Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30509
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0) 142 2e-34
SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0) 142 2e-34
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 34 0.096
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 34 0.096
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32) 32 0.51
SB_34292| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_36876| Best HMM Match : ig (HMM E-Value=2.9e-26) 30 1.6
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 30 1.6
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.6
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 29 3.6
SB_52174| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3) 28 6.3
SB_3318| Best HMM Match : Xan_ur_permease (HMM E-Value=7.20267e-43) 28 6.3
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41) 28 8.4
>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 949
Score = 142 bits (345), Expect = 2e-34
Identities = 79/140 (56%), Positives = 89/140 (63%), Gaps = 1/140 (0%)
Frame = +3
Query: 255 DGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE-DECTTQGLDDLAQRCAQYKKDGCHFAKW 431
DGTP V LL +GIIPGIKVDKGVV L G++ E TTQGLD L +RCAQYKKDGC FAKW
Sbjct: 87 DGTPFVRLLRDQGIIPGIKVDKGVVVLAGTDAGETTTQGLDGLGERCAQYKKDGCDFAKW 146
Query: 432 RCVLKIGRNTPFVPSYPGKRQCSRPLASICQSQRIVPIVEPEVLPDGEHELGPAPRKVTE 611
RCVLKI TP + ASICQ +VPIVEPEVL DG+H L A +KVTE
Sbjct: 147 RCVLKITDYTPSELAMKENANVLARYASICQQNGLVPIVEPEVLCDGDHTLERA-QKVTE 205
Query: 612 GRSGRRVTRR*NDQQVYLRG 671
+ D +YL G
Sbjct: 206 AVLS-ATYKALMDHHIYLEG 224
Score = 128 bits (309), Expect = 4e-30
Identities = 63/81 (77%), Positives = 71/81 (87%)
Frame = +1
Query: 13 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 192
TPEL+ ELK+IA+AIVA KGILAADESTGTMGKRL +IGVENTEENRR YRQLLF+S
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTEENRRLYRQLLFTSGK 65
Query: 193 VLSENISGVILFHETLYQKAE 255
+S ISGVILFHET+YQKA+
Sbjct: 66 EMSNAISGVILFHETVYQKAD 86
>SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 304
Score = 142 bits (345), Expect = 2e-34
Identities = 79/140 (56%), Positives = 89/140 (63%), Gaps = 1/140 (0%)
Frame = +3
Query: 255 DGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE-DECTTQGLDDLAQRCAQYKKDGCHFAKW 431
DGTP V LL +GIIPGIKVDKGVV L G++ E TTQGLD L +RCAQYKKDGC FAKW
Sbjct: 87 DGTPFVRLLRDQGIIPGIKVDKGVVVLAGTDAGETTTQGLDGLGERCAQYKKDGCDFAKW 146
Query: 432 RCVLKIGRNTPFVPSYPGKRQCSRPLASICQSQRIVPIVEPEVLPDGEHELGPAPRKVTE 611
RCVLKI TP + ASICQ +VPIVEPEVL DG+H L A +KVTE
Sbjct: 147 RCVLKITDYTPSELAMKENANVLARYASICQQNGLVPIVEPEVLCDGDHTLERA-QKVTE 205
Query: 612 GRSGRRVTRR*NDQQVYLRG 671
+ D +YL G
Sbjct: 206 AVLS-ATYKALMDHHIYLEG 224
Score = 128 bits (309), Expect = 4e-30
Identities = 63/81 (77%), Positives = 71/81 (87%)
Frame = +1
Query: 13 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 192
TPEL+ ELK+IA+AIVA KGILAADESTGTMGKRL +IGVENTEENRR YRQLLF+S
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTEENRRLYRQLLFTSGK 65
Query: 193 VLSENISGVILFHETLYQKAE 255
+S ISGVILFHET+YQKA+
Sbjct: 66 EMSNAISGVILFHETVYQKAD 86
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 34.3 bits (75), Expect = 0.096
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Frame = +2
Query: 269 GLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQVALR 439
G P E G P GR + RP +GR H PG P P + GR P Q
Sbjct: 372 GRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGRLPHEPGRPPYEQRRPP 431
