Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30508
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47596| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_19289| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  28   6.9  
SB_1301| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_50564| Best HMM Match : Allexi_40kDa (HMM E-Value=4.3)              28   9.1  

>SB_47596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 657

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 420 TRCPLANSTAGPSRDTKSSRLLGH 491
           TR PLA ST G S  TKSS L+ +
Sbjct: 244 TRIPLARSTGGSSAATKSSILINY 267


>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
 Frame = -2

Query: 529 RYSLSVMARKVVAWPRSLELLVSRLGPAVLLASGHLVAGTHFHPPDIGRV*LD-RQAQYI 353
           R  L V      A+PR L+ ++     A     G+L+   H H PD  R+       Q+ 
Sbjct: 315 RNQLGVRMLAQQAFPRQLDYVMDAYRQATQEPHGYLLVDFHQHTPDAYRLRSHILPNQFP 374

Query: 352 DIGPVPSAPLVQVFPGFLCSPALQLKFRFLSRNP 251
            +G +       +   + C P  +L+ R  S NP
Sbjct: 375 ILGEIHLRTPTGISYNY-CGPGTRLRQRLNSSNP 407


>SB_19289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 567

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -1

Query: 470 FGISAGTGGAVGKWAPCGW 414
           FGISAGTG  VG     GW
Sbjct: 254 FGISAGTGNMVGSDVVMGW 272


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 444 CCWQVGTLWLEPIFIRQILDVYNLTV 367
           CC+QVG   ++   I  +LD+ NLT+
Sbjct: 604 CCYQVGNFDIQSSAISTLLDLINLTL 629


>SB_1301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 444 CCWQVGTLWLEPIFIRQILDVYNLTV 367
           CC+QVG   ++   I  +LD+ NLT+
Sbjct: 15  CCYQVGNFDIQSSAISTLLDLINLTL 40


>SB_50564| Best HMM Match : Allexi_40kDa (HMM E-Value=4.3)
          Length = 290

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 486 GHATTFRAMTLREYLRHP 539
           GH T  R  T++ YLRHP
Sbjct: 243 GHKTKHRNQTIKSYLRHP 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,643,969
Number of Sequences: 59808
Number of extensions: 452928
Number of successful extensions: 917
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)