Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30507
(720 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 79 3e-15
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 77 1e-14
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 77 1e-14
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 71 6e-13
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 71 6e-13
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 71 8e-13
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 71 1e-12
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 66 2e-11
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 62 3e-10
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 62 4e-10
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 50 2e-06
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 47 1e-05
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 44 8e-05
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 44 1e-04
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 44 1e-04
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 43 2e-04
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 42 5e-04
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 40 0.002
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 40 0.002
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 38 0.007
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 38 0.009
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 37 0.012
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 37 0.012
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 36 0.020
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 36 0.020
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 34 0.082
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 34 0.11
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 34 0.11
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 33 0.14
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 33 0.19
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 33 0.19
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 32 0.33
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 32 0.33
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 32 0.33
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 31 0.58
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 31 0.58
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 31 0.77
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 31 0.77
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 31 0.77
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 31 0.77
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 31 0.77
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 30 1.3
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 30 1.8
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 30 1.8
At1g34110.1 68414.m04230 leucine-rich repeat transmembrane prote... 30 1.8
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 29 2.3
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 29 3.1
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 29 4.1
At5g02290.2 68418.m00153 protein kinase, putative similar to pro... 29 4.1
At5g02290.1 68418.m00152 protein kinase, putative similar to pro... 29 4.1
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 28 5.4
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 28 5.4
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 28 5.4
At2g47310.1 68415.m05906 flowering time control protein-related ... 28 5.4
At2g39660.1 68415.m04864 protein kinase, putative similar to pro... 28 5.4
At2g33710.1 68415.m04132 AP2 domain-containing transcription fac... 28 5.4
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 28 5.4
At1g69790.1 68414.m08030 protein kinase, putative similar to pro... 28 5.4
At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family... 28 7.2
At3g55450.1 68416.m06158 protein kinase, putative similar to pro... 28 7.2
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 28 7.2
At1g06490.1 68414.m00688 glycosyl transferase family 48 protein ... 28 7.2
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 27 9.5
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 27 9.5
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 27 9.5
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 27 9.5
