Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30503
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 178 3e-45
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 178 3e-45
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 178 3e-45
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 138 3e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 121 4e-28
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 121 4e-28
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 109 1e-24
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 100 2e-21
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 66 3e-11
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 66 3e-11
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 62 4e-10
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 62 4e-10
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 62 4e-10
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 38 0.007
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 37 0.012
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 36 0.027
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.25
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.25
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 32 0.33
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 31 1.0
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 31 1.0
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 31 1.0
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 1.0
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.8
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical pr... 29 4.1
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 29 4.1
AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical... 29 4.1
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 28 7.1
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 28 7.1
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 28 7.1
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 28 7.1
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 178 bits (433), Expect = 3e-45
Identities = 84/97 (86%), Positives = 87/97 (89%)
Frame = +2
Query: 251 G*GSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 430
G GSFKYAWVLDKLKAERE GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
Query: 431 DCAVLIVAAGTGEFEAGISKNGQTREMPCSLSPLGVK 541
DCAVL+VA GTGEFEAGISKNGQTRE LGVK
Sbjct: 110 DCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVK 146
Score = 109 bits (263), Expect = 1e-24
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = +3
Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 257
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 178 bits (433), Expect = 3e-45
Identities = 84/97 (86%), Positives = 87/97 (89%)
Frame = +2
Query: 251 G*GSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 430
G GSFKYAWVLDKLKAERE GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
Query: 431 DCAVLIVAAGTGEFEAGISKNGQTREMPCSLSPLGVK 541
DCAVL+VA GTGEFEAGISKNGQTRE LGVK
Sbjct: 110 DCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVK 146
Score = 109 bits (263), Expect = 1e-24
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = +3
Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 257
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 540 KQLIVGVNQMGSTEPTIQ*AQIFEGKFKKGRLSLITSKERLGYKPQA 680
KQLIV N+M STEP E +F + + +++GY P+A
Sbjct: 146 KQLIVACNKMDSTEPPFS-----EARFTEITNEVSGFIKKIGYNPKA 187
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 178 bits (433), Expect = 3e-45
Identities = 84/97 (86%), Positives = 87/97 (89%)
Frame = +2
Query: 251 G*GSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 430
G GSFKYAWVLDKLKAERE GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
Query: 431 DCAVLIVAAGTGEFEAGISKNGQTREMPCSLSPLGVK 541
DCAVL+VA GTGEFEAGISKNGQTRE LGVK
Sbjct: 110 DCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVK 146
Score = 109 bits (263), Expect = 1e-24
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = +3
Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 257
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 540 KQLIVGVNQMGSTEPTIQ*AQIFEGKFKKGRLSLITSKERLGYKPQA 680
KQLIV N+M STEP E +F + + +++GY P+A
Sbjct: 146 KQLIVACNKMDSTEPPFS-----EARFTEITNEVSGFIKKIGYNPKA 187
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 138 bits (334), Expect = 3e-33
Identities = 63/68 (92%), Positives = 66/68 (97%)
Frame = +2
Query: 251 G*GSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 430
G GSFKYAWVLDKLKAERE GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
Query: 431 DCAVLIVA 454
DCAVL+VA
Sbjct: 110 DCAVLVVA 117
Score = 109 bits (263), Expect = 1e-24
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = +3
Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 257
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 121 bits (292), Expect = 4e-28
Identities = 57/97 (58%), Positives = 68/97 (70%)
Frame = +2
Query: 248 NG*GSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 427
NG SF YAWVLD+ + ERE G+T+DI FETS + ++DAPGH+DFI NMITGTSQ
Sbjct: 212 NGKASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQ 271
Query: 428 ADCAVLIVAAGTGEFEAGISKNGQTREMPCSLSPLGV 538
AD A+L+V A TGEFE G GQT+E L LGV
Sbjct: 272 ADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGV 308
