Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30510
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces pombe...    75   1e-14
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    28   1.6  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   3.7  
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   3.7  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    26   6.4  
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    25   8.5  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   8.5  

>SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 193

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 33/63 (52%), Positives = 45/63 (71%)
 Frame = +3

Query: 285 LLIKKLWDVALGPLKQVPMNLFIMYMAGNSISIFPIMMVGMLIVRPVKALFATQSTFKMV 464
           LL+KK W++A  PLKQ+PMN  + YM+GNS+ IF IM   ML+V P+KA+ +T S F   
Sbjct: 70  LLLKKAWELAYSPLKQIPMNAILAYMSGNSLQIFSIMTTLMLLVNPLKAITSTGSAFTPF 129

Query: 465 EGT 473
           +GT
Sbjct: 130 KGT 132



 Score = 29.1 bits (62), Expect = 0.69
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 527 LALYKCQSMGLLPTHSSD--GWHLKSLQQDSEH 619
           + +YK Q MGLLPT +SD   W +  +  D  +
Sbjct: 154 IGVYKLQRMGLLPTTTSDWLAWEVSKVFMDRSY 186


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 133 SQLKSNKKLKWALDFNQKNKQLSTE 207
           SQ   N+++KW  DFN K K L  E
Sbjct: 620 SQAALNRRVKWENDFNNKIKALREE 644


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 178 NQKNKQLSTELPSPPGYSQSSNANYANHQKIRTQIYSSL 294
           + KN++   +    P    +S++NYA+H+   +Q  S+L
Sbjct: 101 SSKNQETDAKSEQAPFTEDASSSNYAHHRSADSQTKSAL 139


>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 289

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = -2

Query: 617 VPSLVGGSSNA----THHWSELVTIPYS-DTYRVLKECLLYSDTINNFLSDSLCTFNHFE 453
           + SL+  SSN      HH S +  I +    Y  L+  LL  + +NN +++ L  ++H  
Sbjct: 128 ISSLLTSSSNQRFNDNHHKSIVKRIRHEIKCYNSLQLVLLLDECLNNIMNEKLYAYDHDH 187

Query: 452 S 450
           S
Sbjct: 188 S 188


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 226 YSQSSNANYANHQKIRTQIYSSLKNYGMWHWAL*NKY 336
           Y +  N    N QK+   I++S  N  +  W + NKY
Sbjct: 117 YEKEKNHASHNAQKLDVWIFNSWTNSELSRWLIKNKY 153


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 355 IIKRFM--GTCFKGPNATSHSFLMRSKFESESFDDSHN 248
           +IK FM  G  F   N T    +   KFE E+F+  H+
Sbjct: 59  VIKNFMLQGGDFTRGNGTGGESIYGEKFEDENFELKHD 96


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 548 SDTYRVLKECLLYSDTINNFLSDSLCTFNHFESTLCSKQR 429
           S +  + K   +Y D +N+F+S ++ TF      LC + +
Sbjct: 233 SSSKNIQKIIKVYVDMLNSFISPNVTTFETVIFALCRRAK 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,206,231
Number of Sequences: 5004
Number of extensions: 71085
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)