At3g09010.1 68416.m01055 protein kinase family protein contains ... 27 9.5
At3g01300.1 68416.m00039 protein kinase, putative similar to pro... 27 9.5
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 79.0 bits (186), Expect = 3e-15
Identities = 44/102 (43%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHER--EFSVWVGDLS 422
F F++ + A + + NG P+P T FRLN AS T + S++VGDL+
Sbjct: 150 FVEFESHDVADKVLQEFNGAPMPNTDQP--FRLNWASFSTGEKRLENNGPDLSIFVGDLA 207
Query: 423 PDVDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVRFG 545
PDV D L+ F+ KY S+K AKV+LD N+ KG GFVRFG
Sbjct: 208 PDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFG 249
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPL-AVKVMRNKFTGEPAGYAFVIF 261
+W+G L+ M E+++ +AF +R + ++KV+RNK G GY FV F
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEF 153
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 399 SVWVGDLSPDVDDYSLYRVFAS-KYTSIKTAKVILD-NSAIQKGMGFVRF 542
++WVGDL +D+ L F S + I + KVI + ++ +G GFV F
Sbjct: 104 TIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEF 153
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 77.0 bits (181), Expect = 1e-14
Identities = 44/102 (43%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHER--EFSVWVGDLS 422
F F++ + A + + NG +P T FRLN AS T + S++VGDLS
Sbjct: 148 FVEFESHDVADKVLREFNGTTMPNTDQP--FRLNWASFSTGEKRLENNGPDLSIFVGDLS 205
Query: 423 PDVDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVRFG 545
PDV D L+ F+ KY S+K AKV+LD N+ KG GFVRFG
Sbjct: 206 PDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFG 247
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPL-AVKVMRNKFTGEPAGYAFVIF 261
+W+G L M E+++ ++F +R + +VKV+RNK G GY FV F
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEF 151
Score = 33.1 bits (72), Expect = 0.19
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 399 SVWVGDLSPDVDDYSLYRVFAS-KYTSIKTAKVILD-NSAIQKGMGFVRF 542
++WVGDL +D+ L FAS I + KVI + N+ + +G GFV F
Sbjct: 102 TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEF 151
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 77.0 bits (181), Expect = 1e-14
Identities = 44/102 (43%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHER--EFSVWVGDLS 422
F F++ + A + + NG +P T FRLN AS T + S++VGDLS
Sbjct: 148 FVEFESHDVADKVLREFNGTTMPNTDQP--FRLNWASFSTGEKRLENNGPDLSIFVGDLS 205
Query: 423 PDVDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVRFG 545
PDV D L+ F+ KY S+K AKV+LD N+ KG GFVRFG
Sbjct: 206 PDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFG 247
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPL-AVKVMRNKFTGEPAGYAFVIF 261
+W+G L M E+++ ++F +R + +VKV+RNK G GY FV F
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEF 151
Score = 33.1 bits (72), Expect = 0.19
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 399 SVWVGDLSPDVDDYSLYRVFAS-KYTSIKTAKVILD-NSAIQKGMGFVRF 542
++WVGDL +D+ L FAS I + KVI + N+ + +G GFV F
Sbjct: 102 TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEF 151
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 71.3 bits (167), Expect = 6e-13
Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPD 428
F F + A + N PIP +FP FRLN AS + +++++VGDL+ D
Sbjct: 107 FIEFASHAAAERVLQTFNNAPIP-SFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAAD 165
Query: 429 VDDYSLYRVFASKYTSIKTAKVILDN-SAIQKGMGFVRF 542
V DY L F + Y S+K AKV++D + KG GFVRF
Sbjct: 166 VTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRF 204
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
LW+G L+ M E+F+ F G+ ++ KV+RNK TG+ GY F+ F
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEM-VSAKVIRNKQTGQVEGYGFIEF 110
Score = 31.1 bits (67), Expect = 0.77
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 399 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQ-KGMGFVRF 542
++W+GDL +D+ LY FA + +AKVI + Q +G GF+ F
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMV-SAKVIRNKQTGQVEGYGFIEF 110
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 71.3 bits (167), Expect = 6e-13
Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPD 428
F F + A + N PIP +FP FRLN AS + +++++VGDL+ D
Sbjct: 107 FIEFASHAAAERVLQTFNNAPIP-SFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAAD 165
Query: 429 VDDYSLYRVFASKYTSIKTAKVILDN-SAIQKGMGFVRF 542
V DY L F + Y S+K AKV++D + KG GFVRF
Sbjct: 166 VTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRF 204
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