Score = 58.8 bits (136), Expect = 3e-09
Identities = 25/48 (52%), Positives = 35/48 (72%)
Frame = +3
Query: 114 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 257
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGK 214
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 121 bits (292), Expect = 4e-28
Identities = 57/97 (58%), Positives = 68/97 (70%)
Frame = +2
Query: 248 NG*GSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 427
NG SF YAWVLD+ + ERE G+T+DI FETS + ++DAPGH+DFI NMITGTSQ
Sbjct: 230 NGKASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQ 289
Query: 428 ADCAVLIVAAGTGEFEAGISKNGQTREMPCSLSPLGV 538
AD A+L+V A TGEFE G GQT+E L LGV
Sbjct: 290 ADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGV 326
Score = 58.8 bits (136), Expect = 3e-09
Identities = 25/48 (52%), Positives = 35/48 (72%)
Frame = +3
Query: 114 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 257
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGK 232
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 109 bits (263), Expect = 1e-24
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = +3
Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 257
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2
Query: 251 G*GSFKYAWVLDKLKAER 304
G GSFKYAWVLDKLK +
Sbjct: 50 GKGSFKYAWVLDKLKVTK 67
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 99.5 bits (237), Expect = 2e-21
Identities = 49/111 (44%), Positives = 67/111 (60%)
Frame = +2
Query: 209 QTYHREVREGGPGNG*GSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGH 388
+ Y RE +E G S+ +W +D ERE G T+++ FET K + TI+DAPGH
Sbjct: 142 EKYEREAKEKGRE----SWYLSWCMDTNDEEREKGKTVEVGRAYFETEKRHFTILDAPGH 197
Query: 389 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREMPCSLSPLGVK 541
+ F+ NMI G +QAD AVL+++A GEFE G + GQTRE + GVK
Sbjct: 198 KSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVK 248
Score = 68.5 bits (160), Expect = 4e-12
Identities = 28/51 (54%), Positives = 40/51 (78%)
Frame = +3
Query: 108 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKD 260
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G++
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRE 154
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 65.7 bits (153), Expect = 3e-11
Identities = 33/65 (50%), Positives = 43/65 (66%)
Frame = +2
Query: 281 LDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 460
+DK K E++ GITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAAT 142
Query: 461 TGEFE 475
G E
Sbjct: 143 DGVME 147
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 117 KTHINIVVIGHVDSGKSTTT 176
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 65.7 bits (153), Expect = 3e-11
Identities = 33/65 (50%), Positives = 43/65 (66%)
Frame = +2
Query: 281 LDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 460
+DK K E++ GITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAAT 142
Query: 461 TGEFE 475
G E
Sbjct: 143 DGVME 147
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 117 KTHINIVVIGHVDSGKSTTT 176
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/62 (46%), Positives = 41/62 (66%)
Frame = +2
Query: 281 LDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 460
+D E+ GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 87 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 146
Query: 461 TG 466
G
Sbjct: 147 DG 148
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 111 KEKTHINIVVIGHVDSGKSTTT 176
++K H+N+ IGHVD GK+T T
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLT 66
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/62 (46%), Positives = 41/62 (66%)
Frame = +2
Query: 281 LDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 460
+D E+ GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 147
Query: 461 TG 466
G
Sbjct: 148 DG 149
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 111 KEKTHINIVVIGHVDSGKSTTT 176
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/62 (46%), Positives = 41/62 (66%)
Frame = +2
Query: 281 LDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 460
+D E+ GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 147
Query: 461 TG 466
G
Sbjct: 148 DG 149
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 111 KEKTHINIVVIGHVDSGKSTTT 176
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/63 (38%), Positives = 33/63 (52%)
Frame = +2
Query: 278 VLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 457
+LDKL+ ERE GIT+ Y + +ID PGH DF + + D +L+VAA
Sbjct: 76 MLDKLQVERERGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAA 135
Query: 458 GTG 466
G
Sbjct: 136 NQG 138
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 129 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 245
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 311 GITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 466
GIT I + E +K VT +D PGH F G AD VL+VAA G
Sbjct: 188 GITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDG 240
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +2
Query: 278 VLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 457
V D L ERE GIT+ A + + + +ID PGH DF + D V+++
Sbjct: 64 VTDFLDIERERGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDG 123
Query: 458 GTG 466
