Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30508
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    77   1e-16
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.0  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   6.9  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 77.4 bits (182), Expect = 1e-16
 Identities = 37/82 (45%), Positives = 50/82 (60%)
 Frame = +1

Query: 253 DYETGNGISAEEQGYIKNQGIPXXXXXXXXXXXXXXAPDGQVIHVQYLADENGFQPQGAH 432
           ++ET NGIS +E G  K   +               APDGQ + + Y+ADENGFQ QG+H
Sbjct: 45  NFETSNGISHQESGQPKQ--VDNETPVVSQGSDSYTAPDGQQVSITYVADENGFQVQGSH 102

Query: 433 LPTAPPVPAEIPKALDFLATLP 498
           +PTAPP+P EI +AL++ A  P
Sbjct: 103 IPTAPPIPPEIQRALEWNAAHP 124


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = -1

Query: 554 PVISSRMSEVFSKCHGPEGGSVAKKSRAFGISAGTGGAVGKWAP 423
           P+       V +  H PE  +   + RA       G  VG W+P
Sbjct: 160 PITKLTAMGVLNNLHDPEYSARENELRALSSLFSKGCLVGTWSP 203


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = -1

Query: 554 PVISSRMSEVFSKCHGPEGGSVAKKSRAFGISAGTGGAVGKWAP 423
           P+       V +  H PE  +   + RA       G  VG W+P
Sbjct: 160 PITKLTAMGVLNNLHDPEYSARENELRALSSLFSKGCLVGTWSP 203


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = -1

Query: 554 PVISSRMSEVFSKCHGPEGGSVAKKSRAFGISAGTGGAVGKWAP 423
           P+       V +  H PE  +   + RA       G  VG W+P
Sbjct: 160 PITKLTAMGVLNNLHDPEYSARENELRALSSLFSKGCLVGTWSP 203


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 242 SYKWITRQETEFQ 280
           SYKWITR  T  Q
Sbjct: 84  SYKWITRSGTREQ 96


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 236 DGSYKWITRQETEFQLK 286
           DG YKWI+  +T+  ++
Sbjct: 76  DGPYKWISPGDTKVMVE 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,970
Number of Sequences: 438
Number of extensions: 4713
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)