LW+G L+ M E+F+ F G+ ++ KV+RNK TG+ GY F+ F
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEM-VSAKVIRNKQTGQVEGYGFIEF 110
Score = 31.1 bits (67), Expect = 0.77
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 399 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQ-KGMGFVRF 542
++W+GDL +D+ LY FA + +AKVI + Q +G GF+ F
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMV-SAKVIRNKQTGQVEGYGFIEF 110
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 70.9 bits (166), Expect = 8e-13
Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRET--RANMQHEREFSVWVGDLS 422
F F + A + + +G +P + FR+N AS T + +++ + SV+VGDLS
Sbjct: 153 FVEFLSRAAAEEVLQNYSGSVMPNSDQP--FRINWASFSTGEKRAVENGPDLSVFVGDLS 210
Query: 423 PDVDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVRFG 545
PDV D L+ F+ +Y S+K+AKV++D N+ KG GFVRFG
Sbjct: 211 PDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFG 252
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
LW+G L M E+++ + F+ G+ +VKV+RNK T + GY FV F
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVS-SVKVIRNKLTSQSEGYGFVEF 156
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 399 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQ-KGMGFVRF 542
++WVGDL +D+ L+ F S + + KVI + Q +G GFV F
Sbjct: 109 TLWVGDLLHWMDETYLHSCF-SHTGEVSSVKVIRNKLTSQSEGYGFVEF 156
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 70.5 bits (165), Expect = 1e-12
Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHER--EFSVWVGDLS 422
F F + A +A+ +G +P FRLN AS T E + S++VGDL+
Sbjct: 164 FVEFLSRSAAEEALQSFSGVTMPNAEQP--FRLNWASFSTGEKRASENGPDLSIFVGDLA 221
Query: 423 PDVDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVRFG 545
PDV D L FA +Y S+K AKV++D N+ KG GFVRFG
Sbjct: 222 PDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFG 263
Score = 35.9 bits (79), Expect = 0.027
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
LW+G L M E+++ F+ + +VKV+RNK T + GY FV F
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVS-SVKVIRNKQTCQSEGYGFVEF 167
Score = 31.1 bits (67), Expect = 0.77
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 399 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQ-KGMGFVRF 542
++WVGDL +D+ L+ F S + + KVI + Q +G GFV F
Sbjct: 120 TLWVGDLLHWMDETYLHTCF-SHTNEVSSVKVIRNKQTCQSEGYGFVEF 167
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 66.1 bits (154), Expect = 2e-11
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPD 428
F F + A + NG +PGT + FRLN AS + + + S++VGDL+PD
Sbjct: 69 FIEFISHAAAERTLQTYNGTQMPGT--ELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPD 126
Query: 429 VDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVRF 542
V DY L F Y+S++ AKV+ D ++ KG GFV+F
Sbjct: 127 VTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKF 165
Score = 48.4 bits (110), Expect = 5e-06
Identities = 20/48 (41%), Positives = 35/48 (72%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
LW+G L+ + E+++ + F++ G+ ++VKV+RNK TG+P GY F+ F
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGEL-VSVKVIRNKITGQPEGYGFIEF 72
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 62.5 bits (145), Expect = 3e-10
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPD 428
F F + A + NG P+P T R A + + +++VGDL+P+
Sbjct: 105 FIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPE 164
Query: 429 VDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVRF 542
V DY L F + Y S+K AKV+LD + KG GFVRF
Sbjct: 165 VTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRF 203
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
LW+G L+ M E++IM+ F + G+ A KV+RNK TG+ GY F+ F
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSA-KVIRNKLTGQSEGYGFIEF 108
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 399 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQ-KGMGFVRF 542
S+W+GDL +D+ + VFA +AKVI + Q +G GF+ F
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQS-GEATSAKVIRNKLTGQSEGYGFIEF 108
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 62.1 bits (144), Expect = 4e-10
Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHER-EFSVWVGDLSP 425
F F A + NG P+P + FRLN A Q E E +V+VGDL+P
Sbjct: 125 FIEFVNHATAERNLQTYNGAPMPSSEQA--FRLNWAQLGAGERRQAEGPEHTVFVGDLAP 182
Query: 426 DVDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVRF 542
DV D+ L F + Y+S+K AKV+ D + KG GFVRF
Sbjct: 183 DVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRF 222
