Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30504
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55231| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.48 
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 30   1.5  
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   29   2.6  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        29   3.4  
SB_9658| Best HMM Match : Exo_endo_phos (HMM E-Value=1.1)              29   3.4  
SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)                    29   3.4  
SB_16491| Best HMM Match : MutS_V (HMM E-Value=8.2e-11)                29   3.4  
SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_33982| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08)                 28   7.8  

>SB_55231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 134 WSLGWHPNSEGPVSLSSPGVPIELV 60
           W  GW P  EGP+    P +PIE++
Sbjct: 68  WKFGWMPTPEGPLKTELPPLPIEIL 92


>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +2

Query: 29  LAVVQTLKSPRRAQLELLAS--LEKQVLQNLGASRDSTSVLQQMSTLIKSRKERNLPLDN 202
           L  +Q+LK P +  ++L     LE   L+ LGA+R        M  L + + +R L L+N
Sbjct: 60  LTAIQSLKLPDKKLIDLYEQIVLELIELRELGAARSLLRQTDPMIMLKQQQADRYLHLEN 119

Query: 203 LLA 211
           +LA
Sbjct: 120 MLA 122


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +3

Query: 513 LVDTDRPELTDLRHRNEGIKDLLRSGLNI 599
           +   ++PEL D+  ++ GIKD +++G ++
Sbjct: 198 IFSAEKPELVDVEFKSHGIKDFIKTGFSL 226


>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +3

Query: 378 SKNIEATKGNSIDEDKFAEIQLVNKDKRDRNRARIPRPVTAASRDL-VDTDRPELTDLRH 554
           ++N + TK N   +DK  E +   K+ +  NR   P P T A+R L  +T      D  H
Sbjct: 514 NENKDKTKEN---KDKTKENKNKTKENKTANRPLTPLPATTANRLLPPETSNDGNFDTLH 570

Query: 555 RNEGIKDLLRSGLNILTRQEIS 620
                K+++R    +  R  +S
Sbjct: 571 EEHFEKEVVRKRWKVKRRNPMS 592


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +3

Query: 372 DFSKNIEATKGNSIDEDKFAEIQLVNKDKRDRNRARIPRPVTAASRDLVDTDRPELTDLR 551
           +FS N EA    +  E K  E Q   +D+R++++ R P P  A   ++  + RP    + 
Sbjct: 98  NFSSNSEADAFKTQIEIKLQEKQKRRQDRRNQHKNREPAPPPALGGNVELSGRPASGTMT 157

Query: 552 H 554
           H
Sbjct: 158 H 158


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/69 (23%), Positives = 33/69 (47%)
 Frame = +1

Query: 268  EQDLIEALSVAMFEDHKSLFPQVEGHIVTPEECDEISQKTLKRLKEIALMRINLQKYNSL 447
            +QD +EAL+V + ++H+ +    E       + +E+ QK   +   I +  I +Q+  S+
Sbjct: 996  QQDKLEALNVELTKEHEYVEELRENRRKLEAKINELEQKLASQADIIPMQPIQIQQVESV 1055

Query: 448  IKTSETGIG 474
                +   G
Sbjct: 1056 QSAPDMDFG 1064


>SB_9658| Best HMM Match : Exo_endo_phos (HMM E-Value=1.1)
          Length = 277

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 209 RADYPKANCVLYGILLMYSSVAKH 138
           R D+ + NC L G+LL+   VA H
Sbjct: 34  RRDFTRPNCYLVGLLLLCGDVASH 57


>SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 792

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 209 RADYPKANCVLYGILLMYSSVAKH 138
           R D+ + NC L G+LL+   VA H
Sbjct: 61  RRDFTRPNCYLVGLLLLCGDVASH 84


>SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)
          Length = 1354

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 209 RADYPKANCVLYGILLMYSSVAKH 138
           R D+ + NC L G+LL+   VA H
Sbjct: 283 RRDFTRPNCYLVGLLLLCGDVASH 306



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 209 RADYPKANCVLYGILLMYSSVAKH 138
           R D+ + NC L G+LL+   VA H
Sbjct: 479 RRDFTRPNCYLVGLLLLCGDVASH 502


>SB_16491| Best HMM Match : MutS_V (HMM E-Value=8.2e-11)
          Length = 877

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 209 RADYPKANCVLYGILLMYSSVAKH 138
           R D+ + NC L G+LL+   VA H
Sbjct: 497 RRDFTRPNCYLVGLLLLCGDVASH 520


>SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = -2

Query: 466 LSRLSLLTSCISANLSSSML------FPLVASMFFEKSHHIPPVLLYALQLEEISFCDLR 305
           L RL L+ +   ANL+  +L      FP + + F+  S  +   L    QL++   CD  
Sbjct: 764 LPRLELMAALAGANLAEYLLNSLQKNFPDLQAFFWSDSQIVLNWLHSNKQLQQFVECDCP 823

Query: 304 TWQ 296
           TW+
Sbjct: 824 TWE 826


>SB_33982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 209 RADYPKANCVLYGILLMYSSVAKH 138
           R D+ ++NC   G+LL+   VA H
Sbjct: 176 RRDFTRSNCYFVGLLLLCGDVASH 199


>SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08)
          Length = 1158

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/76 (28%), Positives = 37/76 (48%)
 Frame = +2

Query: 11   GILQLALAVVQTLKSPRRAQLELLASLEKQVLQNLGASRDSTSVLQQMSTLIKSRKERNL 190
            GILQ +  VVQ  K   +A   ++ + ++ V  + G  + S  V+Q M   ++ R  R  
Sbjct: 827  GILQASKGVVQASKGVVQASKGVVQASKRVVQASKGVVQASVGVVQAM-LFVRKRALRTK 885

Query: 191  PLDNLLALIIHIYSLG 238
                L++L I   +LG
Sbjct: 886  TNTLLVSLAISDLNLG 901


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,328,782
Number of Sequences: 59808
Number of extensions: 409754
Number of successful extensions: 1028
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)