Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30504
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07820.1 68418.m00896 expressed protein                             30   1.2  
At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing ...    29   3.6  
At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ...    29   3.6  
At3g63440.1 68416.m07143 FAD-binding domain-containing protein /...    29   3.6  
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica...    28   4.8  
At4g31810.1 68417.m04521 enoyl-CoA hydratase/isomerase family pr...    28   6.4  
At1g10910.1 68414.m01253 pentatricopeptide (PPR) repeat-containi...    28   6.4  
At1g04890.1 68414.m00486 hypothetical protein contains Pfam prof...    27   8.4  

>At5g07820.1 68418.m00896 expressed protein
          Length = 561

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 316 KSLFPQVEGHIVTPEECDEISQKTLKRLKEIALMRINLQKYNSLIKTSE 462
           K+L  + +G IV P  CD++ +KT   +K+++ +  N       +K  E
Sbjct: 199 KNLKNKEKGKIVEPVRCDDVLEKTDLEVKKVSRISENKSSKEDTLKNKE 247


>At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing
           protein contains Pfam profile PF01465: GRIP domain;
           supporting cDNA gi|20303028|gb|AF499634.1|
          Length = 765

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +2

Query: 62  RAQLEL---LASLEKQVLQNLGASRDSTSVLQQMSTLIKSRKERN 187
           RAQ +L   LASLEK++ +  GA +D++  ++ +   + S   RN
Sbjct: 481 RAQQDLQSALASLEKELEERAGALKDASEQIKSLEVKLDSTVARN 525


>At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing
           protein contains Pfam profile PF01465: GRIP domain;
           supporting cDNA gi|20303028|gb|AF499634.1|
          Length = 788

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +2

Query: 62  RAQLEL---LASLEKQVLQNLGASRDSTSVLQQMSTLIKSRKERN 187
           RAQ +L   LASLEK++ +  GA +D++  ++ +   + S   RN
Sbjct: 481 RAQQDLQSALASLEKELEERAGALKDASEQIKSLEVKLDSTVARN 525


>At3g63440.1 68416.m07143 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase, Zea mays, EMBL:ZMY18377 [gi:3882018]
           [gi:3441978]
          Length = 504

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 448 LTSCISANLSSSMLFPLVASMFFEKSHH 365
           L  C S+++SS    PLV  + FE  HH
Sbjct: 19  LACCFSSSISSLKALPLVGHLEFEHVHH 46


>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to SP|P79051 DNA
           repair protein rhp16 (RAD16 homolog)
           {Schizosaccharomyces pombe}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain, PF00097: Zinc finger,
           C3HC4 type (RING finger)
          Length = 833

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 453 LY*RVVFLQIYPHQCYFL*SLQCFLRNLITFLRCYYMPFN 334
           LY  + FLQI P+  YF     C + + +    C + P N
Sbjct: 399 LYSLIRFLQIRPYSYYFCKDCDCRILDYVAHQSCPHCPHN 438


>At4g31810.1 68417.m04521 enoyl-CoA hydratase/isomerase family
           protein similar to CHY1 [gi:8572760]; contains Pfam
           profile PF00388 enoyl-CoA hydratase/isomerase family
           protein
          Length = 409

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 364 CDEISQKTLKRLKEIA--LMRINLQKY-NSLIKTSETGIGHEYR 486
           C+E  +KTLK++KE +   ++I LQ       +T +  + HEYR
Sbjct: 294 CNEWCKKTLKQIKEASPLSLKITLQSIREGRFQTLDQCLTHEYR 337


>At1g10910.1 68414.m01253 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 652

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +1

Query: 337 EGHIVTPEECDEISQKTLKRLKEIALMRINLQKYNSLIKTSETGIGHEYRGLLLQLVVTS 516
           + +IV  +    ISQ TLK+     ++  N+   N ++K    G GH+   +  ++ ++ 
Sbjct: 523 DAYIVVKDNAKMISQPTLKKFGRAFMISGNINLVNDVLKVLH-GSGHKIDQVQFEIAISR 581

Query: 517 W 519
           +
Sbjct: 582 Y 582


>At1g04890.1 68414.m00486 hypothetical protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 494

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 414 DEDKFAEIQLVNKDKRDRNRARIPRPVTAASRD 512
           D ++F E++LV K+  D + AR+       SRD
Sbjct: 39  DSNRFVELKLVRKNSGDISNARVKDETEDLSRD 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,165,905
Number of Sequences: 28952
Number of extensions: 283745
Number of successful extensions: 820
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)