Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30510
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10780.1 68418.m01253 expressed protein HSPC184, Homo sapiens...    44   8e-05
At1g33055.1 68414.m04073 expressed protein                             30   1.8  
At3g32070.1 68416.m04077 hypothetical protein                          29   3.2  
At4g06672.1 68417.m01069 hypothetical protein contains a non-con...    29   4.3  
At2g04020.1 68415.m00369 GDSL-motif lipase/hydrolase family prot...    29   4.3  
At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putativ...    28   7.4  
At2g04190.1 68415.m00404 meprin and TRAF homology domain-contain...    28   7.4  
At5g35792.1 68418.m04296 hypothetical protein                          27   9.8  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    27   9.8  

>At5g10780.1 68418.m01253 expressed protein HSPC184, Homo sapiens,
           EMBL:AF151018
          Length = 180

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 22/65 (33%), Positives = 39/65 (60%)
 Frame = +3

Query: 264 KDSDSNLLLIKKLWDVALGPLKQVPMNLFIMYMAGNSISIFPIMMVGMLIVRPVKALFAT 443
           KD+++   L +K W+VA  P K + M  F+M+MAGN++ +F I +    + +P+ AL + 
Sbjct: 53  KDAEATWKL-QKAWEVAQSPFKNLMMMGFMMWMAGNTVHLFSIGITFSALWQPISALQSV 111

Query: 444 QSTFK 458
              F+
Sbjct: 112 GKIFE 116



 Score = 35.9 bits (79), Expect = 0.028
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +2

Query: 488 KNCLLYRNIVNILLALYKCQSMGLLPTHSSDGWHLKSLQQDSEHIGRGVI 637
           K   L  N+  + L ++K  ++GLLPTH+SD        Q+ EH G G +
Sbjct: 129 KLVFLALNLGGLALGVWKLNTLGLLPTHASDWVSSLPPPQEVEHSGGGFV 178


>At1g33055.1 68414.m04073 expressed protein
          Length = 66

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 163 WALDFNQKNKQLSTELPSPPGYSQSS 240
           ++L F+  N  L   LPSPP YS+SS
Sbjct: 41  YSLPFHSSNTSLPLLLPSPPPYSRSS 66


>At3g32070.1 68416.m04077 hypothetical protein
          Length = 132

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 252 CESSKDSDSNLLLIKKLWDVAL 317
           CE  KD  ++L+ I+KLWD A+
Sbjct: 56  CEKFKDDRTDLMHIRKLWDKAM 77


>At4g06672.1 68417.m01069 hypothetical protein contains a
           non-consensus TT donor splice site, supported by
           homologous protein alignments.
          Length = 132

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 252 CESSKDSDSNLLLIKKLWDVAL 317
           CE  KD  ++L+ I+KLWD A+
Sbjct: 56  CERFKDDRNDLMHIRKLWDKAM 77


>At2g04020.1 68415.m00369 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL6 (GI:15054390), EXL1
           (GI:15054382) [Arabidopsis thaliana]; contains Pfam
           profile PF00657: Lipase/Acylhydrolase with GDSL-like
           motif
          Length = 261

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 436 LLHKVLSKWLKVHKLSDKKLFI 501
           LLHK L K  K+HKL  +K FI
Sbjct: 204 LLHKFLKKIEKLHKLGARKFFI 225


>At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putative
           (UBP23) identical to GI:11993486
          Length = 859

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
 Frame = +2

Query: 326 ETSTHESFYYVHGW*LYLYISNNDGWHVNS-EAGEGAVCYTKYFQNG*RYTSYRTKNCL- 499
           +T+ H+ + +V G+     I      HV +     G +   K   +  R  S   +NC  
Sbjct: 136 QTAAHQKYCHVAGFCALCAIQK----HVRTARQANGRILAPKDLVSNLRCISRNFRNCRQ 191

Query: 500 --LYRNIVNILLALYKCQSMGLLPTHSSDGW 586
              +  ++N+L  ++KC     +P+ SSD +
Sbjct: 192 EDAHEYMINLLECMHKCSLPSGVPSESSDAY 222


>At2g04190.1 68415.m00404 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 411

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 320 PFETSTHESFYYVHGW*LYLYISNN 394
           P+E+S  E+ Y+ H W L LY++ N
Sbjct: 138 PYESSVFEA-YFEHKWRLILYVNGN 161


>At5g35792.1 68418.m04296 hypothetical protein
          Length = 132

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 252 CESSKDSDSNLLLIKKLWDVAL 317
           CE  KD+ ++ + I+KLWD A+
Sbjct: 56  CEKFKDNRTDCMHIRKLWDKAI 77


>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
            trafficking regulator - Bos taurus, EMBL: AF114785
          Length = 3471

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 391  IGNIEIELPAMYIIKRFMGTCFKGPNAT 308
            +GN+ I+LP   +I  F GTC +   AT
Sbjct: 1290 LGNLSIQLPGKKLIFAFDGTCSEFMRAT 1317


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,214,578
Number of Sequences: 28952
Number of extensions: 360312
Number of successful extensions: 898
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)