Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30503
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                120   1e-27
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           91   1e-18
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              89   4e-18
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     39   0.003
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.37 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.37 
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              32   0.49 
SB_42630| Best HMM Match : Ets (HMM E-Value=0)                         31   1.1  
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)                 30   2.0  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.0  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)                      28   6.1  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              28   6.1  
SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)               28   6.1  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  120 bits (289), Expect = 1e-27
 Identities = 55/59 (93%), Positives = 56/59 (94%)
 Frame = +2

Query: 251 G*GSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 427
           G GSFKYAWVLDKLKAERE GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 2   GKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 251
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 43/111 (38%), Positives = 65/111 (58%)
 Frame = +2

Query: 209 QTYHREVREGGPGNG*GSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGH 388
           + Y RE +E        ++  +W LD  + ER+ G T+++    F+T   + T++DAPGH
Sbjct: 177 EKYEREAKEKNRE----TWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGH 232

Query: 389 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREMPCSLSPLGVK 541
           + F+ NMI+G +QAD  VL+++A  GEFE G  + GQTRE        GVK
Sbjct: 233 KSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVK 283



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +3

Query: 189 YKCGGIDKRTIEKFEKEAQEMGKD 260
           Y  G +DKRT+EK+E+EA+E  ++
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRE 189


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 40/73 (54%), Positives = 52/73 (71%)
 Frame = +2

Query: 320 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 499
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 500 TREMPCSLSPLGV 538
           TRE    +  LGV
Sbjct: 61  TREHAILVRSLGV 73


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = +2

Query: 284 DKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 463
           D ++ ER+ GI++  ++  F      + I+D PGH+DF ++     +  D  ++++    
Sbjct: 55  DFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAK 114

Query: 464 G 466
           G
Sbjct: 115 G 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 362 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 466
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 311 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 457
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 200
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 356 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 466
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
 Frame = +2

Query: 284 DKLKAERELGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITGTS 424
           DK    +E GIT+D+    F+ +                +T++D PGH   IK +I G  
Sbjct: 65  DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG-- 122

Query: 425 QADCAVLIVAAGTGEFEAGISKNGQTR-EMPCSLSPLGVKTAHRRSKPNG 571
               A +I   GT   E G  ++G+ +  +P  L P   K     SK  G
Sbjct: 123 ----AQIIGECGT--IEGGFGQSGKVKIRIPGGLLPDTAKQLAGASKKKG 166


>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
          Length = 631

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 554 RSKPNGFH*THHTVSPDF*GEIQEREVIP 640
           R  PNG H   HT+SP+  G ++E  + P
Sbjct: 451 RPVPNGLHPDRHTLSPNSSGSVEENRLSP 479


>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 977

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 554 RSKPNGFH*THHTVSPDF*GEIQEREVIP 640
           R  PNG H   HT+SP+  G ++E  + P
Sbjct: 797 RPVPNGLHPDRHTLSPNSSGSVEENRLSP 825


>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
          Length = 530

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +1

Query: 520 AFTPRCQNSSS*E*TKWVPLNPPYSEPRFLRGN---SRKGGYPSLHPRKDWATNP 675
           A TP+C   +  +   + P  PP+  P  L GN    R GG P L P    +T P
Sbjct: 343 ACTPQCCEGTPAQPMFFAPPPPPFFLPTMLFGNPTEPRHGGSPGLSPLGQQSTCP 397


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 368 IIDAPGHRDFIKNMITGTSQADCAVLIV 451
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 120 THINIVVIGHVDSGKSTTTGHLIY 191
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 129  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 227
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1513

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = +2

Query: 455 AGTGEFEAGISKNGQT----REMPCSLSPLGVKTAHRRSKPNGFH*THHTVSPDF*GEIQ 622
           A T EF+ GIS    T    R  P S S   V     R +   F   H T++P    E++
Sbjct: 479 AETNEFDEGISSKADTDDTPRSAPSSNSEANVDITSDRPQAQEFAPIHLTIAPVQEAEVE 538

Query: 623 EREVI 637
            + V+
Sbjct: 539 AKVVV 543


>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
          Length = 228

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 123 HINIVVIGHVDSGKSTTTGHLIY---KCGGIDKRTIEKFEKEAQEMGKDPSNML 275
           H+   VIGH+    ST  GHLI     C  + + + + F+++   + K  +N+L
Sbjct: 169 HLTSTVIGHLQHLTSTVIGHLIVIDGDCHSLTEISNQGFDRKTNLLCKLGTNIL 222


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 371 IDAPGHRDFIKNMITGTSQADCAVLIVA 454
           +D PGH   +  M+ G +  D A+L++A
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)
          Length = 863

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 315 IPSSRSAFSLSNTQAYLKDPYPFPGPPSRTSRWYVCQYHHIC 190
           + SS S  S S + +      P P P S  + +Y C +H+ C
Sbjct: 160 LSSSSSTISPSQSSSTTAATSPPPPPSSHFNCYYFCYHHYCC 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,906,710
Number of Sequences: 59808
Number of extensions: 467628
Number of successful extensions: 1046
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)