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
LW+G L+P M E+++M F G+ A KV+RNK G GY F+ F
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGE-ATAAKVIRNKQNGYSEGYGFIEF 128
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 399 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN--SAIQKGMGFVRF 542
S+W+GDL P +D+ L VF T TA ++ N + +G GF+ F
Sbjct: 81 SLWIGDLQPWMDENYLMNVFG--LTGEATAAKVIRNKQNGYSEGYGFIEF 128
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 50.0 bits (114), Expect = 2e-06
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPD 428
F H+ A A+ LNG+ + G V + T RE ++ F+++VGDLSP+
Sbjct: 100 FVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSS-----HFNIFVGDLSPE 154
Query: 429 VDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVRF 542
V D +LY+ F S ++S A+V+ D + +G GFV F
Sbjct: 155 VTDATLYQSF-SVFSSCSDARVMWDQKTGRSRGFGFVSF 192
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +3
Query: 351 TASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVF-ASKYTSIKTAKVILDNSAIQKGM 527
T + ET N + + +V+VG+L+P+V L+R F A I+ +V D KG
Sbjct: 252 TLNEETPEN--NSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRD-----KGF 304
Query: 528 GFVRF 542
GFVR+
Sbjct: 305 GFVRY 309
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 46.8 bits (106), Expect = 1e-05
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPD 428
F H+ A A+ LNG+ I G V + T RE ++ F+++VGDLSP+
Sbjct: 104 FVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSS-----HFNIFVGDLSPE 158
Query: 429 VDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVRF 542
V D +L+ F S + S A+V+ D + +G GFV F
Sbjct: 159 VTDAALFDSF-SAFNSCSDARVMWDQKTGRSRGFGFVSF 196
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +3
Query: 399 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQ--KGMGFVRF 542
+V+VG+LSP+V L+R+F YT +++ +Q KG GFVR+
Sbjct: 270 TVYVGNLSPEVTQLDLHRLF---YT---LGAGVIEEVRVQRDKGFGFVRY 313
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 44.4 bits (100), Expect = 8e-05
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPD 428
F T EEA A+ K N + G V SR R ++ F ++VG+L D
Sbjct: 158 FVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWD 217
Query: 429 VDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVR 539
VD L R+F S++ + A+V+ D + +G GFV+
Sbjct: 218 VDSGRLERLF-SEHGKVVDARVVSDRETGRSRGFGFVQ 254
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 44.0 bits (99), Expect = 1e-04
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPD 428
F + +EA A+ K N + G V SR RA +E F V+VG+L D
Sbjct: 195 FVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWD 254
Query: 429 VDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFV 536
VD+ L ++F S++ + A+V+ D + +G GFV
Sbjct: 255 VDNGRLEQLF-SEHGKVVEARVVYDRETGRSRGFGFV 290
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 44.0 bits (99), Expect = 1e-04
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPD 428
F H+ A A+ LNG+ + G V + + RE ++ F+++VGDLSP+
Sbjct: 95 FVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTSS-----HFNIFVGDLSPE 149
Query: 429 VDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVRF 542
V D L+ F S Y + A+V+ D + +G GFV F
Sbjct: 150 VTDAMLFTCF-SVYPTCSDARVMWDQKTGRSRGFGFVSF 187
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 399 SVWVGDLSPDVDDYSLYRVFASKYTS-IKTAKVILDNSAIQKGMGFVRF 542
+V+VG+L+P+V L+R F S I+ +V D KG GFVR+
Sbjct: 261 TVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRY 304
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 42.7 bits (96), Expect = 2e-04
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPD 428
F F T++ A+ A L+G + G V +N R A Q +V+V +L
Sbjct: 155 FVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDST--NVYVKNLIET 212
Query: 429 VDDYSLYRVFASKYTSIKTAKVILDNSAIQKGMGFVRF 542
V D L+ +F S+Y ++ + V+ D +G GFV F
Sbjct: 213 VTDDCLHTLF-SQYGTVSSVVVMRDGMGRSRGFGFVNF 249
Score = 31.9 bits (69), Expect = 0.44
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
L++G L P++TE ++ F+ L ++V + RN TG+ YA++ F
Sbjct: 23 LYVGDLSPDVTEKDLIDKFS-LNVPVVSVHLCRNSVTGKSMCYAYINF 69
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +3
Query: 363 ETRA--NMQHEREF-SVWVGDLSPDVDDYSLYRVFA 461
ET+A N QH F S++VGDLSPDV + L F+
Sbjct: 7 ETQALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFS 42
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 399 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQKGMGFVRF 542
+++V +LS +++ L +F Y I +AKV+ + KG GFV F