Query: 440 AEDRPQHPLRTKLSRK--TPMFSPAR 511
E Q ++S + P+F P R
Sbjct: 432 HEKSWQAFEHQRISHEHGGPLFEPGR 457
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = +2
Query: 269 GLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLP 418
G P E G P GR + RP GR H PG P P + GR P
Sbjct: 337 GRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPP 389
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Frame = +2
Query: 269 GLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGS-----GRP--RPALRPVQEGRLP 418
G P E G P GR + RP GR H PG GRP P P + GRLP
Sbjct: 358 GRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGRLP 417
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = +2
Query: 269 GLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLP 418
G P E G P GR + RP GR H PG P P + GR P
Sbjct: 323 GRPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPP 375
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = +2
Query: 269 GLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLP 418
G P E G P GR + RP GR H PG P P + GR P
Sbjct: 344 GRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPHEPGRPP 396
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 34.3 bits (75), Expect = 0.096
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Frame = +2
Query: 269 GLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQVALR 439
G P E G P GR + RP +GR H PG P P + GR P Q
Sbjct: 138 GRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGRLPHEPGRPPYEQRRPP 197
Query: 440 AEDRPQHPLRTKLSRK--TPMFSPAR 511
E Q ++S + P+F P R
Sbjct: 198 HEKSWQAFEHQRISHEHGGPLFEPGR 223
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = +2
Query: 269 GLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLP 418
G P E G P GR + RP GR H PG P P + GR P
Sbjct: 103 GRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPP 155
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Frame = +2
Query: 269 GLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGS-----GRP--RPALRPVQEGRLP 418
G P E G P GR + RP GR H PG GRP P P + GRLP
Sbjct: 124 GRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGRLP 183
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = +2
Query: 269 GLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLP 418
G P E G P GR + RP GR H PG P P + GR P
Sbjct: 89 GRPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPP 141
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = +2
Query: 269 GLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLP 418
G P E G P GR + RP GR H PG P P + GR P
Sbjct: 110 GRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPHEPGRPP 162
>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
Length = 1074
Score = 31.9 bits (69), Expect = 0.51
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +2
Query: 245 RRLRWNASGLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGR---PRPALRPVQEGRL 415
RR W G+P G P GR G P G + G+ PRP +RP + GR+
Sbjct: 511 RRPGWRPGGIPGRTPGRRPG--GRPGNIPPFVPGLIIPSRRPGKRPGPRPGIRPGRGGRI 568
Query: 416 P 418
P
Sbjct: 569 P 569
>SB_34292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 868
Score = 31.5 bits (68), Expect = 0.68
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 429 WRCVLKIGRNTPFVPSY-PGKRQCSRPLASI 518
WRC GRN P +PSY R CS + ++
Sbjct: 505 WRCAFDDGRNPPLLPSYNSSSRICSNVVLNV 535
>SB_36876| Best HMM Match : ig (HMM E-Value=2.9e-26)
Length = 1128
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = -1
