Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30506
(597 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 150 8e-37
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 150 8e-37
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 150 8e-37
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 150 8e-37
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 99 3e-21
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 83 2e-16
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 45 3e-05
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 44 8e-05
At5g46180.1 68418.m05680 ornithine aminotransferase, putative / ... 31 0.58
At3g20440.1 68416.m02588 glycoside hydrolase family 13 protein s... 29 1.8
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 29 1.8
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 29 1.8
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 29 2.4
At5g39680.1 68418.m04805 pentatricopeptide (PPR) repeat-containi... 29 2.4
At3g01360.1 68416.m00057 expressed protein contains Pfam profile... 29 2.4
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 29 3.1
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 29 3.1
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 28 5.4
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 28 5.4
At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase fa... 28 5.4
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 27 7.2
At5g44785.2 68418.m05490 expressed protein contains Pfam PF05329... 27 9.5
At5g44785.1 68418.m05489 expressed protein contains Pfam PF05329... 27 9.5
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 150 bits (363), Expect = 8e-37
Identities = 71/99 (71%), Positives = 85/99 (85%)
Frame = +2
Query: 245 FHQDMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 424
F ++MITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+
Sbjct: 98 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 157
Query: 425 TEPPYSEPRFEEIKKEVSSYIKKIGYNPLAVAFVPISGW 541
T P YS+ R++EI KEVSSY+KK+GYNP + FVPISG+
Sbjct: 158 TTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPFVPISGF 196
Score = 101 bits (241), Expect = 5e-22
Identities = 47/53 (88%), Positives = 48/53 (90%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 159
VDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERE
Sbjct: 16 VDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 68
Score = 67.3 bits (157), Expect = 7e-12
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = +3
Query: 162 GITIDIALWKFETSKYYVTIIDAPGHRDFIK 254
GITIDIALWKFET+KYY T+IDAPGHRDFIK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIK 100
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 150 bits (363), Expect = 8e-37
Identities = 71/99 (71%), Positives = 85/99 (85%)
Frame = +2
Query: 245 FHQDMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 424
F ++MITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+
Sbjct: 98 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 157
Query: 425 TEPPYSEPRFEEIKKEVSSYIKKIGYNPLAVAFVPISGW 541
T P YS+ R++EI KEVSSY+KK+GYNP + FVPISG+
Sbjct: 158 TTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPFVPISGF 196
Score = 101 bits (241), Expect = 5e-22
Identities = 47/53 (88%), Positives = 48/53 (90%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 159
VDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERE
Sbjct: 16 VDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 68
Score = 67.3 bits (157), Expect = 7e-12
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = +3
Query: 162 GITIDIALWKFETSKYYVTIIDAPGHRDFIK 254
GITIDIALWKFET+KYY T+IDAPGHRDFIK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIK 100
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 150 bits (363), Expect = 8e-37
Identities = 71/99 (71%), Positives = 85/99 (85%)
Frame = +2
Query: 245 FHQDMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 424
F ++MITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+
Sbjct: 98 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 157
Query: 425 TEPPYSEPRFEEIKKEVSSYIKKIGYNPLAVAFVPISGW 541
T P YS+ R++EI KEVSSY+KK+GYNP + FVPISG+
Sbjct: 158 TTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPFVPISGF 196
Score = 101 bits (241), Expect = 5e-22
Identities = 47/53 (88%), Positives = 48/53 (90%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 159
VDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERE
Sbjct: 16 VDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 68
Score = 67.3 bits (157), Expect = 7e-12
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = +3
Query: 162 GITIDIALWKFETSKYYVTIIDAPGHRDFIK 254
GITIDIALWKFET+KYY T+IDAPGHRDFIK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIK 100
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 150 bits (363), Expect = 8e-37