Sbjct: 305 NLYVKNLSESMNETRLREIFGC-YGQIVSAKVMCHENGRSKGFGFVCF 351
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 41.5 bits (93), Expect = 5e-04
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPD 428
F H+ A A+ LNG+ I G V + T RE ++ F+++VGDLSP+
Sbjct: 104 FVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSS-----HFNIFVGDLSPE 158
Query: 429 VDDYSL---YRVFASKYTSIKTAKVILD-NSAIQKGMGFVRF 542
V D +L + F S + + A+V+ D + +G GFV F
Sbjct: 159 VTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSF 200
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +3
Query: 399 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQ--KGMGFVRF 542
+V+VG+LSP+V L+R+F YT +++ +Q KG GFVR+
Sbjct: 274 TVYVGNLSPEVTQLDLHRLF---YT---LGAGVIEEVRVQRDKGFGFVRY 317
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 39.9 bits (89), Expect = 0.002
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 11/112 (9%)
Frame = +3
Query: 240 RICFCHFQTDEEAIDAMHKLNGKPIPGT-FPVVRFRLNT-ASRETRA---------NMQH 386
R F +F+ E A+ A+ K+NG + V R + T + + +A +M+
Sbjct: 160 RFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKT 219
Query: 387 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQKGMGFVRF 542
+ +++V +L VD+ L +F S++ +I + KV++ ++ I KG+GFV F
Sbjct: 220 RKGMNLYVKNLDDSVDNTKLEELF-SEFGTITSCKVMVHSNGISKGVGFVEF 270
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPV 332
F F T EEA AM K+NGK + G P+
Sbjct: 267 FVEFSTSEEASKAMLKMNGKMV-GNKPI 293
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHERE----------F 398
F +F+ E A A+ K+NG + V + RE + E+E
Sbjct: 273 FVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGA 332
Query: 399 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQKGMGFVRF 542
++++ +L VDD L +F S+Y ++ ++KV+L+ + +G GFV +
Sbjct: 333 NLYLKNLDDSVDDEKLKEMF-SEYGNVTSSKVMLNPQGMSRGFGFVAY 379
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 37.9 bits (84), Expect = 0.007
Identities = 28/98 (28%), Positives = 43/98 (43%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPD 428
F F+ +E A A+ KLNG + V + R + +V+V +L +
Sbjct: 176 FVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKE 235
Query: 429 VDDYSLYRVFASKYTSIKTAKVILDNSAIQKGMGFVRF 542
+ D L + F KY I +A V+ D S + GFV F
Sbjct: 236 ITDDELKKTFG-KYGDISSAVVMKDQSGNSRSFGFVNF 272
Score = 35.9 bits (79), Expect = 0.027
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHERE----------F 398
F +F + E A A+ K+NG + V + RE + E+E
Sbjct: 269 FVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGS 328
Query: 399 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQKGMGFVRF 542
++++ +L V+D L +F S+Y ++ + KV++++ + +G GFV +
Sbjct: 329 NLYLKNLDDSVNDEKLKEMF-SEYGNVTSCKVMMNSQGLSRGFGFVAY 375
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPL-AVKVMRNKFTGEPAGYAFVIF 261
L++G L+P++ ES ++ FN++ P+ ++V R+ T GYA+V F
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVA--PVHNLRVCRD-LTHRSLGYAYVNF 92
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 37.5 bits (83), Expect = 0.009
Identities = 26/99 (26%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPD 428
F ++++E+A A+ LN + G P+ R+N AS++ ++ + ++++G+L PD
Sbjct: 70 FIEYRSEEDADYAIKVLNMIKLHGK-PI---RVNKASQDKKSL---DVGANLFIGNLDPD 122
Query: 429 VDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVRF 542
VD+ LY F++ K++ D ++ +G GF+ +
Sbjct: 123 VDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISY 161
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +1
Query: 76 KSLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFV 255
K+ + + L++G+L+P++ E + F+ G K+MR+ TG G+ F+
Sbjct: 100 KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFI 159
Query: 256 IF 261
+
Sbjct: 160 SY 161
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +3
Query: 399 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQKGMGFVRF 542
SV+VG L D+ + ++ RVF S Y S+ T K++ D S K GFV F
Sbjct: 8 SVYVGGLPYDITEEAVRRVF-SIYGSVLTVKIVNDRSVRGKCYGFVTF 54
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +1
Query: 109 QCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
Q +L++G + + E+ + F+ G+ L V VMR K TG P G+ FV F
Sbjct: 5 QGKLFIGGISWDTDENLLREYFSNFGE-VLQVTVMREKATGRPRGFGFVAF 54
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 36.3 bits (80), Expect = 0.020
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 109 QCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
Q +L++G + E + F G+ A+ VMR+K TG P G+ FVIF
