Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30510
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006833-2|AAF60946.1|  174|Caenorhabditis elegans Hypothetical ...    98   7e-21
AL031627-17|CAA20950.2|  344|Caenorhabditis elegans Hypothetical...    28   6.0  
AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z82282-3|CAB05275.1|  638|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AC006833-2|AAF60946.1|  174|Caenorhabditis elegans Hypothetical
           protein ZK616.6 protein.
          Length = 174

 Score = 97.9 bits (233), Expect = 7e-21
 Identities = 46/90 (51%), Positives = 66/90 (73%), Gaps = 5/90 (5%)
 Frame = +3

Query: 255 ESSKDSDSNLLLIKK-LWDVALGPLKQVPMNLFIMYMAGNSISIFPIMMVGMLIVRPVKA 431
           E+ + +D +  L +K +WD A+GP K +PMN+F+MYMAG  +SIFPIMMVGM++ RP+KA
Sbjct: 41  EADRSADQHEHLARKRVWDTAMGPAKSLPMNMFMMYMAGGGVSIFPIMMVGMMVFRPLKA 100

Query: 432 LFATQSTFKMVE----GTQAIGQKIVYCIG 509
           LFA  STFK +E    G+  I  K+++C+G
Sbjct: 101 LFAVNSTFKPLESPATGSMFI-HKLIFCLG 129


>AL031627-17|CAA20950.2|  344|Caenorhabditis elegans Hypothetical
           protein Y102A5C.28 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 472 VPSTILKVLCVANSAFTGLTINMPTIIIGNIEIELPAMYIIKRFMGTCFK 323
           +P TIL   CV N  F   ++     +   I+  LP ++I+K +    F+
Sbjct: 262 IPVTILYTCCVLNIVFNPFSVATTIALFPAID-PLPTIFIVKNYRVALFE 310


>AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical
           protein T11F1.8 protein.
          Length = 888

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -2

Query: 527 KECLLYSDT------INNFLSDSLCTFNHFEST 447
           ++CL+Y  T      INN   D+ C FNHFE T
Sbjct: 449 EKCLMYQITYDYFIRINNQDCDNKCIFNHFELT 481


>Z82282-3|CAB05275.1|  638|Caenorhabditis elegans Hypothetical
           protein T07G12.3 protein.
          Length = 638

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 484 DKKLFIVSEYSKHSFSTL*VSEY-GIVTNSLQ*WVAFEEPPT 606
           D    I  ++  H ++T+   ++ G V +S    V FEEPPT
Sbjct: 260 DNSSHIFKDFKDHGYATMLFEDWEGNVVDSWPTCVGFEEPPT 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,415,057
Number of Sequences: 27780
Number of extensions: 391635
Number of successful extensions: 899
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)