Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30509
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   3.4  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   7.9  
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    25   7.9  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   7.9  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.9  

>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 10  PTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQL 174
           P PE ++E  K+A++   P K   +A ES     K  +++  + +  N   YR L
Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENL--KESHVNETPYRGL 529


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 279 LEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQ 386
           L+K+G++P   V++       +ED+ +T+G++ L +
Sbjct: 703 LKKQGVLPLTFVNEADYEKIDAEDKVSTRGIEQLLE 738


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 417 HFAKWRCVLKIGRNTPFVPSYPGKRQCSRPLA 512
           H  KW  VL    ++PF+ +   K QC + LA
Sbjct: 148 HTYKWSKVLSFPVDSPFIGTMEQKVQCCQCLA 179


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
 Frame = +2

Query: 362 PGSGRPRPALRPVQE------GRLPLRQVALRAEDRPQHPLRTKLSRKTPMFSPARFHLS 523
           PGSG PRP      E       +L      L A+   +   + KL +K  + SP   ++ 
Sbjct: 17  PGSGEPRPKTEKELERERQKAAKLEKYHAKLAAKKAKEEARKPKLDKKAKIASPVAEYVE 76

Query: 524 EPT 532
           + T
Sbjct: 77  KTT 79


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 453 RNTPFVPSYPGKRQCSRPLASICQSQRIVPIVEPEVLPDGEHELGPAPRKVTEG 614
           R TP +PS PG    SRP  S+   +++ P   P V P+   ++ P P   + G
Sbjct: 117 RGTPSLPSRPG----SRP--SVLNQEQVPP---PPVRPNVMSQMPPPPSYSSSG 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,253
Number of Sequences: 5004
Number of extensions: 63636
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)