Sbjct: 5 QGKLFVGGISWETDEDKLREHFTNYGEVSQAI-VMRDKLTGRPRGFGFVIF 54
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 36.3 bits (80), Expect = 0.020
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPD 428
F + TDE A A+ KLNG + V ++ R+ + + +V+V +LS
Sbjct: 177 FVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSG--EKVKFTNVYVKNLSES 234
Query: 429 VDDYSLYRVFASKYTSIKTAKVIL-DNSAIQKGMGFVRF 542
+ D L +VF + T+ VI+ D KG GFV F
Sbjct: 235 LSDEELNKVFGE--FGVTTSCVIMRDGEGKSKGFGFVNF 271
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 34.3 bits (75), Expect = 0.082
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 115 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIFR 264
++++G + + TE + +G+ V++MR K +G+ GYAFV FR
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGE-VTEVRIMREKDSGDGKGYAFVTFR 141
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/60 (25%), Positives = 36/60 (60%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIFRRMKKQLTQCTN 297
+++G + ++TE ++A F++ G+ + V ++R+K TG+ G+AF+ + + + N
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEI-VDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDN 96
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +3
Query: 402 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVRF 542
V+VG+LS VDD +L +F S+ + A+VI D +S KG GFV +
Sbjct: 206 VYVGNLSWGVDDMALESLF-SEQGKVVEARVIYDRDSGRSKGFGFVTY 252
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 249 FCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTAS 359
F F T EEA +A+ KLNGK I G ++F L +AS
Sbjct: 240 FVSFATREEAENAITKLNGKEIMGRPITLKFSLRSAS 276
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +1
Query: 115 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
++++G L + T + F + G+ +V +MR++ TG+P G+ F+ F
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSV-IMRDRHTGQPRGFGFITF 67
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +1
Query: 115 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
++++G L + T + F + G+ +V +MR++ TG+P G+ F+ F
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSV-IMRDRHTGQPRGFGFITF 67
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 32.3 bits (70), Expect = 0.33
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +1
Query: 67 EKYKSLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGY 246
EKY L+ P + +++G L ++ E + +G+ V++M+++ +G+ GY
Sbjct: 103 EKYSHLLSLPPHGSE--VFIGGLPRDVGEEDLRDLCEEIGEI-FEVRLMKDRDSGDSKGY 159
Query: 247 AFVIFR 264
AFV F+
Sbjct: 160 AFVAFK 165
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +1
Query: 79 SLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFV 255
S + P A+ +L+ G+L N+ +S +A + P V+V+ N+ TG+ G+AFV
Sbjct: 74 SAVLDPPAAVNTKLYFGNLPYNV-DSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFV 131
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 402 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVRF 542
++VG LSP D L F S + I A V+LD S + +G GFV +
Sbjct: 38 IFVGGLSPSTDVELLKEAFGS-FGKIVDAVVVLDRESGLSRGFGFVTY 84
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 115 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
+L+ G L + + + AF R +A KV+R+K TG+ GY FV F
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMA-KVIRDKRTGKTKGYGFVSF 185
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +1
Query: 112 CQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFV 255
C L++G L+ N+T+S + F + Q ++V+V R+ T GY +V
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQ-VVSVRVCRDAATNTSLGYGYV 92
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 31.1 bits (67), Expect = 0.77
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 402 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SAIQKGMGFVRF 542
+++G LS DD SL FA + + AKVI+D + +G GFV F
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNF 83
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 31.1 bits (67), Expect = 0.77
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 402 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SAIQKGMGFVRF 542
+++G LS DD SL FA + + AKVI+D + +G GFV F
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNF 83
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 31.1 bits (67), Expect = 0.77
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +3
Query: 402 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFV 536
++VG+LS VDD +L +F ++ + A+VI D +S KG GFV
Sbjct: 251 LYVGNLSWGVDDMALENLF-NEQGKVVEARVIYDRDSGRSKGFGFV 295
