Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30507
(720 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 48 1e-05
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 44 9e-05
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 37 0.019
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.076
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.13
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.18
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 33 0.31
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 32 0.41
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 32 0.54
SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6) 32 0.54
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 31 1.2
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 31 1.2
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 30 1.6
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0) 30 1.6
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 29 3.8
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_32483| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 28 6.6
SB_50330| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-17) 28 8.8
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 28 8.8
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 47.6 bits (108), Expect = 1e-05
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASR--ETRANMQHERE--------F 398
F F+T EEA +A++ LNGK I G A R E +A ++ +R+
Sbjct: 153 FVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGV 212
Query: 399 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQKGMGFVRF 542
++++ +L +DD L F S Y +I +AKV+ D+ KG GFV F
Sbjct: 213 NLYIKNLDDPIDDERLREEF-SPYGTISSAKVMKDDKGNSKGFGFVCF 259
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 399 SVWVGDLSPDVDDYSLYRVF--ASKYTSIKTAKVILDNSAIQKGMGFVRF 542
S++VGDL+PDV + LY F A SI+ + ++ ++ G +V F
Sbjct: 14 SLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSL--GYAYVNF 61
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 44.4 bits (100), Expect = 9e-05
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +3
Query: 393 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVRF 542
+F ++ GDL +V D SL R FA KYTS AK++ D S KG GFV F
Sbjct: 216 DFRIFCGDLGSEVTDESLTRAFA-KYTSFLKAKIVRDKKSNKSKGYGFVSF 265
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 36.7 bits (81), Expect = 0.019
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIFRR 267
+++GSL P+ ES I F+ LG++ VK +R +G+ G+AFV R+
Sbjct: 44 IFVGSLHPSTVESTIFEYFSTLGEQVEHVKCIRT-LSGKSKGFAFVRLRK 92
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 35.9 bits (79), Expect = 0.033
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +3
Query: 399 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD 503
+V+VG+L PDV DY L ++F S+Y SI KV D
Sbjct: 616 TVYVGNLPPDVKDYELQQMF-SQYGSILETKVFAD 649
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 34.7 bits (76), Expect = 0.076
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = +1
Query: 97 KMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIFRRMKK 276
KM +C+ ++G+L+ + E+ + F+R + V+V+ ++ T P G+AFV F KK
Sbjct: 225 KMGEECKCYIGNLDFKVNEADLQDRFSRYDV--VDVQVISDRETQRPRGFAFVTF-GSKK 281
Query: 277 QLTQCTN 297
+ N
Sbjct: 282 NMEDAIN 288
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 196 LAVKVMRNKFTGEPAGYAFVIF 261
L+VKV+ ++ TG P G+ FV F
Sbjct: 36 LSVKVITDRETGRPRGFGFVTF 57
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 115 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIFR 264
+L++GSL N+TE+ + A F G +V+++ + T GY FV FR
Sbjct: 243 RLYVGSLHFNITEAMVKAVFEPFGTVD-SVQLIYDSETNRSKGYGFVQFR 291
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +1
Query: 76 KSLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFV 255
K+ + + + L++G+L+ + E + F+ G K+MR+ TG G+AF+
Sbjct: 88 KASAHNKNLDVGANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFI 147
Query: 256 IF 261
F
Sbjct: 148 NF 149
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 32.7 bits (71), Expect = 0.31
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = +3
Query: 345 LNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQKG 524
+N + A Q + ++++ +L + D+ L +F SKY + + +++ D KG
Sbjct: 162 VNKGIQAQMAKQQEQDPTNLYIQNLPQNCDEAMLENMF-SKYGKVISTRILRDKDTNSKG 220
Query: 525 MGFVR 539
+GF R
Sbjct: 221 VGFAR 225
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 32.3 bits (70), Expect = 0.41
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +1
Query: 64 FEKYKSLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAG 243
