Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30510
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    28   0.080
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   6.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.1  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 28.3 bits (60), Expect = 0.080
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 157 LKWALDFNQKNKQLSTELPSPPG-YSQSSNANYANHQKIRTQIYSSL 294
           ++W  D    + + ST    P   Y   +N +Y +HQ +RT +  +L
Sbjct: 91  MRWPGDATGLSNRSSTSSNDPKNQYKNQNNNHYTSHQHLRTHLRGTL 137


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +2

Query: 398 GWHVNSEAGEGAVCYTKYFQNG*RYTSY 481
           GW+     G    C T YF  G    SY
Sbjct: 189 GWNRYVPEGNMTACGTDYFNRGLLSASY 216


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +2

Query: 398 GWHVNSEAGEGAVCYTKYFQNG*RYTSY 481
           GW+     G    C T YF  G    SY
Sbjct: 65  GWNRYVPEGNMTACGTDYFNRGLLSASY 92


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 212 GSSVESCLFF 183
           GSS+ SCLFF
Sbjct: 372 GSSIWSCLFF 381


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 212 GSSVESCLFF 183
           GSS+ SCLFF
Sbjct: 425 GSSIWSCLFF 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,349
Number of Sequences: 438
Number of extensions: 5614
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)