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 31.1 bits (67), Expect = 0.77
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +3
Query: 402 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFV 536
++VG+LS VDD +L +F ++ + A+VI D +S KG GFV
Sbjct: 259 LYVGNLSWGVDDMALENLF-NEQGKVVEARVIYDRDSGRSKGFGFV 303
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 31.1 bits (67), Expect = 0.77
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 115 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
+L++G + +E + F+R G AV V + K TG+P G+ FV F
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAV-VAKEKVTGKPRGFGFVRF 54
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 115 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIFRRMKKQLTQCT 294
++++G L + F + G+ AV V+ +K TG GY FV F+ + + C
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAV-VITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 295 N 297
N
Sbjct: 82 N 82
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +1
Query: 115 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
++++G L T + + F + G+ +V +M+++ TG+P G+ FV +
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSV-IMKDRKTGQPRGFGFVTY 90
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 115 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
+L++G + + E + F + G AV +MR++ TG G+ F++F
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAV-IMRDRTTGRARGFGFIVF 63
>At1g34110.1 68414.m04230 leucine-rich repeat transmembrane protein
kinase, putative contains similarity to receptor protein
kinase-like protein GI:10177178 from [Arabidopsis
thaliana]
Length = 1045
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = -3
Query: 553 LHYPNLTKPIPFCIAELSNITLAVFMEVYLEANTL*RE*SSTSGLRSPTQTENSLSCCIL 374
L Y +L+ IP + +++++T+ + + + S + L+S + NSL I
Sbjct: 560 LSYNSLSGEIPQELGQVTSLTINLDLSYNTFTGNIPETFSDLTQLQSLDLSSNSLHGDIK 619
Query: 373 ALVSLDAVFSLNLTTGNVPG 314
L SL ++ SLN++ N G
Sbjct: 620 VLGSLTSLASLNISCNNFSG 639
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIFRRMKK 276
LW+GSL P TES + F R G + V ++ G+AF+ +R +++
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDID-RITVYSSR------GFAFIYYRHVEE 65
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 169 AFNRLGQRPLA-VKVMRNKFTGEPAGYAFVIFR 264
+F R G PL + + RN +TGEP G+ FV +R
Sbjct: 66 SFERFG--PLKDIYLPRNYYTGEPRGFGFVKYR 96
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 399 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL----DNSAIQKGMGFVRF 542
+++VG+LSP VD+ L R F ++ I + K++ + Q+ GFV F
Sbjct: 180 NLYVGNLSPKVDENFLLRTF-GRFGPIASVKIMWPRTDEEKRRQRNCGFVSF 230
>At5g02290.2 68418.m00153 protein kinase, putative similar to
protein kinase APK1A [Arabidopsis thaliana]
SWISS-PROT:Q06548
Length = 389
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 571 VHYVAHLHYPNLTKPIPFCIAELSNITLAVFM 476
++Y+ L +PNL K I +C+ E + + FM
Sbjct: 123 INYLGQLDHPNLVKLIGYCLEEEHRLLVYEFM 154
>At5g02290.1 68418.m00152 protein kinase, putative similar to
protein kinase APK1A [Arabidopsis thaliana]
SWISS-PROT:Q06548
Length = 389
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 571 VHYVAHLHYPNLTKPIPFCIAELSNITLAVFM 476
++Y+ L +PNL K I +C+ E + + FM
Sbjct: 123 INYLGQLDHPNLVKLIGYCLEEEHRLLVYEFM 154
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 115 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
+L++G + + E + F+ G AV +MR++ TG G+ F++F
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAV-IMRDRATGRARGFGFIVF 54
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 115 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
+L++G + + E + F+ G AV +MR++ TG G+ F++F
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAV-IMRDRATGRARGFGFIVF 54
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 115 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
+L++G + + E + F+ G AV +MR++ TG G+ F++F
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAV-IMRDRATGRARGFGFIVF 54
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +1
Query: 115 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIFRRMKK 276
+L++ + TE I F + G + + ++K TGE A Y F+ ++++++
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGN-VTEIILPKDKMTGERAAYCFIKYKKVEE 163
>At2g39660.1 68415.m04864 protein kinase, putative similar to
protein kinase gi|166809|gb|AAA18853
Length = 395
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 571 VHYVAHLHYPNLTKPIPFCIAELSNITLAVFME 473
