Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30511
(724 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 31 0.77
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 31 0.77
At5g44250.1 68418.m05413 expressed protein contains Pfam PF05705... 30 1.4
At1g51600.2 68414.m05811 zinc finger (GATA type) family protein ... 30 1.4
At1g51600.1 68414.m05810 zinc finger (GATA type) family protein ... 30 1.4
At5g46380.1 68418.m05708 hypothetical protein 30 1.8
At5g52230.1 68418.m06483 expressed protein 29 3.1
At1g71110.1 68414.m08206 expressed protein 29 3.1
At5g62900.1 68418.m07893 expressed protein 29 4.1
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ... 28 5.5
At4g15393.1 68417.m02352 cytochrome P450 family protein similar ... 28 7.2
At3g12150.1 68416.m01514 expressed protein 28 7.2
At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger) fa... 27 9.5
At3g23950.1 68416.m03008 F-box family protein contains Pfam:PF00... 27 9.5
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 31.1 bits (67), Expect = 0.77
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 318 SPNVAMRITDRSGDDTIASAEVGDPLALRFEIMDPNSPFEIFVRELVAMEWC 473
+PNV +I S DD+ + ++ D +R IM P F R ++AMEWC
Sbjct: 225 NPNVTTQIMVASDDDSSPTLKLWD---MR-NIMSPVREFTGHQRGVIAMEWC 272
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 31.1 bits (67), Expect = 0.77
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 318 SPNVAMRITDRSGDDTIASAEVGDPLALRFEIMDPNSPFEIFVRELVAMEWC 473
+PNV +I S DD+ + ++ D +R IM P F R ++AMEWC
Sbjct: 225 NPNVTTQIMVASDDDSSPTLKLWD---MR-NIMSPVREFTGHQRGVIAMEWC 272
>At5g44250.1 68418.m05413 expressed protein contains Pfam PF05705:
Eukaryotic protein of unknown function (DUF829)
Length = 403
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 40 GSPNSCVVDVKQSLEFELHMGYNNIECNVKQNGLGRYLND 159
G PN+C+ V Q LE G N +C + +N + ++ D
Sbjct: 96 GGPNACMYKVLQILEGTCETGLNPDDCRLVRNCISGFIYD 135
>At1g51600.2 68414.m05811 zinc finger (GATA type) family protein
contains similarity to zinc-finger protein ZIM
[Arabidopsis thaliana] gi|8918533|dbj|BAA97679; contains
Pfam PF00320: GATA zinc finger
Length = 302
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 291 GLSEEVIVDSPNVAMRITDRSGDDTIASAEVGDPLALRFE 410
G+SE V D P+ +TD G+ +E GD L L F+
Sbjct: 50 GMSEGVETDIPSHPGNVTDNRGEVVDRGSEQGDQLTLSFQ 89
>At1g51600.1 68414.m05810 zinc finger (GATA type) family protein
contains similarity to zinc-finger protein ZIM
[Arabidopsis thaliana] gi|8918533|dbj|BAA97679; contains
Pfam PF00320: GATA zinc finger
Length = 302
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 291 GLSEEVIVDSPNVAMRITDRSGDDTIASAEVGDPLALRFE 410
G+SE V D P+ +TD G+ +E GD L L F+
Sbjct: 50 GMSEGVETDIPSHPGNVTDNRGEVVDRGSEQGDQLTLSFQ 89
>At5g46380.1 68418.m05708 hypothetical protein
Length = 607
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 448 RTKISNGELGSIISNRRANGSPTSAE-AIVSSPLLSVILIATLGESTITSSDRPV*MSP 275
R ++ L S ISN PTS+E A+ S + S L+ LG T SS V +P
Sbjct: 112 RNHLAGSSLNSAISNVETKRVPTSSEEAVPSLSVPSSTLVTALGCGTSASSKDSVTKAP 170
>At5g52230.1 68418.m06483 expressed protein
Length = 746
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 181 TIVTSSDLGLAVTCQYDLTNKTVAKKSILEFTETF 285
T T G C Y +TNKTV K L FT++F
Sbjct: 710 TAATQEAKGRQNNCDY-MTNKTVGKPDDLRFTQSF 743
>At1g71110.1 68414.m08206 expressed protein
Length = 513
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/63 (23%), Positives = 34/63 (53%)
Frame = +1
Query: 343 QTGVVTILLLPLKLEIHWLSDLKLWIPTHHSRSSCENLLPWNGVDSSEITLIDSNVALQN 522
++ ++T+ + L L LS +K W+ H+ ++ ++LP ++ TL S V + +
Sbjct: 255 RSALITVATVMLILSFVGLS-MKEWVDNPHAETALSSILPCVDQQTTNQTLSQSKVVINS 313
Query: 523 ILS 531
I++
Sbjct: 314 IVT 316
>At5g62900.1 68418.m07893 expressed protein
Length = 161
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 692 RTAHSHCTGSASRHTRSHPRHGIAQLLTKGI 600
++ +CT +AS +SHP H +A LL+ +
Sbjct: 20 KSVRFYCTVNASEVIKSHPGHHVALLLSSAV 50
>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
(Swiss-Prot:Q9H583) [Homo sapiens]
Length = 1830
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 391 HWLSDLKLWIPTHHSRSS--CENLLPWNGVDSSEITLIDSNVALQNIL 528
H D KLW HH R++ C L NGV + + ++ V +Q+ +
Sbjct: 435 HPFVDSKLWFRLHHPRAAVRCAALSSLNGVLKDDSSKAENLVTIQDAI 482
>At4g15393.1 68417.m02352 cytochrome P450 family protein similar to
Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066)
[Arabidopsis thaliana]; contains Pfam PF00067:
Cytochrome P450
Length = 399
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 341 DSHRYVG*VYNNFLGQTSLNVSVNSKIDFLA 249
D+H++ + N FLG +L + + IDFLA
Sbjct: 123 DTHKHARSLTNQFLGSQALKLRMIQDIDFLA 153
>At3g12150.1 68416.m01514 expressed protein
Length = 363
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 603 NLKAVENVIAASFPLKVDLNKWPP 532
NL+ +E ++ FPL+V WPP
Sbjct: 42 NLELLERMVQRLFPLEVQGQNWPP 65
>At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 272
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 276 GDIQTGLSEEVIVDSPNVAMRITDRSGDDT 365
GD +TGLSEEVI D + + RS D+T
Sbjct: 196 GDERTGLSEEVI-DENLIRRKYEKRSDDET 224
>At3g23950.1 68416.m03008 F-box family protein contains Pfam:PF00646
F-box domain
Length = 418
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 386 RSIGSPI*NYGSQLTIRDLRARTCCHGMVLTPAKSRLSTAMLPYRTFYHGGHLFK 550
RS GS + ++ ++ TIR L+ C G+VL +S + T M +Y G LF+
Sbjct: 80 RSPGSLV-SFFAETTIRKLQVLACTDGLVLLYVESCVGTPM-----YYVGNPLFQ 128
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,354,608
Number of Sequences: 28952
Number of extensions: 346155
Number of successful extensions: 921
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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