Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30504
(662 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084197-47|AAM44393.2| 377|Caenorhabditis elegans Hypothetical... 31 0.55
U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical pr... 31 0.96
AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical ... 29 2.2
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ... 29 2.2
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ... 29 2.2
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ... 29 2.2
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ... 29 2.2
Z82058-2|CAB04863.1| 224|Caenorhabditis elegans Hypothetical pr... 27 9.0
AL033508-4|CAE45091.1| 430|Caenorhabditis elegans Hypothetical ... 27 9.0
>AC084197-47|AAM44393.2| 377|Caenorhabditis elegans Hypothetical
protein Y73B6BL.37 protein.
Length = 377
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -1
Query: 164 LMYSSVAKH*WSLGWHP--NSEGPVSLSSPGVPIELVSATSTFVRRLMPAVVC 12
L +++VAKH W+ P + V+LS P +P+ AT F+R +V C
Sbjct: 319 LGHANVAKHLWNNIVQPVGSKNHIVNLSDPTIPLNCPDATCPFIRTTKNSVDC 371
>U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical
protein T20F5.4 protein.
Length = 333
Score = 30.7 bits (66), Expect = 0.96
Identities = 22/85 (25%), Positives = 40/85 (47%)
Frame = +1
Query: 211 VNHSHILSRRY*SHISKTHEQDLIEALSVAMFEDHKSLFPQVEGHIVTPEECDEISQKTL 390
+NH L RY + S E D++ A + ++ +S P + P D++ Q
Sbjct: 3 MNHDDRLRNRYEACRSGMQELDMLRAKHTLLIQNLRSRLP------IIPGSLDDV-QTRE 55
Query: 391 KRLKEIALMRINLQKYNSLIKTSET 465
K+ +++ L R +LQ +S I + T
Sbjct: 56 KKTRDVFLDRFSLQSVDSGISSQNT 80
>AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical
protein F33H12.6 protein.
Length = 1360
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 391 KRLKEIALMRINLQKYNSLIKTSETGIG---HEYRGLLLQLVVTSWTRIDQN 537
KR E RI + Y S + +G+ H R L Q V SW +I+QN
Sbjct: 291 KRPSEKKQGRITQKMYYSYLLMERSGVFNPLHHGRALFQQFAVDSWVKIEQN 342
>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
protein ZK250.9 protein.
Length = 1466
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 391 KRLKEIALMRINLQKYNSLIKTSETGIG---HEYRGLLLQLVVTSWTRIDQN 537
KR E RI + Y S + +G+ H R L Q V SW +I+QN
Sbjct: 397 KRPSEKKQGRITQKMYYSYLLMERSGVFNPLHHGRALFQQFAVDSWVKIEQN 448
>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
protein Y16E11A.2 protein.
Length = 1466
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 391 KRLKEIALMRINLQKYNSLIKTSETGIG---HEYRGLLLQLVVTSWTRIDQN 537
KR E RI + Y S + +G+ H R L Q V SW +I+QN
Sbjct: 397 KRPSEKKQGRITQKMYYSYLLMERSGVFNPLHHGRALFQQFAVDSWVKIEQN 448
>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
protein Y46B2A.2 protein.
Length = 1365
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 391 KRLKEIALMRINLQKYNSLIKTSETGIG---HEYRGLLLQLVVTSWTRIDQN 537
KR E RI + Y S + +G+ H R L Q V SW +I+QN
Sbjct: 307 KRPSEKKQGRITQKMYYSYLLMERSGVFNPLHHGRALFQQFAVDSWVKIEQN 358
>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
protein F59H6.5 protein.
Length = 1486
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 391 KRLKEIALMRINLQKYNSLIKTSETGIG---HEYRGLLLQLVVTSWTRIDQN 537
KR E RI + Y S + +G+ H R L Q V SW +I+QN
Sbjct: 397 KRPSEKKQGRITQKMYYSYLLMERSGVFNPLHHGRALFQQFAVDSWVKIEQN 448
>Z82058-2|CAB04863.1| 224|Caenorhabditis elegans Hypothetical
protein T27C5.2 protein.
Length = 224
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = -2
Query: 439 CISANLSSSMLFPLV---ASMFFEKSHHIPPVLLYALQLEEISFCDLRTWQH*EPQLDPV 269
CIS N S++ P+ +S +K+H L A + C+L T+ P++DP
Sbjct: 97 CISLNRFCSIVAPVRFNGSSQSAKKTHFEMSFLKQACLQAFVFTCELVTYFLITPRIDPT 156
Query: 268 HEFLRCDFST 239
+++R ST
Sbjct: 157 EKWIRFILST 166
>AL033508-4|CAE45091.1| 430|Caenorhabditis elegans Hypothetical
protein Y106G6G.6 protein.
Length = 430
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 274 DLIEALSVAMFEDHKSLFPQVEGHIVTPEECDEISQKTLKRLKEI 408
D+I LS ++P V H V +CD+ S+ L E+
Sbjct: 96 DIISTLSHRPLVHQMFIYPLVSAHFVKVSQCDQESRIAASALAEV 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,041,322
Number of Sequences: 27780
Number of extensions: 307285
Number of successful extensions: 897
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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