Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30506
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          102   2e-22
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              79   4e-15
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                71   7e-13
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 68   5e-12
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   30   1.2  
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              29   2.2  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)                     28   6.6  
SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)                     28   6.6  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     27   8.7  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  102 bits (245), Expect = 2e-22
 Identities = 45/88 (51%), Positives = 65/88 (73%)
 Frame = +2

Query: 245 FHQDMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 424
           F  +MI+G +QAD  VL+++A  GEFE G  + GQTREHA+LA T GVK L++ VNKMD 
Sbjct: 235 FVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHLVILVNKMDD 294

Query: 425 TEPPYSEPRFEEIKKEVSSYIKKIGYNP 508
               ++E R+EEIK +++ ++KK+G+NP
Sbjct: 295 PTVKWNEERYEEIKVKLTPFLKKVGFNP 322



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/40 (42%), Positives = 28/40 (70%)
 Frame = +1

Query: 40  YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 159
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205



 Score = 33.1 bits (72), Expect = 0.18
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 162 GITIDIALWKFETSKYYVTIIDAPGHRDFI 251
           G T+++    F+T   + T++DAPGH+ F+
Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFV 236


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 37/59 (62%), Positives = 45/59 (76%)
 Frame = +2

Query: 245 FHQDMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 421
           F  +MITG +QAD A+L+V A TGEFEAG    GQTREHA+L  +LGV QLIV +NK+D
Sbjct: 26  FIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGVTQLIVAINKLD 84



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +3

Query: 171 IDIALWKFETSKYYVTIIDAPGHRDFI 251
           +D+ L +F+T    +T++DAPGH+DFI
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFI 27


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 31/34 (91%), Positives = 33/34 (97%)
 Frame = +1

Query: 1   VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 102
           VDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 16  VDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = +3

Query: 162 GITIDIALWKFETSKYYVTIIDAPGHRDFIK 254
           GITIDIALWKFET KYYVT+IDAPGHRDFIK
Sbjct: 22  GITIDIALWKFETLKYYVTVIDAPGHRDFIK 52



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +1

Query: 100 MGKGSFKYAWVLDKLKAERE 159
           MGKGSFKYAWVLDKLKAERE
Sbjct: 1   MGKGSFKYAWVLDKLKAERE 20


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = -1

Query: 486  MYEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 334
            +Y+D S    L+S N   L   ++E IL TPT    +    + K C      +   P   
Sbjct: 796  LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855

Query: 333  IPASNSPVPAAT 298
            +   NSP+P+ T
Sbjct: 856  VTNGNSPIPSGT 867


>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +2

Query: 140 N*RLSVSRYHNRYCSLEVRN 199
           N +L +SRYH+RY SLEV N
Sbjct: 867 NPQLVMSRYHSRYVSLEVEN 886


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/77 (23%), Positives = 36/77 (46%)
 Frame = +2

Query: 257 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 436
           M+ G +  D A+L++A              QT EH      + +K +++  NK+D  +  
Sbjct: 81  MLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKES 134

Query: 437 YSEPRFEEIKKEVSSYI 487
            ++ ++++I K V   I
Sbjct: 135 QAKDQYDQILKFVQGTI 151


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +2

Query: 293 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMDSTEPPYSEPRFEEIKK 469
           ++VAA   EF A ++KNG     ++  F  G + QL +G + M+ TE P   P FE++K 
Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424

Query: 470 EVSS 481
              S
Sbjct: 425 RTVS 428


>SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 408

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 559 NMLSPCPSRNGHESDSQWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSY 401
           N LS CP ++     S W+  + L+V  Y+L     + L+ W F       SY
Sbjct: 47  NALSYCPYKSYLNVLSYWLYKSYLNVLSYWLYKSFLNVLSYWLFKSYLNALSY 99


>SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 392

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 559 NMLSPCPSRNGHESDSQWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSY 401
           N LS CP ++     S W+  + L+V  Y+L     + L+ W F       SY
Sbjct: 31  NALSYCPYKSYLNVLSYWLYKSYLNVLSYWLYKSFLNVLSYWLFKSYLNALSY 83


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 162 GITIDIALWKFETSKYYVTIIDAPGHRDF 248
           GI++  ++  F      + I+D PGH+DF
Sbjct: 64  GISVATSVLAFNYRDKKINILDTPGHKDF 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,024,389
Number of Sequences: 59808
Number of extensions: 439703
Number of successful extensions: 1154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)