Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30507
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 82 7e-17
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 61 2e-10
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 45 1e-05
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 41 2e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 39 8e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 36 0.004
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 34 0.018
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.054
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 33 0.054
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 30 0.29
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 28 1.2
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 27 2.7
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 27 3.6
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 26 4.7
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 6.2
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 82.2 bits (194), Expect = 7e-17
Identities = 44/102 (43%), Positives = 66/102 (64%), Gaps = 3/102 (2%)
Frame = +3
Query: 246 CFCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRE--TRANMQHEREFSVWVGDL 419
CF F + EA AM +N KPIPGT + F+LN AS ++ E+S++VGDL
Sbjct: 137 CFVEFASPHEASSAM-SMNNKPIPGTNHL--FKLNWASGGGLREKSISKASEYSIFVGDL 193
Query: 420 SPDVDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVRF 542
SP+V+++ +Y +FAS+Y S K+AK++ D + + +G GFVRF
Sbjct: 194 SPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 56.0 bits (129), Expect = 5e-09
Identities = 26/48 (54%), Positives = 35/48 (72%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
LWMG LEP +TE+FI +N LG + + VK++RN++TG AGY FV F
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLG-KAVKVKLIRNRYTGMNAGYCFVEF 141
Score = 31.1 bits (67), Expect = 0.17
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 88 KSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
KS A + +++G L PN+ E + + F + K+M + T GY FV F
Sbjct: 178 KSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 29.1 bits (62), Expect = 0.67
Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Frame = +3
Query: 261 QTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTAS--RETRANMQHEREFSV------WVGD 416
+ D++ +D +K N +P+ P+ + S E +N R+ +V W+G+
Sbjct: 40 EQDDQEVDNDYKSNDEPVQSQDPISPNMASNESGNSENTSNYGSSRDENVYQKTTLWMGE 99
Query: 417 LSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQKGMGFVRF 542
L P V + + +V+ + ++K + + + G FV F
Sbjct: 100 LEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEF 141
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 60.9 bits (141), Expect = 2e-10
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Frame = +3
Query: 246 CFCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRAN-MQHEREFSVWVGDLS 422
CF F + A A+ K N IPG + T N + + EFS++VGDL
Sbjct: 131 CFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLL 190
Query: 423 PDVDDYSLYRVFASKYTSIKTAKVILDN-SAIQKGMGFVRF 542
P +D L+ F S Y S +AK+I+D + + + GFVRF
Sbjct: 191 PTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRF 231
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 106 MQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPA--GYAFVIF 261
M LWMG LEP M +FI + L + P+ VKVMR+K + Y FV F
Sbjct: 83 MSDTLWMGDLEPWMDATFIQQLWASLNE-PVNVKVMRSKASSSETLISYCFVQF 135
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +3
Query: 396 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQKGMGFVRF 542
F ++VG+L DV+D SLY+ F S+Y S+ KV+ D +G GFV F
Sbjct: 30 FRLFVGNLGNDVNDESLYQAF-SEYPSLVKTKVVRDREGKTRGFGFVSF 77
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 40.7 bits (91), Expect = 2e-04
Identities = 30/98 (30%), Positives = 49/98 (50%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPD 428
FC F +++ A LN + G P+ R+N AS++ N +++VG+L P
Sbjct: 56 FCEFLHEQDVEYACQILNQVKLFGK-PI---RVNRASQDRGVNTLIGA--NLFVGNLDPL 109
Query: 429 VDDYSLYRVFASKYTSIKTAKVILDNSAIQKGMGFVRF 542
VD+ LY F++ +K +V D + KG GFV +
Sbjct: 110 VDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY 147
Score = 32.3 bits (70), Expect = 0.072
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
L++G+L+P + E + F+ LGQ A +V R++ G GY FV +
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDE-NGRSKGYGFVSY 147
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 38.7 bits (86), Expect = 8e-04
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLA-VKVMRNKFTGEPAGYAFVIFRR 267
+++ L + ES I F R G P+ ++V+RNK TG+ GYAFV+F R
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYG--PIERIRVVRNKVTGKSMGYAFVVFER 150
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/60 (25%), Positives = 36/60 (60%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIFRRMKKQLTQCTN 297
+++G+L+ ++ E I+ F+ G+ P+ + ++R+K TG+ G+AF+ + + + N
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGE-PVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDN 91
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 34.3 bits (75), Expect = 0.018
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 366 TRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVRF 542
T+ + +V+VG LS +VDD L + F +Y +I A+VI+D S KG G+V F
Sbjct: 253 TKPSQDSNETCTVFVGRLSWNVDDQWLGQEF-EEYGTIVGARVIMDGQSGRSKGYGYVDF 311
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 32.7 bits (71), Expect = 0.054
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
L++G+L + + + F R GQ P +V++ +K +G GYAFV F
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVP-SVRIPTDKTSGRQKGYAFVEF 140
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 32.7 bits (71), Expect = 0.054
Identities = 19/98 (19%), Positives = 44/98 (44%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPD 428
F HF + E A A+ +NG + V ++ R+++ +V++ +L +
Sbjct: 212 FVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTE 271
Query: 429 VDDYSLYRVFASKYTSIKTAKVILDNSAIQKGMGFVRF 542
+ + +F ++ I + ++ D + +G GFV +
Sbjct: 272 ITEQEFSDLF-GQFGEITSLSLVKDQNDKPRGFGFVNY 308
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 399 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQKGMGFV 536
++++ +L +VDD L F S + +I +AK++ D KG GFV
Sbjct: 365 NLFIKNLQDEVDDERLKAEF-SAFGTITSAKIMTDEQGKSKGFGFV 409
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 30.3 bits (65), Expect = 0.29
Identities = 15/60 (25%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 85 MKSPKMAMQCQ-LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
+++ K ++ Q +++G+++ ++T + + F G V ++ +KFTG P G+A++ F
Sbjct: 45 LRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVN-RVTILCDKFTGHPKGFAYIEF 103
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
L++ L P + + F+R G + ++ +V+R+K TG+ YAF+ F
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFG-KIISCQVIRDKETGDSLQYAFIEF 292
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIFRRM 270
L++G L E + F++ G L +++ RN+ TG YAF+ F +
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGP-VLRLRMSRNRKTGSSKHYAFIEFESL 156
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 291 HKLNGKPIPGTFPVVRFRLNTASRE 365
H G PIPG+ P + NTAS +
Sbjct: 311 HGSAGFPIPGSVPSTSYHANTASED 335
>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 270 EEAIDAMHKLNGKPIPGTFPVVRFRLNTAS 359
EE +D NG+ +PGT P FR N A+
Sbjct: 15 EELLDECDSFNGEFVPGTIP---FRANGAA 41
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 323 CAWYGFSIQFVHCVNCFFIR 264
CAW + FV C+N F +R
Sbjct: 197 CAWITIFLVFVICINLFGVR 216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,751
Number of Sequences: 5004
Number of extensions: 69341
Number of successful extensions: 217
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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