Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30507
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = +1

Query: 115  QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPA 240
            +L +  L P    + ++ A+N++G  PL+  ++       P+
Sbjct: 1071 ELRLTGLRPYTKYTLVVQAYNQVGSGPLSEPLLTQTMEDVPS 1112


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = +1

Query: 115  QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPA 240
            +L +  L P    + ++ A+N++G  PL+  ++       P+
Sbjct: 1067 ELRLTGLRPYTKYTLVVQAYNQVGSGPLSEPLLTQTMEDVPS 1108


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 588 VLWTPDKNLSKICTAVPKPKK 650
           +L+ PDKN+ +  T   K KK
Sbjct: 763 ILFQPDKNIRRKVTMGDKSKK 783


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 588 VLWTPDKNLSKICTAVPKPKK 650
           +L+ PDKN+ +  T   K KK
Sbjct: 853 ILFQPDKNIRRKVTMGDKSKK 873


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,484
Number of Sequences: 438
Number of extensions: 4214
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)