G
Sbjct: 124 SAG 126
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 129 NIVVIGHVDSGKSTTTGHLIYKCGGI 206
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 35.9 bits (79), Expect = 0.027
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +2
Query: 281 LDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 460
+D + ER+ GITI A + + IID PGH DF + D AVL++ G
Sbjct: 87 MDFMDLERQRGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CG 145
Query: 461 TG 466
G
Sbjct: 146 VG 147
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 129 NIVVIGHVDSGKSTTTGHLIYKCGGID 209
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 200
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +2
Query: 281 LDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 460
L+ +K E + T+++ K + + + + +ID+PGH DF + D A+++V
Sbjct: 86 LEFVKGENQFE-TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCV 144
Query: 461 TG 466
+G
Sbjct: 145 SG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 200
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +2
Query: 281 LDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 460
L+ +K E + T+++ K + + + + +ID+PGH DF + D A+++V
Sbjct: 86 LEFVKGENQFE-TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCV 144
Query: 461 TG 466
+G
Sbjct: 145 SG 146
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 32.3 bits (70), Expect = 0.33
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 129 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKDPSNMLGYWTN 290
+I+ GH+D S GH +K GI E FE E ++ + P+ GY T+
Sbjct: 1633 SIIPSGHIDQPISLPRGHTGFKPAGIVNED-ELFETERKQREESPTRESGYATS 1685
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +2
Query: 281 LDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 451
+D + E+ GIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +2
Query: 281 LDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 451
+D + E+ GIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 320 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 466
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 189 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 320 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 466
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 64 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 359 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 454
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 368 IIDAPGHRDFIKNMITGTSQADCAVLIV 451
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 126 INIVVIGHVDSGKSTTT 176
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 362 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 466
+ +ID PGH I+ ++ ++ D A++I+ G
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG 108
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 126 INIVVIGHVDSGKSTTT 176
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 99 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGKD 260
PK +EK I + +V+ G TTG +CGG ++ R + + AQE KD
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWKD 1354
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 99 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGKD 260
PK +EK I + +V+ G TTG +CGG ++ R + + AQE KD
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWKD 1354
>Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical
protein D2005.5 protein.
Length = 1119
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 549 IVGVNQMGSTEPTIQ*AQIFEGKFKKGRLSLITS 650
++G N+ G+ + T Q Q+ KF GRL +I +
Sbjct: 800 VLGTNKQGAVQQTSQEQQLTLDKFNNGRLKVIVA 833
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 99 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGKD 260
PK +EK I + +V+ G TTG +CGG ++ R + + AQE KD
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWKD 1354
>AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical
protein Y110A7A.8 protein.
Length = 504
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 165 STTTGHLIYKCGGIDKRTIEKFEKEAQEMGKDPSNMLGYWT 287
STTT HL+ + GG+ Q +GK N++G+ T
Sbjct: 234 STTTAHLVSQAGGLSPLATMP-SCNVQVLGKTKKNLIGFST 273
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 275 WVLDKLKAERELGITIDIALWKFETSKYYVTII 373
W+++KL R L +T W ++ YVT I
Sbjct: 1443 WLIEKLVTRRNLTVTSPRQPWYYQQGSQYVTTI 1475
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 362 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 457
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 275 WVLDKLKAERELGITIDIALWKFETSKYYVTII 373
W+++KL R L +T W ++ YVT I
Sbjct: 1443 WLIEKLVTRRNLTVTSPRQPWYYQQGSQYVTTI 1475
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 99 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 191
P K+ + V+G+VD+GKST G L +
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 275 WVLDKLKAERELGITIDIALWKFETSKYYVTII 373
W+++KL R L +T W ++ YVT I
Sbjct: 1443 WLIEKLVTRRNLTVTSPRQPWYYQQGSQYVTTI 1475
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 99 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 191
P K+ + V+G+VD+GKST G L +
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,285,054
Number of Sequences: 27780
Number of extensions: 345395
Number of successful extensions: 1057
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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