Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30510
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0022 - 13834090-13834128,13835217-13835282,13835364-138354...    42   7e-04
07_03_1521 + 27419859-27420106,27422050-27423363,27423885-274243...    28   8.9  
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    28   8.9  
02_02_0061 + 6468190-6471046,6471318-6471736                           28   8.9  

>03_03_0022 -
           13834090-13834128,13835217-13835282,13835364-13835461,
           13836340-13836493,13836742-13836798,13836906-13837028
          Length = 178

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 21/65 (32%), Positives = 38/65 (58%)
 Frame = +3

Query: 264 KDSDSNLLLIKKLWDVALGPLKQVPMNLFIMYMAGNSISIFPIMMVGMLIVRPVKALFAT 443
           KDS++     +K W+VA  P K + M  F+M+MAG+++ +F I +    + +P+ AL + 
Sbjct: 51  KDSET-AWKAQKAWEVAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALRSV 109

Query: 444 QSTFK 458
              F+
Sbjct: 110 GKVFE 114



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +2

Query: 509 NIVNILLALYKCQSMGLLPTHSSDGWHLKSLQQDSEHIGRGV 634
           N+  + L ++K  ++GLLPT++SD     +  ++ E+ G G+
Sbjct: 134 NLAAMGLGVWKLNTLGLLPTNASDWVFSLAPAREVEYAGGGI 175


>07_03_1521 +
           27419859-27420106,27422050-27423363,27423885-27424308,
           27424540-27424968,27425228-27425305,27426581-27426839,
           27428542-27428552
          Length = 920

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 121 IVTMSQLKSNKKLKWALDFNQKNKQLSTELPSPPGYSQS 237
           I+ +S   SN+KL   +  +  NK LST +P  PG   S
Sbjct: 822 IIDLSSQISNEKLGEDVSIHTINKFLSTSMPRRPGAGAS 860


>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
            30286718-30287042,30287563-30287818,30287901-30288117,
            30288743-30289095,30289330-30289833,30291267-30292467,
            30292614-30292970,30293258-30293495,30294083-30295125,
            30295234-30296649,30296731-30296855,30297036-30297314,
            30297352-30297382,30298957-30299022,30299447-30299689,
            30299848-30299898,30299980-30300071,30300182-30300249,
            30300515-30300600,30300720-30300824,30300994-30301127,
            30302403-30302436,30302620-30302892,30303019-30303288,
            30303384-30303974,30304065-30304214
          Length = 3376

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 569  ELVTIPYSDTYRVLKECLLYSDTINNFLSDSLCTF 465
            ELV + + D       C+L S T  N LSDS+C++
Sbjct: 2110 ELVFLVWRDETPKSLLCILDSATTYNLLSDSICSY 2144


>02_02_0061 + 6468190-6471046,6471318-6471736
          Length = 1091

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
 Frame = +2

Query: 485  TKNCLLYRNIVNILLALYKCQSMG---------LLPTHSSDGWHLKSLQQDSEHIGRGVI 637
            T  C+ +RN+V +L         G          LP  + D W  +++ +D EH    +I
Sbjct: 818  TLRCVRHRNLVKVLTVCSSIDFQGRDFKAIVYKFLPNRNLDQWLHQNIMEDGEHKALDLI 877

Query: 638  TYMD 649
            T ++
Sbjct: 878  TRLE 881


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,457,573
Number of Sequences: 37544
Number of extensions: 416729
Number of successful extensions: 863
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)