Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30508
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0130 + 1431176-1431343,1431759-1432016                           31   0.72 
08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518...    31   0.95 
01_01_1204 + 9689855-9690844                                           29   5.1  
06_03_1310 + 29238644-29240260                                         28   6.7  
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605...    28   6.7  
06_03_0854 + 25400855-25403741,25406174-25407708                       28   8.9  
06_03_0596 + 22608835-22610263,22610411-22610531,22610765-226118...    28   8.9  

>04_01_0130 + 1431176-1431343,1431759-1432016
          Length = 141

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 557 QPVISSRMSEVFS-KCHGPEGGSVAKKSRAFGISAGTGG-AVGKWAPCGW 414
           +PVI+S      + + +GP GG+  K+   F I  G G   VG W  CGW
Sbjct: 80  EPVITSLTFYTNAGRKYGPYGGN-GKQGTPFSIPVGKGCIVVGFWGRCGW 128


>08_02_0110 +
           12650328-12650552,12650827-12651423,12651480-12651857,
           12651997-12652218,12652407-12652483,12652553-12652631,
           12652920-12653105
          Length = 587

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 487 PRSLELLVSRLGPAVLLASGHLVAGTHFHPPDI 389
           P  L + VSR+G  +L+A+G  + G  FH  DI
Sbjct: 115 PCKLLIPVSRVGKKILVATGRFIPGHRFHCQDI 147


>01_01_1204 + 9689855-9690844
          Length = 329

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 548 ISSRMSEVFSKCHGPEGGSVAKKSRAFGISAGTGGAVGK-WAP 423
           +++   EV  KC     G V +   A G++ G GGA+   WAP
Sbjct: 23  VAAAEGEVEIKCPYCHSGFVEEIESARGVATGGGGAISSVWAP 65


>06_03_1310 + 29238644-29240260
          Length = 538

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 418 PQGAHLPTAPPVPAEIPKALDFLATLPPS 504
           P  +HLP  PP  +E PK+    +T PPS
Sbjct: 404 PTPSHLPPPPPTYSESPKSSMPPSTSPPS 432


>02_02_0007 +
           6056281-6057024,6057273-6057539,6057622-6057765,
           6057844-6058191,6058713-6059102
          Length = 630

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 424 GAHLPTAPPVPAEIPKALDFLATLPP 501
           G HLPT  P P  +P AL    +LPP
Sbjct: 46  GLHLPT--PTPLRLPAALPLRPSLPP 69


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 442 APPVPAEIPKALDFLATLPPSGP 510
           A P PA  P AL+ LA  PP+ P
Sbjct: 422 AAPAPAPAPAALEALAPPPPAAP 444


>06_03_0596 +
           22608835-22610263,22610411-22610531,22610765-22611864,
           22611969-22612327
          Length = 1002

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
 Frame = +2

Query: 326 RRRRHRANINILRLTVKLYTSNI---------WRMKMGSSHKVPTCQQHRRSQPRYQKL 475
           R RRH++ + +L + + + +  I         WR +M  + K+P C +H      Y+ +
Sbjct: 632 RNRRHKSLVLVLMIVIPIVSITIILLSFAAFFWRKRMQVTPKLPQCNEHVFKNITYENI 690


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,348,621
Number of Sequences: 37544
Number of extensions: 427053
Number of successful extensions: 1186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)