Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30508
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    30   2.0  
Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   3.4  
U22832-3|AAA64508.2|  359|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed ...    28   6.0  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    28   7.9  

>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 376 VIHVQYLADENGFQPQGAHLPTAPPVPAEIP 468
           +  +Q LA+++ F+ Q + +P  PP+PA +P
Sbjct: 285 IARIQSLAEQSSFE-QASTIPDRPPLPARLP 314



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 376 VIHVQYLADENGFQPQGAHLPTAPPVPAEIP 468
           +  +Q LA+++ F+ Q + +P  PP+PA +P
Sbjct: 379 IARIQSLAEKSSFE-QASTIPDRPPLPARLP 408



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 376 VIHVQYLADENGFQPQGAHLPTAPPVPAEIP 468
           +  +Q LA+++ F+ Q + +P  PP+PA +P
Sbjct: 473 IARIQSLAEKSSFE-QTSTIPDRPPLPARLP 502



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 376 VIHVQYLADENGFQPQGAHLPTAPPVPAEIP 468
           +  +Q LA+++ F+ Q + +P  PP+PA +P
Sbjct: 849 IARIQSLAEKSSFE-QTSTIPDRPPLPARLP 878


>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 607 KKGFTF*L*LLIFPYGHGFFFNG*VELSVPFLIFGILRFFL 729
           + GF F   LL+F    GFFF G   L+ P +  G+L  FL
Sbjct: 125 QNGFWFFKYLLMFGIIGGFFFIGSETLATPLMYIGMLGAFL 165


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 71  SSFQQFQHQPNYLQQVQPINSLYAKXXXXXXXXXXXTVHNTEPIPIVNQEQVINP 235
           S  +QF H+P ++++  P+ + YA            T  +++P P + Q   I P
Sbjct: 177 SVHEQFNHRPAHVEEEIPLENHYAPPPHQQIPDDLNTSFSSQPPPPIEQFGAIPP 231


>U22832-3|AAA64508.2|  359|Caenorhabditis elegans Hypothetical
           protein C09F5.3 protein.
          Length = 359

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 376 VIHVQYLADENGFQPQGAHLPTAPPVPAEIPK 471
           + HVQ   D+  F P    +PT PP P   PK
Sbjct: 254 ITHVQMSHDQETFYPPSLPIPT-PPSPKSTPK 284


>AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed
           with polycystins protein4 protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 436 PTAPPVPAEIPKALDFLATLPPSGP 510
           P  PP P E P    F   LPPS P
Sbjct: 377 PELPPNPVEAPSITPFTVGLPPSVP 401


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +1

Query: 400 DENGFQPQG---AHLPTAPPVPAEIPKALDFLATLP-PSGP 510
           D +G  P G     LPT  P+P+E P    ++   P PSGP
Sbjct: 516 DPSGAPPSGMPPVPLPTDLPIPSESPSFFQWIFGRPKPSGP 556


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,289,550
Number of Sequences: 27780
Number of extensions: 351519
Number of successful extensions: 969
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)