Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30504
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    28   1.4  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   3.2  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    27   3.2  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    27   3.2  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   3.2  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    26   5.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.6  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.6  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   7.4  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    25   7.4  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   7.4  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.7  

>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 122 SRDSTSVLQQMSTLIKSRKERNLPLDNLLALIIH 223
           S DS S+ Q ++  +  R+  +LP D L +L IH
Sbjct: 635 SSDSESLSQSLNMAVDFRQSSSLPADKLSSLDIH 668


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = +3

Query: 378 SKNIEATKGNSIDEDKFA-----EIQLVNKDKRDRNRARIPRPVTAASRDLVDTDRP 533
           SKNIE T  N  ++ K       +  L +K+  D++   +     +  R  ++TD+P
Sbjct: 36  SKNIETTSSNGAEDIKIQRDVGDDKDLDDKEANDKSSKGLEEESDSKDRKTIETDQP 92


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 399 KGNSIDEDKFAEIQLVNKDKRDRNRARI 482
           +GNSI    F E+ L +  + DRN AR+
Sbjct: 370 EGNSIGAVNFPEVSLRSLTEADRNAARV 397


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 381 KNIEATKGNSIDEDKFAEIQLVNKDKRDRNRARI 482
           K IEA +    DE++  + +L+ K+K+++ R R+
Sbjct: 121 KRIEAERQRLKDEEERRKKELMEKEKKEKERIRL 154


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 370 EISQKTLKRLKEIALMRINLQKYN 441
           +I QK LK ++ I L++ NLQ YN
Sbjct: 776 KIFQKRLKDIQAIKLLQANLQVYN 799


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -3

Query: 198 SKGKLRSLRDFINVLICCKTLVESRLAPK 112
           SK KL+ L+   ++L+   T++ESRL+P+
Sbjct: 892 SKKKLQRLQFKGSMLVMFSTMIESRLSPQ 920


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +2

Query: 104 LQNLGASRDSTSVLQQMSTLIKSRKERNLPLDNLLALIIHIYSLGGTEVTSQKLMN 271
           LQ++ + + +  ++  M   I    +R   L NLL  ++H+   GG+ V  + L++
Sbjct: 471 LQDIKSGKGNPEIVLNMDYAISY--DRYFLLKNLLKFVLHLIQSGGSVVELRNLID 524


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 268  EQDLIEALSVAMFEDHKSLFPQVEGHIVTPEEC 366
            +++++EAL   + E  + L  QVE  I  P+ C
Sbjct: 1017 DKEIVEALETRLLEIVEELKNQVEEKIEVPQRC 1049


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 616 ISCLVKMFKPLLSKSLIPSFLC 551
           I+  + MF PL+S ++I +F+C
Sbjct: 140 ITTFIDMFGPLMSVAIITAFVC 161


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 346 IVTPEECDEISQKTLKRLKEIALMRINLQK 435
           +V P  CDE++QKT   ++EI   RI LQ+
Sbjct: 8   LVWPFPCDEMNQKTPSTVEEI---RIALQE 34


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +2

Query: 20  QLALAVVQTLKSPRRAQLELLASLEKQVLQNLGASRDSTSVLQQMSTLIKSRKERNLPLD 199
           +L   V+ ++K    +   L  SL    + N+G      +V   +  L+ S    N+   
Sbjct: 102 ELMKLVINSIKKDLLSHDSLQNSLALHTIANIGGRELCETVYYDIYKLLMSASNENIVRQ 161

Query: 200 NLLALIIHIY 229
                ++HIY
Sbjct: 162 KSALALLHIY 171


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +1

Query: 205 ARVNHSHILSRRY*SHISKTHEQDLIEALSVAMFEDHKSLFPQVE 339
           +++  +  L +R+ S + +T    L+   SV+++ED  SLFP+ E
Sbjct: 83  SKITKTRSLLKRFGSCLDETSTIVLLNQ-SVSLWEDCYSLFPKTE 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,143
Number of Sequences: 5004
Number of extensions: 55357
Number of successful extensions: 157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)