F ++ + + KMA +W+G L ++TE+ ++ FN+ G P+ V+ +G+
Sbjct: 508 FWVFQEVNEGFKMAASFPVWIGGLSEDVTENVLLELFNKFG--PVKDVVILRDESGKSRQ 565
Query: 244 YAFVIF 261
FV F
Sbjct: 566 SGFVHF 571
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +1
Query: 115 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIFRRMKK 276
+L++G L T+ + F++ G+ + V + + TG P G+AFV F+ +
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGEL-VGVDIKMDALTGRPRGFAFVQFKHQSE 82
>SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)
Length = 349
Score = 31.9 bits (69), Expect = 0.54
Identities = 12/18 (66%), Positives = 17/18 (94%)
Frame = +3
Query: 393 EFSVWVGDLSPDVDDYSL 446
EFS++VGDL+PDV+D+ L
Sbjct: 116 EFSIFVGDLTPDVNDHML 133
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +1
Query: 112 CQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIFRRMKKQLTQC 291
C++++G + ++ E ++ F G P+ + F G+ GYAFV++ K +C
Sbjct: 74 CEVFVGKIPRDLYEDELVPVFETAG--PIYEVRLMMDFNGQNRGYAFVVY-TSKDDAKRC 130
Query: 292 TN*MEN 309
+ N
Sbjct: 131 VKTLNN 136
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIFRR 267
L++ L P T+ + F+R G L+ +V+R++ TGE YAF+ F +
Sbjct: 122 LFVCKLNPVTTDEDLEIIFSRFGTI-LSCEVIRDQKTGESLQYAFIEFEK 170
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFS 401
F F +A DA+H LNG+ + G VV F + R + + R+FS
Sbjct: 726 FVEFDDHRDAEDAVHDLNGRDLIGERVVVEF---SKGRRSEGGGRDRRDFS 773
>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 3312
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -2
Query: 632 SCANFGEVFVRSPQYPF-IAYGALRCSSSLPKSDKAHTLLYSRII*YHFSSFYGSIFRSK 456
SC ++GE FV +PF G R SS P +DK + +RI+ H SI RS
Sbjct: 1707 SCKSWGEAFVEGLFWPFNHLIGRKRRSSETPGNDKRYK--QTRIV--HVRDIGHSIPRSP 1762
Query: 455 HSIKR 441
S+ +
Sbjct: 1763 RSVNK 1767
>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 587 PFIAYGALRCSSSLPKSDKAHTLL 516
PFI G +RC+ S P+S K +LL
Sbjct: 443 PFILLGVIRCAGSTPRSGKHKSLL 466
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 139 PNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFV 255
P+M++ I F +G + K++R++ TG+ GYAFV
Sbjct: 36 PSMSQEDIKKIFGTVGN-VTSCKLIRDRATGQSLGYAFV 73
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +1
Query: 100 MAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
M + + ++G+L ++ E + F+ G + VKV+ ++ TG P G+ FV F
Sbjct: 1 MGEEYRCYIGNLSYSVDEQALEEKFH--GCDVVDVKVITDRETGRPRGFGFVTF 52
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 115 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFT--GEPAGYAFVIFRR 267
+LW+G+L+ ++E I+ + G+ + GEP GY FV F++
Sbjct: 388 KLWIGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFKK 440
>SB_32483| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +3
Query: 303 GKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIK 482
GKP+ GT R +NT SR+T + + W GD D + S+ F + +
Sbjct: 142 GKPVNGTKGKGRKSVNTESRKT----MYSLTAAYWRGD---DGGERSMCITFGLFFFVVA 194
Query: 483 TAKVILDNSAIQKGM 527
A +++D S I G+
Sbjct: 195 MAVLVIDESLIDFGL 209
>SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2905
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 109 QCQLWMGSLEPNMTESFIMAAFNRLGQ 189
+C+L + SL PN F +AA+NR GQ
Sbjct: 760 KCRLMVKSLVPNEKYVFAVAAYNRQGQ 786
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/91 (20%), Positives = 47/91 (51%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIFRRMKKQLTQCTN 297
+++G++ +E + F+ +G ++ +++ ++ TG+P GY F ++ + L+ N
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGP-VISFRLVFDRETGKPKGYGFCEYKDQETALSAMRN 85
Query: 298 *MENPYQAHFQWLDLD*TQHPEKLEPICNMK 390
N Y+ + + L +D + E I +M+
Sbjct: 86 --LNGYELNGRALRVDSAASEKNKEEIKSME 114
>SB_50330| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-17)
Length = 452
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/66 (22%), Positives = 35/66 (53%)
Frame = +1
Query: 85 MKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIFR 264
+++ ++AM +++GSL N ++ N++ +RP+ ++ N E G + ++F
Sbjct: 36 LRAIRLAMYTIVFLGSLIGNSVVVRVIQELNKMIKRPITYYLITNLALAELLGTSCMLFF 95
Query: 265 RMKKQL 282
R +L
Sbjct: 96 RAYVEL 101
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Frame = +1
Query: 193 PLAVKVMRN------KFTGEPAGYAFV--IFRRMKKQLTQCTN*MENPYQAHFQWLDLD* 348
PL K +RN + + + AG+ FV F R K C+ + P+ H Q L+
Sbjct: 381 PLEAKNIRNMKQIGCRLSAKVAGFFFVTIFFDRRKITSAHCSCQSQRPWCQHVQETALER 440
Query: 349 TQHPEK 366
+HPE+
Sbjct: 441 IRHPER 446
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,016,302
Number of Sequences: 59808
Number of extensions: 479636
Number of successful extensions: 825
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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