Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30508
         (737 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   3.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.9  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 427 AHLPTAPPVPAEIP 468
           A+ P +PP P+E+P
Sbjct: 68  ANSPPSPPAPSELP 81


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 216 RNRSSIPMDHISGLRDRKRNFS*RAGLHKKP 308
           +++    +DH + L D K N     G  KKP
Sbjct: 447 KDKKGSQVDHKNNLGDSKNNQDGNNGEKKKP 477


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 216 RNRSSIPMDHISGLRDRKRNFS*RAGLHKKP 308
           +++    +DH + L D K N     G  KKP
Sbjct: 339 KDKKGSQVDHKNNLGDSKNNQDGNNGEKKKP 369


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 560 VQPVISSRMSEVFSKCHGPEG 498
           VQP+I      VFS   GP G
Sbjct: 393 VQPMIDQSNRAVFSPHAGPSG 413


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,179
Number of Sequences: 336
Number of extensions: 4047
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)