++Y+ L +PNL K I +C+ + + + FM+
Sbjct: 122 INYLGQLSHPNLVKLIGYCLEDEHRLLVYEFMQ 154
>At2g33710.1 68415.m04132 AP2 domain-containing transcription factor
family protein similar to RAP2.6 (GI:17065542)
{Arabidopsis thaliana}
Length = 218
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Frame = +3
Query: 243 ICFCHFQTDEEAIDAMHKLNGKPIPGTF----PVVRFRLNTASRETRANMQHEREFSVWV 410
+C C ++ + D + +L G+PIP + + + + SR+ +R + W
Sbjct: 23 LCCCSTLSESDVSDFVSELTGQPIPSSIDDQSSSLTLQEKSNSRQRNYRGVRQRPWGKWA 82
Query: 411 GDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQ 518
++ D RV+ + + + A + D +A +
Sbjct: 83 AEIR---DPNKAARVWLGTFDTAEEAALAYDKAAFE 115
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 393 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSAIQKGMGFVRF 542
E++ +V L D D+ L +F SK+ ++ +K+I D ++ + GFV F
Sbjct: 6 EYTCFVRGLDQDTDEKDLTDIF-SKFGNVIDSKIIYDRDTGKSRRFGFVTF 55
>At1g69790.1 68414.m08030 protein kinase, putative similar to
protein kinase APK1A [Arabidopsis thaliana]
SWISS-PROT:Q06548
Length = 387
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 571 VHYVAHLHYPNLTKPIPFCI 512
VHY+ LH+ NL K I +C+
Sbjct: 139 VHYLGRLHHMNLVKLIGYCL 158
>At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 473
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 90 FHKTFIFFKLYIATLLALIPIFNATNPTLS 1
F+ FIF L + L A++P+F + P L+
Sbjct: 24 FYSRFIFKALILTVLCAVVPVFLSQTPELA 53
>At3g55450.1 68416.m06158 protein kinase, putative similar to
protein kinase APK1B [Arabidopsis thaliana]
SWISS-PROT:P46573
Length = 389
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 571 VHYVAHLHYPNLTKPIPFCIAELSNITLAVFM 476
++Y+ L +PNL K I +C+ + + + FM
Sbjct: 116 INYLGQLSHPNLVKLIGYCLEDEQRLLVYEFM 147
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 27.9 bits (59), Expect = 7.2
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Frame = +3
Query: 240 RICFCHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNT-ASRETRANMQHERE------F 398
R F ++ E+A + KLNG + G V AS + +Q E +
Sbjct: 118 RFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPY 177
Query: 399 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSAIQKGMGFVRF 542
V+VG+L+ V L +F+ K + + ++ G GFV F
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTF 225
>At1g06490.1 68414.m00688 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1933
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 577 HMVHYVAHLHYPNLTKPIPFCIAELSNITLAVFMEVYL 464
H+V+Y H +PN T I IA I L FM+ +
Sbjct: 714 HVVNYEWHEFFPNATHNIGVIIAIWGPIVLVYFMDTQI 751
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 118 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
L++G + E+ I A F++ G V+V RNK TG+ + F+ F
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVK-RVRVARNKKTGKSKHFGFIQF 108
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 402 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SAIQKGMGFVRF 542
V+VG+LSP D L F S Y ++ A V+ D + +G GFV +
Sbjct: 5 VYVGNLSPTTTDDMLREAF-SGYGNVVDAIVMRDRYTDRSRGFGFVTY 51
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 109 QCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
Q +L++ L + T + + F+ G A+ ++ +K TG+ GY FV F
Sbjct: 74 QRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVIL-DKVTGKSKGYGFVTF 123
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 109 QCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVIF 261
Q +L++ L + T + + F+ G A+ ++ +K TG+ GY FV F
Sbjct: 74 QRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVIL-DKVTGKSKGYGFVTF 123
>At3g09010.1 68416.m01055 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 393
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -3
Query: 571 VHYVAHLHYPNLTKPIPFCIAELSNITLAVFMEVYLEANTL 449
++ ++++H+PNL K I CI E +N + + YLE N+L
Sbjct: 91 INLISNIHHPNLVKLIGCCI-EGNN---RILVYEYLENNSL 127
>At3g01300.1 68416.m00039 protein kinase, putative similar to
protein kinase APK1A [Arabidopsis thaliana]
Swiss-Prot:Q06548
Length = 490
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 571 VHYVAHLHYPNLTKPIPFCIAELSNITLAVFM 476
++Y+ +L +PNL K + +CI + + + FM
Sbjct: 191 INYLGNLLHPNLVKLVGYCIEDDQRLLVYEFM 222
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,382,978
Number of Sequences: 28952
Number of extensions: 351331
Number of successful extensions: 931
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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