Query: 394 AQRWARSSRPWVVHSS-SDPNSGTTPLSTLMPGMM----PFFSSRETRGVPSQPSGKGSR 230
A+ A +SR WV S S+P S + L L P + S RETRGV SG +
Sbjct: 898 ARPLAGASRDWVTSSGFSNPASLSCVLDDLEPDTLYEVEVTLSVRETRGVTRSTSGPPPQ 957
Query: 229 GT 224
GT
Sbjct: 958 GT 959
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/87 (25%), Positives = 31/87 (35%)
Frame = +2
Query: 275 PAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQVALRAEDRP 454
P P H+ R+ P R +R P R R P + R + R D P
Sbjct: 854 PRDRRRRSPEHRRRREASPPRRDRKRYDSPPRRRRRSPSPPPRRRRRDSYSPSRRRRDSP 913
Query: 455 QHPLRTKLSRKTPMFSPARFHLSEPTH 535
+ RK+P SP R P++
Sbjct: 914 TPSPPPRRRRKSPSPSPPRRRRRSPSN 940
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 495 IGVFLDSLVR-RGCCGRSSARNATWRSGSRPSCTGRSAGRGRPDPGW 358
+G+ DS VR RGCC +S N W SC+ + + R D GW
Sbjct: 1296 LGINKDSCVRGRGCCWDNSVPNVPWCFYHPSSCSSINP-QLRRDCGW 1341
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -1
Query: 373 SRPWVVHSSSDPNSGTTPLSTLMPGMMPFFSSRETRGVPSQPSGKGSRGT 224
S P + H+ S P++ +TP + P M S+ T PS P G+ T
Sbjct: 671 STPSLTHTPSTPSTPSTPSTPSTPSMPNTPSTPSTPSTPSTPITPGTPST 720
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 397 WAQRWARSSRPWVVHSSSDPNSGTTPLSTLMPGMMPFFSSR 275
WAQ ++ SS PW S + SGT S+L ++ +S +
Sbjct: 5909 WAQNYSSSSSPWAPSSPASVRSGTYS-SSLATDILDTYSQK 5948
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 19 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDAVL 198
E+Q+ L K AQ +V+ +KG+ D + + K + +N E++R R + S D
Sbjct: 1006 EIQQGLNKAAQCVVSVSKGVSQWDRTCRALRKAEKRDDSDN-EDSRSRSASNVGSDDESR 1064
Query: 199 SE 204
SE
Sbjct: 1065 SE 1066
>SB_52174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 685
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 662 VHLLVVSAPCYTAARTTFSHLSGRGSKFVFAIR*DFGLDNRHDAL 528
V ++++ CY + HL+ +G ++V IR D RHD +
Sbjct: 600 VAMMIMIIMCYLSLGGRTLHLNNKGGEWVLEIRDPSSSDLRHDVI 644
>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
Length = 1353
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +2
Query: 302 RHQGRQGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLPL-RQVALRAEDRPQHPLRTKL 478
+ QG+QG RP + + + A RP Q R RQ + +++ RP+ +
Sbjct: 440 KDQGKQGARPRQASSKTKTSKPEDQDKQAARPRQSARQARPRQSSRKSKARPR-----QA 494
Query: 479 SRKTPMFSPARFHLSEPTHRADCR 550
SRKT P +P R R
Sbjct: 495 SRKTKTSKPQDQDKQDPRPRQKSR 518
>SB_3318| Best HMM Match : Xan_ur_permease (HMM E-Value=7.20267e-43)
Length = 774
Score = 28.3 bits (60), Expect = 6.3
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Frame = +3
Query: 297 IPGIKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPFVPS 476
+PG ++G++ L+ + T+G D+ Q + + D C KI + PFVP
Sbjct: 419 LPGTPEERGIL-LWR---KIVTEGGDESNQVASFHIYDLPFGLNRLCKFKIAKYLPFVPY 474
Query: 477 YPGKRQCSRPLASICQSQRIVPIVEPEV-LPDGEHELG-PAPRKVTEGRSGRR 629
YP A++ + P+ + +PD ++ L P+P + RR
Sbjct: 475 YPVSLHDESEEATVGMMEGKEPMKTNDTGIPDQDNNLAVPSPGNNNKNARSRR 527
>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
Length = 1487
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +2
Query: 101 VQWESVCRTSAWRTQRRTVVVIANSYSALTLCSPRTSL 214
+QW S C +S+++ +R ++ IA ++L+L TSL
Sbjct: 74 IQWHSTCYSSSYKKDKR-LLNIATDEASLSLRQAATSL 110
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,983,412
Number of Sequences: 59808
Number of extensions: 568738
Number of successful extensions: 2023
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2008
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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