Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30504
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0766 - 21354494-21354772,21355094-21355247,21355340-213555...    31   0.62 
06_03_0253 + 18753901-18754278,18754873-18754968,18755167-187553...    31   1.1  
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591...    28   5.8  

>07_03_0766 -
           21354494-21354772,21355094-21355247,21355340-21355577,
           21355659-21355866,21356148-21356275,21356384-21356521,
           21357234-21358080
          Length = 663

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 16/75 (21%), Positives = 34/75 (45%)
 Frame = +1

Query: 277 LIEALSVAMFEDHKSLFPQVEGHIVTPEECDEISQKTLKRLKEIALMRINLQKYNSLIKT 456
           ++ A+S+ ++   K        H   P+  ++  +     L  +A +++    +N  +K 
Sbjct: 303 IVAAVSILLWNIRKKRRRGKAEHFTGPDAAEDF-ESVKSTLLSLASLQVATDNFNESMKL 361

Query: 457 SETGIGHEYRGLLLQ 501
            E G G  Y+GLL +
Sbjct: 362 GEGGFGAVYKGLLFR 376


>06_03_0253 +
           18753901-18754278,18754873-18754968,18755167-18755376,
           18756028-18756093,18756379-18756576,18756616-18756810,
           18756968-18757014,18757147-18757234,18757331-18757681,
           18758593-18759123
          Length = 719

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 15  YYSWH*PSYKR*SRRDELNWNSWRA*RNRSFRIW 116
           Y+    PSYKR    D  +W+SW A  N   + W
Sbjct: 314 YFIVQTPSYKRFDATDSRDWHSWSAQTNWEQKFW 347


>04_04_1445 -
           33658355-33658417,33658536-33658669,33659056-33659116,
           33659197-33659356,33660032-33660081,33662237-33662290,
           33662630-33662704,33662821-33662949,33663065-33663152,
           33663266-33663372,33663513-33663561,33663657-33663760,
           33663941-33663980,33664409-33664659,33664674-33664686,
           33665846-33666355,33666437-33667657,33667973-33668221,
           33668305-33668531
          Length = 1194

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +2

Query: 149 QMSTLIKSRKERNLPLDNLLALIIHIYSLGGTEVTSQKLMNRI 277
           + ST + +RK++NL +D++   +++ + L   +   Q L+N I
Sbjct: 297 EKSTYLVTRKQKNLHVDSVFTSLLNEFDLKTPDTIIQSLVNGI 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,280,407
Number of Sequences: 37544
Number of extensions: 337523
Number of successful extensions: 880
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)