHLFKSTLSGKDAAITFSTAFKFPSSEVVQFRALGDSLY 652
           T  H G+  K  + G D+ +TF    +      V F  LG  LY
Sbjct: 16  TDVHLGYAEKDQVRGNDSFVTFEETLQIAKKRNVDFILLGGDLY 59


>SB_38931| Best HMM Match : TP2 (HMM E-Value=6.7)
          Length = 251

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +1

Query: 19  DGKIYAKGSPNSCVVDVKQSLEFELHMGYNN 111
           D  +Y++G P+  +V+ + SLE+   +GY++
Sbjct: 67  DFPVYSEGRPHEQLVEDEDSLEYSQKLGYSD 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,767,396
Number of Sequences: 59808
Number of extensions: 511135
Number of successful extensions: 1250
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)