Identities = 71/99 (71%), Positives = 85/99 (85%)
Frame = +2
Query: 245 FHQDMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 424
F ++MITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+
Sbjct: 98 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 157
Query: 425 TEPPYSEPRFEEIKKEVSSYIKKIGYNPLAVAFVPISGW 541
T P YS+ R++EI KEVSSY+KK+GYNP + FVPISG+
Sbjct: 158 TTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPFVPISGF 196
Score = 101 bits (241), Expect = 5e-22
Identities = 47/53 (88%), Positives = 48/53 (90%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 159
VDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERE
Sbjct: 16 VDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 68
Score = 67.3 bits (157), Expect = 7e-12
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = +3
Query: 162 GITIDIALWKFETSKYYVTIIDAPGHRDFIK 254
GITIDIALWKFET+KYY T+IDAPGHRDFIK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIK 100
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 98.7 bits (235), Expect = 3e-21
Identities = 49/96 (51%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Frame = +2
Query: 254 DMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 433
+MI+G SQAD VL+++A GEFE G + GQTREH LA TLGV +LIV VNKMD
Sbjct: 195 NMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLIVVVNKMDDPTV 254
Query: 434 PYSEPRFEEIKKEVSSYIKKIGYNPLA-VAFVPISG 538
+S+ R++EI++++ ++K GYN V F+PISG
Sbjct: 255 NWSKERYDEIEQKMVPFLKASGYNTKKDVVFLPISG 290
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/52 (40%), Positives = 36/52 (69%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 156
VD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D + ER
Sbjct: 110 VDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTNEEER 161
Score = 32.7 bits (71), Expect = 0.19
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 162 GITIDIALWKFETSKYYVTIIDAPGHRDFI 251
G T+++ FET TI+DAPGH+ ++
Sbjct: 164 GKTVEVGRAHFETESTRFTILDAPGHKSYV 193
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 82.6 bits (195), Expect = 2e-16
Identities = 43/110 (39%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Frame = +2
Query: 245 FHQDMITGTSQADCAVLIVAAGTGEFEAGISK-NGQTREHALLAFTLGVKQLIVGVNKMD 421
F +MI G +QAD A+L++ A G FEAG GQTREHA + GV+Q+IV +NKMD
Sbjct: 330 FVPNMIAGATQADAAILVIDASVGAFEAGFDNLKGQTREHARVLRGFGVEQVIVAINKMD 389
Query: 422 STEPPYSEPRFEEIKKEVSSYIKKIGYNPLAVAFVPISGWARRQHVGSLS 571
YS+ RF+ IK+ V S+++ + ++ ++P+S + V + S
Sbjct: 390 IV--GYSKERFDLIKQHVGSFLQSCRFKDSSLTWIPLSAMENQNLVAAPS 437
Score = 64.9 bits (151), Expect = 4e-11
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 159
VDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+ ERE
Sbjct: 248 VDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 300
Score = 37.9 bits (84), Expect = 0.005
Identities = 12/30 (40%), Positives = 24/30 (80%)
Frame = +3
Query: 162 GITIDIALWKFETSKYYVTIIDAPGHRDFI 251
GIT+ +A+ F + +++V ++D+PGH+DF+
Sbjct: 302 GITMTVAVAYFNSKRHHVVLLDSPGHKDFV 331
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 45.2 bits (102), Expect = 3e-05
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +2
Query: 218 HH*CSWTQRFHQDMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 397
H C + ++MITG +Q D A+L+V+ G QT+EH LLA +GV +
Sbjct: 146 HVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHILLAKQVGVPDM 198
Query: 398 IVGVNKMDSTEPPYSEPRFE-EIKKEVSSY 484
+V +NK D + E E+++ +SSY
Sbjct: 199 VVFLNKEDQVDDAELLELVELEVRELLSSY 228
Score = 34.3 bits (75), Expect = 0.063
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 162 GITIDIALWKFETSKYYVTIIDAPGHRDFIK 254
GITI+ A ++ET + +D PGH D++K
Sbjct: 127 GITINTATVEYETENRHYAHVDCPGHADYVK 157
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 44.0 bits (99), Expect = 8e-05
Identities = 29/91 (31%), Positives = 45/91 (49%)
Frame = +2
Query: 218 HH*CSWTQRFHQDMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 397
H C + ++MITG +Q D +L+V+ G QT+EH LLA +GV L
Sbjct: 134 HVDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMP-------QTKEHILLARQVGVPSL 186
Query: 398 IVGVNKMDSTEPPYSEPRFEEIKKEVSSYIK 490
+ +NK+D + P E +E+ S+ K
Sbjct: 187 VCFLNKVDVVDDPELLELVEMELRELLSFYK 217
Score = 34.7 bits (76), Expect = 0.047
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 162 GITIDIALWKFETSKYYVTIIDAPGHRDFIK 254
GITI A ++ET+K + +D PGH D++K
Sbjct: 115 GITIATAHVEYETAKRHYAHVDCPGHADYVK 145
>At5g46180.1 68418.m05680 ornithine aminotransferase, putative /
ornithine--oxo-acid aminotransferase, putative similar
to SP|Q92413 Ornithine aminotransferase (EC 2.6.1.13)
(Ornithine--oxo-acid aminotransferase) [Aspergillus
nidulans] {Emericella nidulans}; contains Pfam profile
PF00202: aminotransferase, class III
Length = 475
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 377 TLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPLAVAFVPISG 538
T GV++ G+ + +S PP S R E++ E S++ Y+P+ V F +G
