Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30508
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38210.1 68418.m04606 serine/threonine protein kinase family ...    28   5.6  
At5g32590.1 68418.m03867 myosin heavy chain-related similar to M...    27   9.8  
At2g45720.1 68415.m05686 armadillo/beta-catenin repeat family pr...    27   9.8  

>At5g38210.1 68418.m04606 serine/threonine protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 686

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 304 FLCSPALQLKFRFLSRNPLI*SIGIDDLFLINYGNRFGI 188
           +LC+P+L    +F+  N  + SI  DDL+  + G  F I
Sbjct: 138 YLCNPSLHYPAKFICPNKGVGSIHQDDLYHNHCGGIFNI 176


>At5g32590.1 68418.m03867 myosin heavy chain-related similar to
           Myosin heavy chain, non-muscle (Zipper protein) (Myosin
           II)(SP:Q99323) {Drosophila melanogaster}
          Length = 761

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 400 DENGFQPQGAHLPTAPPVPAEIPKALDFLATLPPS 504
           D++G  P     P AP VP  IP+A+     LPPS
Sbjct: 678 DQSG--PSDPMEPEAPIVPVTIPEAVAIPPELPPS 710


>At2g45720.1 68415.m05686 armadillo/beta-catenin repeat family
           protein contains Pfam profile PF00514:
           Armadillo/beta-catenin-like repeat
          Length = 553

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 368 TVKLYTSNIWRMKMGSSHKVPTCQQHRRSQPRYQK 472
           TVK ++S  WR+ +    K+PTC     S P + K
Sbjct: 36  TVKGFSSR-WRVIISRLEKIPTCLSDLSSHPCFSK 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,432,361
Number of Sequences: 28952
Number of extensions: 329304
Number of successful extensions: 735
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)