Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30505
(491 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 77 5e-15
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 77 5e-15
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative 77 6e-15
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 77 9e-15
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 77 9e-15
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 76 1e-14
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co... 38 0.004
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 28 3.9
At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI, chlor... 27 5.2
At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative... 27 6.9
At1g29120.2 68414.m03565 expressed protein 27 9.1
At1g29120.1 68414.m03564 expressed protein 27 9.1
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 77.4 bits (182), Expect = 5e-15
Identities = 34/64 (53%), Positives = 47/64 (73%)
Frame = +1
Query: 64 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 243
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 244 TNIG 255
N+G
Sbjct: 61 MNVG 64
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 77.4 bits (182), Expect = 5e-15
Identities = 34/64 (53%), Positives = 47/64 (73%)
Frame = +1
Query: 64 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 243
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 244 TNIG 255
N+G
Sbjct: 61 MNVG 64
>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
Length = 111
Score = 77.0 bits (181), Expect = 6e-15
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +1
Query: 67 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 246
+S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK E N+ DLI
Sbjct: 1 MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60
Query: 247 NIG 255
N+G
Sbjct: 61 NVG 63
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 76.6 bits (180), Expect = 9e-15
Identities = 34/64 (53%), Positives = 46/64 (71%)
Frame = +1
Query: 64 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 243
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 244 TNIG 255
N+G
Sbjct: 61 MNVG 64
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 76.6 bits (180), Expect = 9e-15
Identities = 34/64 (53%), Positives = 46/64 (71%)
Frame = +1
Query: 64 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 243
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 244 TNIG 255
N+G
Sbjct: 61 MNVG 64
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 113
Score = 76.2 bits (179), Expect = 1e-14
Identities = 34/64 (53%), Positives = 46/64 (71%)
Frame = +1
Query: 64 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 243
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60
Query: 244 TNIG 255
N+G
Sbjct: 61 MNVG 64
>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
contains weak similarity to Swiss-Prot:52855 60S acidic
ribosomal protein P1 (L12) [Zea mays]
Length = 46
Score = 37.9 bits (84), Expect = 0.004
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +1
Query: 67 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGL 201
++ ELAC Y+AL+L D VT +ST++K A +++E YWP L
Sbjct: 1 MATGELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 215 KALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 108
+ +N P + S TAA KM +I SP+T +S R
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSSGEIR 317
>At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative similar to SP|P161127 from Arabidopsis
thaliana, SP|P93162 from Glycine max, SP|O22436 from
Nicotiana tabacum; non-consensus AA donor splice site at
exon 1, TG acceptor splice site at exon 2
Length = 418
Score = 27.5 bits (58), Expect = 5.2
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 61 KMVSKAELACVYSALILVDDDVAVTGEKIS---TILKAAAVDVEPYWPGLFAKALEGI 225
K+ EL+ + + + +VD + T +++ I KA V+ + PGL AKA GI
Sbjct: 158 KVQKGEELSVIETKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 215
>At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative
similar to glucose-6-phosphate isomerase [Spinacia
oleracea] GI:3413511; contains Pfam profile PF00342:
glucose-6-phosphate isomerase
Length = 613
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 196 GLFAKALEGINVRDLITNIGL 258
GL AL+GINVR+++T L
Sbjct: 316 GLLPAALQGINVREMLTGAAL 336
>At1g29120.2 68414.m03565 expressed protein
Length = 455
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 43 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 186
LA S + S+ +A +YSA + DVAV+ S +L+ +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223
>At1g29120.1 68414.m03564 expressed protein
Length = 455
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 43 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 186
LA S + S+ +A +YSA + DVAV+ S +L+ +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,444,380
Number of Sequences: 28952
Number of extensions: 147926
Number of successful extensions: 369
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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