Sbjct: 18 TAGVRRSYGGLPQSNSKSPPSSSQRLMELESEFSAH----NYHPVPVVFSRANG 67
>At3g20440.1 68416.m02588 glycoside hydrolase family 13 protein
similar to 1,4-alpha-glucan branching enzyme [Solanum
tuberosum] GI:1621012, 1,4-alpha-glucan branching enzyme
(EC 2.4.1.18) from [Homo sapiens] SP|Q04446, {Solanum
tuberosum} SP|P30924; contains Pfam profiles: PF00128
Alpha amylase catalytic domain, PF02922 Isoamylase
N-terminal domain
Length = 777
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +2
Query: 440 SEPR---FEEIKKEVSSYIKKIGYNPLAVAFVP 529
SEP+ FEE K+V ++K+ GYN + + VP
Sbjct: 257 SEPKVSTFEEFTKKVLPHVKRAGYNAIQLIGVP 289
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +3
Query: 162 GITIDIALWKFETSKYYVTIIDAPGHRDF 248
GITI A Y V IID PGH DF
Sbjct: 118 GITIQSAATYCTWKDYKVNIIDTPGHVDF 146
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +3
Query: 162 GITIDIALWKFETSKYYVTIIDAPGHRDF 248
GITI A Y V IID PGH DF
Sbjct: 118 GITIQSAATYCTWKDYKVNIIDTPGHVDF 146
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 195 ETSKYYVTIIDAPGHRDFIKT*SQEPLRLIALCSS*LPVPVNSKLVSLRTV 347
E S Y + +ID PGH DF S E R ++ C L V ++ V +TV
Sbjct: 131 EASGYLLNLIDTPGHVDF----SYEVSRSLSACQGALLVVDAAQGVQAQTV 177
>At5g39680.1 68418.m04805 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 710
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 467 KEVSSYIKKIGYNP-LAVAFVPISGWARRQHVGSLSTKIALVQG 595
KEV S IK +GY+P +A AF + R ++ S K+A+ G
Sbjct: 608 KEVMSKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYG 651
>At3g01360.1 68416.m00057 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 319
Score = 29.1 bits (62), Expect = 2.4
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +2
Query: 227 CSWTQRFHQDMITGTSQADCAV-LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 403
C +H+ T Q +C + L+V TG F +KNG R+ LG + +
Sbjct: 228 CKGHGDYHRAKAIATLQFNCHLALMVVVATGLFSVIANKNGYLRQDHSKYRPLGAELENL 287
Query: 404 GVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 505
+DS E +E+++E S+ K++G N
Sbjct: 288 STFTLDSDEE-------DEVREE-SNVAKEVGLN 313
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +3
Query: 162 GITIDIAL----WKFETSKYYVTIIDAPGHRDFIKT*SQEPLRLIALCSS*LPVPVNSKL 329
GITI + + +E + + + +ID PGH DF S E R +A C L V S+
Sbjct: 133 GITIKLQAARMRYVYEDTPFCLNLIDTPGHVDF----SYEVSRSLAACEGALLVVDASQG 188
Query: 330 VSLRTV 347
V +T+
Sbjct: 189 VEAQTL 194
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 162 GITIDIALWKFETSKYYVTIIDAPGHRDF 248
GITI A K+ + IID PGH DF
Sbjct: 146 GITITSAATTTFWDKHRINIIDTPGHVDF 174
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +2
Query: 257 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 436
M+ G + D A+L++AA QT EH + +K +I+ NK+D
Sbjct: 144 MLNGAAIVDGALLLIAANES------CPQPQTAEHLASVDMMRLKHIIILQNKIDLINEK 197
Query: 437 YSEPRFEEIKKEVSS 481
+ + E I+K +++
Sbjct: 198 AATEQHEAIQKFITN 212
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +2
Query: 257 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 436
M+ G + D A+L++AA QT EH + +K +I+ NK+D
Sbjct: 144 MLNGAAIVDGALLLIAANES------CPQPQTAEHLASVDMMRLKHIIILQNKIDLINEK 197
Query: 437 YSEPRFEEIKKEVSS 481
+ + E I+K +++
Sbjct: 198 AATEQHEAIQKFITN 212
>At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|Q9Y2Q0, SP|O43520], Mus musculus [SP|P98200,
SP|P70704], {Bos taurus} SP|Q29449; contains InterPro
accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1184
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +2
Query: 323 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 481
E+G +TR+H G++ LI+ ++D E R E K VS+
Sbjct: 629 ESGRKYEKETRDHVNEYADAGLRTLILAYRELDENEYEVFTERISEAKNSVSA 681
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/75 (25%), Positives = 37/75 (49%)
Frame = +2
Query: 257 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 436
M+ G + D A+LI+AA QT EH + +K +I+ NK+D +
Sbjct: 136 MLNGAAIMDGALLIIAANE------TCPQPQTAEHLASVDMMHLKDIIIIQNKIDLIQEN 189
Query: 437 YSEPRFEEIKKEVSS 481
+ + E+I++ +++
Sbjct: 190 EAIKQHEDIQRFITN 204
>At5g44785.2 68418.m05490 expressed protein contains Pfam PF05329:
Protein of unknown function (DUF731)
Length = 442
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 422 STEPPYSEPRFEEIKKEVSSYIKKIGYNPLAVAFVPIS 535
+TE + P+ E K E+S++I IG+ V F P S
Sbjct: 63 ATEKESTPPKKIEYKPEISNWINLIGFVEQPVQFGPCS 100
>At5g44785.1 68418.m05489 expressed protein contains Pfam PF05329:
Protein of unknown function (DUF731)
Length = 440
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 422 STEPPYSEPRFEEIKKEVSSYIKKIGYNPLAVAFVPIS 535
+TE + P+ E K E+S++I IG+ V F P S
Sbjct: 63 ATEKESTPPKKIEYKPEISNWINLIGFVEQPVQFGPCS 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,196,269
Number of Sequences: 28952
Number of extensions: 303170
Number of successful extensions: 883
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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