Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30505
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 101 2e-22
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 98 3e-21
Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 29 2.4
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 29 2.4
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 29 2.4
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 27 5.6
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 27 5.6
U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical pr... 27 5.6
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 101 bits (243), Expect = 2e-22
Identities = 45/63 (71%), Positives = 57/63 (90%)
Frame = +1
Query: 64 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 243
M S ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60
Query: 244 TNI 252
T++
Sbjct: 61 TSV 63
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 366 SDDDMGFGLFD 398
SDDDMGFGLFD
Sbjct: 101 SDDDMGFGLFD 111
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 98.3 bits (234), Expect = 3e-21
Identities = 44/63 (69%), Positives = 56/63 (88%)
Frame = +1
Query: 64 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 243
M S ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60
Query: 244 TNI 252
T++
Sbjct: 61 TSV 63
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 366 SDDDMGFGLFD 398
SDDDMGFGLFD
Sbjct: 101 SDDDMGFGLFD 111
>Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical
protein C01G10.7 protein.
Length = 324
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 52 SKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPY 189
S KM+ K + S ++ ++D VA+T + + + AAA+D PY
Sbjct: 34 SNQKMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 366 SDDDMGFGLFD 398
SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 366 SDDDMGFGLFD 398
SDDDMGFGLFD
Sbjct: 97 SDDDMGFGLFD 107
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 366 SDDDMGFGLFD 398
SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 167 AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 57
A M EIFSPV++T+ R + S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 167 AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 57
A M EIFSPV++T+ R + S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830
>U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical
protein B0432.7 protein.
Length = 621
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 88 CVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINV 231
C ++ L + DDD +T + + +L+ V PG+ A G NV
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNV 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,877,635
Number of Sequences: 27780
Number of extensions: 153731
Number of successful extensions: 368
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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