Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30510
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                29   3.0  
SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)                29   3.9  
SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_49100| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               28   9.1  
SB_25392| Best HMM Match : PHD (HMM E-Value=0.0062)                    28   9.1  
SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)              28   9.1  

>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1169

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -2

Query: 614 PSLVGGSSNATHHWSELVTIP--YSDTYRVLKECLLYSDTINNFLSDSLCTFNHFESTLC 441
           P+   G++ +   W+E  T P  YS      KE   +SD+   +    L T++H  +T C
Sbjct: 135 PAACSGATYSEAMWTECKTCPAGYSCPGNARKELCPFSDSTGYYYRTDLRTYSHPRATEC 194


>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 854

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +2

Query: 503 YRNIVNILLALYKCQSMGLLPT--HSSDGWHLKSL 601
           Y  + N+  A+ K +S GL+ T  HS++GW +KS+
Sbjct: 280 YTALTNMPEAINKTRSDGLIETRYHSNEGWFMKSV 314


>SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)
          Length = 581

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 464 NHFESTLCSKQRLHRPHY*HANHHYWKYRDRV 369
           +H+   LC  +R H  H+ H +HH+  Y D V
Sbjct: 231 HHYHHHLCHDRR-HHYHHVHYDHHHHHYHDIV 261


>SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 431 AVCYTKYFQNG*RYTSYRTKNCLLYRNIVNILLAL 535
           A+CY+  FQN  RY  +   + ++  NI+ I++ +
Sbjct: 185 AICYSVSFQNSNRYHHHHHHHIIIIINIIIIIIII 219


>SB_49100| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 313

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +1

Query: 115 TWIVTMSQLKSNKKLKWALDFNQKNKQLSTELPSPPGYSQSSNANYANHQKIRTQIYSSL 294
           T+ V     ++  +LK  +DF+  ++       SP GY+ +  +NY  H K  T   ++L
Sbjct: 182 TYNVAKFLYENRHRLKGYIDFHAYSQMFL----SPWGYTDAKPSNYTEHMKAMTAAVNAL 237

Query: 295 K 297
           +
Sbjct: 238 Q 238


>SB_25392| Best HMM Match : PHD (HMM E-Value=0.0062)
          Length = 485

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 181 QKNKQLSTELPSPPGY-SQSSNANYANHQKIRTQI 282
           ++ ++LS   P   G+ +++S ANY+  Q++RT +
Sbjct: 124 REQRRLSPSTPQDNGHQAETSEANYSTRQRVRTTL 158


>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
          Length = 479

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 551 MGLLPTHSSDGWHLKSLQQDSEHIGRGVITYMDFNF 658
           MG LP H    +HL +LQ  S    + V+ ++D NF
Sbjct: 5   MGTLPPHRD--YHLPTLQASSPPTTKEVVLWVDSNF 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,841,684
Number of Sequences: 59808
Number of extensions: 487797
Number of successful extensions: 1151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)